Wall clock time and date at job start Sat Apr 11 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99837 * 2 1 4 4 C 1.50691 * 109.47440 * 270.00278 * 3 2 1 5 5 H 1.08005 * 120.00063 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00322 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00129 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99786 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.46937 * 89.99999 * 8 6 4 10 10 H 1.48500 * 109.46933 * 210.00151 * 8 6 4 11 11 H 1.48503 * 109.47057 * 329.99926 * 8 6 4 12 12 C 1.39670 * 119.99570 * 180.02562 * 2 1 3 13 13 C 1.38912 * 120.07871 * 359.97438 * 12 2 1 14 14 C 1.38106 * 119.92517 * 179.97438 * 13 12 2 15 15 C 1.38289 * 120.07417 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.92406 * 180.02562 * 15 14 13 17 17 N 1.46897 * 109.47253 * 89.99986 * 16 15 14 18 18 C 1.47965 * 111.00070 * 190.00020 * 17 16 15 19 19 C 1.53939 * 86.17880 * 137.58385 * 18 17 16 20 20 S 1.81400 * 113.73249 * 221.81483 * 19 18 17 21 21 C 1.81399 * 101.92286 * 178.10102 * 20 19 18 22 22 O 1.42103 * 108.58073 * 292.58708 * 20 19 18 23 23 O 1.42099 * 108.57797 * 63.61252 * 20 19 18 24 24 C 1.47960 * 111.00044 * 289.36010 * 17 16 15 25 25 C 1.38283 * 120.15043 * 0.27405 * 15 14 13 26 26 C 1.38109 * 120.07448 * 359.45346 * 25 15 14 27 27 H 1.09002 * 109.46772 * 270.00028 * 1 2 3 28 28 H 1.09001 * 109.47190 * 29.99415 * 1 2 3 29 29 H 1.08999 * 109.47221 * 149.99651 * 1 2 3 30 30 H 1.09000 * 109.47261 * 30.00919 * 3 2 1 31 31 H 1.09003 * 109.46535 * 150.00488 * 3 2 1 32 32 H 0.96997 * 119.99788 * 179.97438 * 7 6 4 33 33 H 1.07993 * 120.03687 * 359.95941 * 13 12 2 34 34 H 1.08000 * 119.96083 * 180.02562 * 14 13 12 35 35 H 1.09008 * 109.46805 * 330.00126 * 16 15 14 36 36 H 1.08992 * 109.47033 * 210.00528 * 16 15 14 37 37 H 1.08999 * 113.75581 * 23.26965 * 18 17 16 38 38 H 1.08999 * 113.75871 * 251.90170 * 18 17 16 39 39 H 1.09002 * 113.73278 * 90.63886 * 19 18 17 40 40 H 1.09001 * 109.46938 * 60.00064 * 21 20 19 41 41 H 1.09001 * 109.47490 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.47005 * 300.00366 * 21 20 19 43 43 H 1.09001 * 113.75748 * 108.09640 * 24 17 16 44 44 H 1.09002 * 113.76361 * 336.73597 * 24 17 16 45 45 H 1.07995 * 119.95975 * 179.69929 * 25 15 14 46 46 H 1.08000 * 120.03858 * 180.26803 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0973 1.0963 -2.2417 6 6 3.1268 2.8776 -1.6726 7 7 3.3455 3.2575 -2.9126 8 14 3.7350 3.9281 -0.2527 9 1 5.1083 3.5058 0.1226 10 1 3.7508 5.3549 -0.6639 11 1 2.8293 3.7585 0.9119 12 6 2.1633 -1.2096 -0.0005 13 6 1.4703 -2.4135 -0.0005 14 6 2.1639 -3.6078 -0.0016 15 6 3.5468 -3.6060 -0.0032 16 6 4.3003 -4.9110 -0.0050 17 7 4.5435 -5.3342 -1.3905 18 6 5.0654 -6.7179 -1.4385 19 6 4.1083 -6.9280 -2.6257 20 16 3.2451 -8.5231 -2.5942 21 6 2.1894 -8.4070 -4.0648 22 8 4.1973 -9.5575 -2.8010 23 8 2.4139 -8.5654 -1.4424 24 6 3.2867 -5.7646 -2.0419 25 6 4.2398 -2.4093 0.0020 26 6 3.5525 -1.2115 -0.0026 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0284 0.5140 31 1 3.1500 1.1383 0.5138 32 1 3.8223 4.0834 -3.0898 33 1 0.3904 -2.4156 0.0005 34 1 1.6257 -4.5441 -0.0020 35 1 3.7117 -5.6711 0.5091 36 1 5.2532 -4.7811 0.5079 37 1 4.8133 -7.3130 -0.5607 38 1 6.1197 -6.7806 -1.7079 39 1 4.5559 -6.7062 -3.5946 40 1 2.8122 -8.2752 -4.9496 41 1 1.6047 -9.3214 -4.1655 42 1 1.5174 -7.5549 -3.9633 43 1 2.9198 -5.0654 -2.7934 44 1 2.5144 -6.0808 -1.3406 45 1 5.3198 -2.4115 0.0056 46 1 4.0943 -0.2772 -0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841887420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:46 Heat of formation + Delta-G solvation = 15.732804 kcal Electronic energy + Delta-G solvation = -26855.425660 eV Core-core repulsion = 23067.376882 eV Total energy + Delta-G solvation = -3788.048778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.33815 -38.86015 -37.32798 -36.38520 -35.90770 -32.77304 -31.81224 -30.61041 -30.03521 -28.74061 -28.20768 -26.53826 -25.61175 -23.97904 -22.17710 -21.59319 -20.57015 -19.70534 -19.10337 -17.62618 -16.97232 -16.77240 -16.59723 -16.43031 -15.89539 -15.35548 -15.10363 -14.59615 -14.35875 -14.10151 -13.80360 -13.63626 -13.60739 -13.47363 -13.24429 -13.08288 -12.92086 -12.54312 -12.47050 -12.38249 -12.34003 -11.99522 -11.71980 -11.66622 -11.48856 -11.41661 -11.30396 -11.01931 -10.82103 -10.67827 -10.63446 -10.26819 -10.10682 -9.62042 -9.10018 -8.86817 -8.68692 -8.37145 -6.47117 -6.17585 -4.17754 -0.40304 2.00700 2.09050 2.29575 3.10176 3.19418 3.27182 3.28027 3.38955 3.59868 3.88461 3.99939 4.25351 4.29543 4.40925 4.47791 4.59852 4.79556 4.84579 5.01619 5.11457 5.13311 5.22755 5.26257 5.33784 5.43246 5.48024 5.55494 5.67149 5.71646 5.90910 5.96503 6.05801 6.17945 6.27026 6.32474 6.48585 6.69540 6.70390 6.75757 6.94824 7.01177 7.20449 7.46148 7.50332 7.99613 8.28820 8.47585 8.89663 9.42239 10.95467 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.002337 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.327867 B =11979.658625 C =12159.411605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.611 5.611 3 C 0.220 3.780 4 C -0.535 4.535 5 H 0.076 0.924 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.242 3.758 13 C -0.217 4.217 14 C -0.068 4.068 15 C -0.169 4.169 16 C 0.068 3.932 17 N -0.454 5.454 18 C 0.034 3.966 19 C -0.612 4.612 20 S 2.417 3.583 21 C -0.653 4.653 22 O -0.941 6.941 23 O -0.937 6.937 24 C 0.035 3.965 25 C -0.050 4.050 26 C -0.188 4.188 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.161 0.839 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.113 0.887 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 -21.323 1.844 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.316 5.316 3 C 0.099 3.901 4 C -0.573 4.573 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.136 3.864 13 C -0.240 4.240 14 C -0.087 4.087 15 C -0.172 4.172 16 C -0.059 4.059 17 N -0.177 5.177 18 C -0.096 4.096 19 C -0.722 4.722 20 S 2.599 3.401 21 C -0.802 4.802 22 O -0.938 6.938 23 O -0.934 6.934 24 C -0.095 4.095 25 C -0.070 4.070 26 C -0.210 4.210 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.179 0.821 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.125 0.875 44 H 0.110 0.890 45 H 0.131 0.869 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.925 -21.103 2.079 21.226 hybrid contribution -0.213 0.827 0.164 0.870 sum -1.138 -20.276 2.243 20.432 Atomic orbital electron populations 1.21501 0.80982 1.02344 0.99741 1.46733 1.04443 1.03957 1.76485 1.19664 0.91921 0.80670 0.97836 1.21461 1.37005 1.07301 0.91580 0.90582 1.24900 0.95391 0.97244 0.95479 1.69899 1.41184 1.23490 1.18667 0.86912 0.79955 0.80201 0.83034 1.19867 1.20940 1.19029 1.17930 0.91469 0.85875 0.91146 1.20522 0.99077 0.91227 1.13220 1.20562 0.93237 0.96667 0.98262 1.19060 0.93135 0.93491 1.11487 1.21496 0.99965 0.94951 0.89509 1.68867 1.14979 1.17934 1.15939 1.23634 1.00332 0.92046 0.93571 1.32230 1.11635 1.19276 1.09025 1.07990 0.77052 0.77487 0.77577 1.30208 1.16678 1.11953 1.21408 1.93595 1.61107 1.52708 1.86355 1.93608 1.67653 1.86152 1.45954 1.23735 0.93387 0.93238 0.99132 1.20638 0.98815 0.91273 0.96256 1.20839 0.92607 0.98717 1.08848 0.94493 0.91241 0.92385 0.95424 0.95480 0.92480 0.86705 0.87416 0.93402 0.89904 0.90239 0.87357 0.82088 0.85217 0.85349 0.85001 0.87457 0.88989 0.86894 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.63 10.19 59.85 0.61 2.24 16 2 N -0.61 -12.44 2.99 -181.00 -0.54 -12.98 16 3 C 0.22 5.09 3.98 -5.20 -0.02 5.07 16 4 C -0.53 -14.64 9.94 -34.45 -0.34 -14.98 16 5 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 6 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 7 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 8 Si 0.87 20.47 27.47 -169.99 -4.67 15.81 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 12 C 0.24 4.68 6.55 -83.79 -0.55 4.13 16 13 C -0.22 -3.57 9.21 -39.38 -0.36 -3.93 16 14 C -0.07 -0.99 8.96 -39.61 -0.35 -1.34 16 15 C -0.17 -2.47 5.13 -104.59 -0.54 -3.01 16 16 C 0.07 0.81 4.97 -4.98 -0.02 0.78 16 17 N -0.45 -5.07 6.25 -239.91 -1.50 -6.57 16 18 C 0.03 0.29 7.57 -2.76 -0.02 0.27 16 19 C -0.61 -4.32 4.35 -25.80 -0.11 -4.43 16 20 S 2.42 17.56 5.34 -107.50 -0.57 16.99 16 21 C -0.65 -2.69 10.62 101.05 1.07 -1.62 16 22 O -0.94 -10.08 18.10 -57.83 -1.05 -11.13 16 23 O -0.94 -9.99 17.24 -57.83 -1.00 -10.99 16 24 C 0.03 0.32 6.49 -2.77 -0.02 0.31 16 25 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 26 C -0.19 -3.63 9.21 -39.38 -0.36 -3.99 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 29 H 0.06 0.86 6.20 -51.93 -0.32 0.53 16 30 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 31 H 0.03 0.63 5.63 -51.93 -0.29 0.33 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.12 1.68 6.14 -52.49 -0.32 1.36 16 34 H 0.11 1.30 7.43 -52.49 -0.39 0.91 16 35 H 0.05 0.51 7.63 -51.92 -0.40 0.12 16 36 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.08 0.63 7.75 -51.93 -0.40 0.23 16 38 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.16 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.13 0.32 8.14 -51.92 -0.42 -0.11 16 41 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 42 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 43 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.09 0.83 6.35 -51.93 -0.33 0.50 16 45 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 46 H 0.13 2.69 6.14 -52.49 -0.32 2.36 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -35.85 382.40 -11.25 -47.10 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.96 Total: 1.71 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -1.50 Total: -19.78 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -1.27 Total: -45.47 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -2.04 Total: -22.12 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.81 kcal Atomic # 16 Polarization: 17.56 SS G_CDS: -0.57 Total: 16.99 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.85 -11.25 -47.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841887420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.833 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds