Wall clock time and date at job start Sat Apr 11 2020 05:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99837 * 2 1 4 4 C 1.50691 * 109.47440 * 270.00278 * 3 2 1 5 5 H 1.08005 * 120.00063 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00322 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00129 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99786 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.46937 * 89.99999 * 8 6 4 10 10 H 1.48500 * 109.46933 * 210.00151 * 8 6 4 11 11 H 1.48503 * 109.47057 * 329.99926 * 8 6 4 12 12 C 1.39670 * 119.99570 * 180.02562 * 2 1 3 13 13 C 1.38912 * 120.07871 * 359.97438 * 12 2 1 14 14 C 1.38106 * 119.92517 * 179.97438 * 13 12 2 15 15 C 1.38289 * 120.07417 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.92406 * 180.02562 * 15 14 13 17 17 N 1.46897 * 109.47253 * 89.99986 * 16 15 14 18 18 C 1.47965 * 111.00070 * 190.00020 * 17 16 15 19 19 C 1.53939 * 86.17880 * 137.58385 * 18 17 16 20 20 S 1.81400 * 113.73249 * 221.81483 * 19 18 17 21 21 C 1.81399 * 101.92286 * 178.10102 * 20 19 18 22 22 O 1.42103 * 108.58073 * 292.58708 * 20 19 18 23 23 O 1.42099 * 108.57797 * 63.61252 * 20 19 18 24 24 C 1.47960 * 111.00044 * 289.36010 * 17 16 15 25 25 C 1.38283 * 120.15043 * 0.27405 * 15 14 13 26 26 C 1.38109 * 120.07448 * 359.45346 * 25 15 14 27 27 H 1.09002 * 109.46772 * 270.00028 * 1 2 3 28 28 H 1.09001 * 109.47190 * 29.99415 * 1 2 3 29 29 H 1.08999 * 109.47221 * 149.99651 * 1 2 3 30 30 H 1.09000 * 109.47261 * 30.00919 * 3 2 1 31 31 H 1.09003 * 109.46535 * 150.00488 * 3 2 1 32 32 H 0.96997 * 119.99788 * 179.97438 * 7 6 4 33 33 H 1.07993 * 120.03687 * 359.95941 * 13 12 2 34 34 H 1.08000 * 119.96083 * 180.02562 * 14 13 12 35 35 H 1.09008 * 109.46805 * 330.00126 * 16 15 14 36 36 H 1.08992 * 109.47033 * 210.00528 * 16 15 14 37 37 H 1.08999 * 113.75581 * 23.26965 * 18 17 16 38 38 H 1.08999 * 113.75871 * 251.90170 * 18 17 16 39 39 H 1.09002 * 113.73278 * 90.63886 * 19 18 17 40 40 H 1.09001 * 109.46938 * 60.00064 * 21 20 19 41 41 H 1.09001 * 109.47490 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.47005 * 300.00366 * 21 20 19 43 43 H 1.09001 * 113.75748 * 108.09640 * 24 17 16 44 44 H 1.09002 * 113.76361 * 336.73597 * 24 17 16 45 45 H 1.07995 * 119.95975 * 179.69929 * 25 15 14 46 46 H 1.08000 * 120.03858 * 180.26803 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0973 1.0963 -2.2417 6 6 3.1268 2.8776 -1.6726 7 7 3.3455 3.2575 -2.9126 8 14 3.7350 3.9281 -0.2527 9 1 5.1083 3.5058 0.1226 10 1 3.7508 5.3549 -0.6639 11 1 2.8293 3.7585 0.9119 12 6 2.1633 -1.2096 -0.0005 13 6 1.4703 -2.4135 -0.0005 14 6 2.1639 -3.6078 -0.0016 15 6 3.5468 -3.6060 -0.0032 16 6 4.3003 -4.9110 -0.0050 17 7 4.5435 -5.3342 -1.3905 18 6 5.0654 -6.7179 -1.4385 19 6 4.1083 -6.9280 -2.6257 20 16 3.2451 -8.5231 -2.5942 21 6 2.1894 -8.4070 -4.0648 22 8 4.1973 -9.5575 -2.8010 23 8 2.4139 -8.5654 -1.4424 24 6 3.2867 -5.7646 -2.0419 25 6 4.2398 -2.4093 0.0020 26 6 3.5525 -1.2115 -0.0026 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0284 0.5140 31 1 3.1500 1.1383 0.5138 32 1 3.8223 4.0834 -3.0898 33 1 0.3904 -2.4156 0.0005 34 1 1.6257 -4.5441 -0.0020 35 1 3.7117 -5.6711 0.5091 36 1 5.2532 -4.7811 0.5079 37 1 4.8133 -7.3130 -0.5607 38 1 6.1197 -6.7806 -1.7079 39 1 4.5559 -6.7062 -3.5946 40 1 2.8122 -8.2752 -4.9496 41 1 1.6047 -9.3214 -4.1655 42 1 1.5174 -7.5549 -3.9633 43 1 2.9198 -5.0654 -2.7934 44 1 2.5144 -6.0808 -1.3406 45 1 5.3198 -2.4115 0.0056 46 1 4.0943 -0.2772 -0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841887420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:45 Heat of formation + Delta-G solvation = -11.851806 kcal Electronic energy + Delta-G solvation = -26856.621818 eV Core-core repulsion = 23067.376882 eV Total energy + Delta-G solvation = -3789.244937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18460 -40.11143 -38.01402 -37.33346 -37.06301 -34.77038 -32.95537 -31.99445 -30.52576 -30.22360 -29.42149 -27.26591 -26.86400 -25.35250 -23.58960 -22.97924 -21.38173 -21.01906 -19.72075 -19.08340 -18.38913 -18.02100 -17.27587 -17.10544 -16.91623 -16.47255 -16.32390 -16.02850 -15.48123 -15.21504 -15.11717 -14.83874 -14.57321 -14.37419 -14.17674 -14.00729 -13.90897 -13.73839 -13.49188 -13.34038 -13.21993 -13.17219 -13.10917 -13.04294 -12.67265 -12.43017 -12.41413 -12.10174 -12.04887 -11.98553 -11.79518 -11.73899 -11.44062 -11.40041 -10.82672 -10.40988 -9.78407 -9.68162 -8.33894 -7.92230 -6.38969 -0.94671 0.68684 0.80143 1.34182 1.34535 1.45113 1.78296 2.29968 2.51484 2.53545 2.75071 2.90999 3.00193 3.15121 3.35570 3.75524 3.90359 4.00778 4.13111 4.14080 4.19388 4.27495 4.28996 4.38869 4.40824 4.55583 4.61429 4.64912 4.69794 4.75699 4.76785 4.80918 4.87592 4.91277 5.00735 5.03211 5.06562 5.25281 5.31054 5.45345 5.58490 5.65958 5.85787 6.01082 6.08518 6.20760 6.59256 6.69360 6.86413 7.26504 8.83504 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.002337 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.327867 B =11979.658625 C =12159.411605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.628 5.628 3 C 0.231 3.769 4 C -0.535 4.535 5 H 0.025 0.975 6 C 0.012 3.988 7 N -0.946 5.946 8 Si 0.945 3.055 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.243 1.243 12 C 0.213 3.787 13 C -0.213 4.213 14 C -0.063 4.063 15 C -0.156 4.156 16 C 0.069 3.931 17 N -0.478 5.478 18 C 0.025 3.975 19 C -0.596 4.596 20 S 2.426 3.574 21 C -0.638 4.638 22 O -0.980 6.980 23 O -0.975 6.975 24 C 0.026 3.974 25 C -0.057 4.057 26 C -0.217 4.217 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.028 0.972 32 H 0.268 0.732 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.184 0.816 40 H 0.153 0.847 41 H 0.139 0.861 42 H 0.149 0.851 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.122 0.878 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 -23.083 2.594 23.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.336 5.336 3 C 0.109 3.891 4 C -0.574 4.574 5 H 0.044 0.956 6 C -0.186 4.186 7 N -0.586 5.586 8 Si 0.768 3.232 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.167 1.167 12 C 0.108 3.892 13 C -0.236 4.236 14 C -0.082 4.082 15 C -0.159 4.159 16 C -0.059 4.059 17 N -0.200 5.200 18 C -0.104 4.104 19 C -0.705 4.705 20 S 2.612 3.388 21 C -0.791 4.791 22 O -0.977 6.977 23 O -0.972 6.972 24 C -0.104 4.104 25 C -0.076 4.076 26 C -0.239 4.239 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.202 0.798 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.168 0.832 43 H 0.126 0.874 44 H 0.114 0.886 45 H 0.140 0.860 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.524 -22.917 2.873 23.147 hybrid contribution -0.038 1.201 -0.208 1.219 sum -1.562 -21.716 2.665 21.935 Atomic orbital electron populations 1.21644 0.79080 1.02573 1.01327 1.46702 1.05660 1.03282 1.77968 1.19334 0.92572 0.82461 0.94773 1.21651 1.36386 1.06670 0.92643 0.95615 1.25854 0.95524 0.98783 0.98408 1.70062 1.42743 1.24420 1.21350 0.85755 0.79842 0.77853 0.79793 1.19117 1.20561 1.16678 1.18207 0.91608 0.86517 0.92835 1.20788 1.00143 0.90618 1.12060 1.20934 0.93323 0.97321 0.96597 1.19399 0.93581 0.94060 1.08849 1.21507 1.00134 0.93640 0.90589 1.68833 1.16233 1.19705 1.15272 1.23778 1.01338 0.90702 0.94630 1.32142 1.10618 1.18149 1.09596 1.07466 0.76573 0.76691 0.78021 1.30077 1.16327 1.13417 1.19289 1.93547 1.62758 1.54295 1.87127 1.93554 1.68222 1.86587 1.48857 1.23833 0.93171 0.94052 0.99351 1.20801 0.99455 0.91185 0.96202 1.20806 0.93167 0.98673 1.11289 0.92047 0.92584 0.90634 0.94670 0.95391 0.92323 0.84760 0.84172 0.91982 0.89344 0.89708 0.86429 0.79830 0.82898 0.84267 0.83239 0.87434 0.88564 0.85955 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.13 10.19 127.77 1.30 4.44 16 2 N -0.63 -25.82 2.99 -726.56 -2.17 -27.99 16 3 C 0.23 10.86 3.98 85.63 0.34 11.20 16 4 C -0.53 -30.51 9.94 25.60 0.25 -30.26 16 5 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 6 C 0.01 0.71 5.47 84.65 0.46 1.17 16 7 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16 8 Si 0.94 42.75 27.47 68.60 1.88 44.64 16 9 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 12 C 0.21 8.24 6.55 38.22 0.25 8.49 16 13 C -0.21 -6.64 9.21 22.40 0.21 -6.44 16 14 C -0.06 -1.67 8.96 22.25 0.20 -1.47 16 15 C -0.16 -4.31 5.13 -19.84 -0.10 -4.41 16 16 C 0.07 1.48 4.97 85.56 0.43 1.91 16 17 N -0.48 -9.67 6.25 -912.94 -5.71 -15.38 16 18 C 0.02 0.38 7.57 86.41 0.65 1.04 16 19 C -0.60 -6.94 4.35 31.24 0.14 -6.80 16 20 S 2.43 30.48 5.34 -56.49 -0.30 30.18 16 21 C -0.64 -2.99 10.62 113.37 1.20 -1.79 16 22 O -0.98 -19.84 18.10 -127.37 -2.31 -22.15 16 23 O -0.97 -19.38 17.24 -127.37 -2.20 -21.57 16 24 C 0.03 0.41 6.49 86.41 0.56 0.97 16 25 C -0.06 -1.88 9.69 22.25 0.22 -1.67 16 26 C -0.22 -8.63 9.21 22.40 0.21 -8.42 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 1.93 8.07 -2.39 -0.02 1.91 16 29 H 0.08 2.13 6.20 -2.39 -0.01 2.11 16 30 H 0.04 1.59 7.13 -2.39 -0.02 1.58 16 31 H 0.03 1.31 5.63 -2.39 -0.01 1.30 16 32 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.13 3.58 6.14 -2.91 -0.02 3.56 16 34 H 0.14 2.83 7.43 -2.91 -0.02 2.81 16 35 H 0.06 1.16 7.63 -2.38 -0.02 1.14 16 36 H 0.09 1.78 8.08 -2.39 -0.02 1.76 16 37 H 0.08 1.20 7.75 -2.39 -0.02 1.18 16 38 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.18 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.15 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.15 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.10 1.46 6.35 -2.39 -0.02 1.44 16 45 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 46 H 0.10 4.44 6.14 -2.91 -0.02 4.43 16 Total: -1.00 -81.38 382.40 -3.27 -84.65 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.92 Total: 17.98 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 6.32 Total: -32.03 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -7.58 Total: -101.69 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -4.50 Total: -43.72 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.64 kcal Atomic # 16 Polarization: 30.48 SS G_CDS: -0.30 Total: 30.18 kcal Total: -81.38 -3.27 -84.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841887420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.793 kcal (2) G-P(sol) polarization free energy of solvation -81.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds