Wall clock time and date at job start Sat Apr 11 2020 05:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.48046 * 110.99886 * 2 1 4 4 C 1.51179 * 105.67332 * 91.76089 * 3 2 1 5 5 C 1.38181 * 131.77662 * 197.48106 * 4 3 2 6 6 C 1.38225 * 120.03137 * 180.02562 * 5 4 3 7 7 C 1.38254 * 119.99972 * 359.97438 * 6 5 4 8 8 C 1.38219 * 120.00350 * 0.04189 * 7 6 5 9 9 C 1.38183 * 120.03307 * 359.95773 * 8 7 6 10 10 C 1.48049 * 110.99779 * 115.00749 * 2 1 3 11 11 H 1.09002 * 110.27507 * 149.15422 * 10 2 1 12 12 C 1.52997 * 110.21169 * 27.29172 * 10 2 1 13 13 N 1.46506 * 109.47289 * 57.29666 * 12 10 2 14 14 S 1.65593 * 120.00245 * 165.00019 * 13 12 10 15 15 O 1.42096 * 104.27800 * 181.07039 * 14 13 12 16 16 O 1.42107 * 104.27962 * 308.92957 * 14 13 12 17 17 C 1.81398 * 104.45010 * 65.00091 * 14 13 12 18 18 C 1.52998 * 109.47400 * 179.97438 * 17 14 13 19 19 C 1.52998 * 109.47287 * 179.97438 * 18 17 14 20 20 C 1.50700 * 109.47144 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00180 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00076 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99934 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99869 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47349 * 89.99781 * 24 22 20 26 26 H 1.48500 * 109.46857 * 210.00173 * 24 22 20 27 27 H 1.48503 * 109.46993 * 329.99673 * 24 22 20 28 28 H 1.09002 * 109.46797 * 304.99233 * 1 2 3 29 29 H 1.08995 * 109.47166 * 64.99075 * 1 2 3 30 30 H 1.08998 * 109.47357 * 184.99572 * 1 2 3 31 31 H 1.08998 * 110.21050 * 332.70695 * 3 2 1 32 32 H 1.09004 * 110.27357 * 210.84329 * 3 2 1 33 33 H 1.08001 * 119.98276 * 0.02562 * 5 4 3 34 34 H 1.08002 * 119.99930 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.00212 * 180.02562 * 7 6 5 36 36 H 1.08003 * 119.98525 * 179.97438 * 8 7 6 37 37 H 1.09001 * 109.47289 * 297.29538 * 12 10 2 38 38 H 1.09004 * 109.47261 * 177.29794 * 12 10 2 39 39 H 0.97000 * 119.99344 * 345.00347 * 13 12 10 40 40 H 1.09001 * 109.47170 * 299.99914 * 17 14 13 41 41 H 1.09000 * 109.46973 * 59.99957 * 17 14 13 42 42 H 1.09000 * 109.47470 * 300.00341 * 18 17 14 43 43 H 1.09000 * 109.46999 * 60.00087 * 18 17 14 44 44 H 1.09001 * 109.47507 * 300.00165 * 19 18 17 45 45 H 1.09006 * 109.47174 * 60.00356 * 19 18 17 46 46 H 0.97008 * 119.99604 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9996 1.3821 0.0000 4 6 2.1877 1.7474 1.4549 5 6 2.3449 2.9671 2.0850 6 6 2.5022 3.0217 3.4571 7 6 2.5018 1.8557 4.1999 8 6 2.3449 0.6352 3.5704 9 6 2.1876 0.5798 2.1987 10 6 1.9996 -0.5843 1.2526 11 1 2.9545 -1.0755 1.0655 12 6 0.9978 -1.5828 1.8359 13 7 0.7107 -2.6223 0.8443 14 16 -0.0372 -4.0251 1.3080 15 8 -0.1251 -4.7873 0.1120 16 8 0.7297 -4.4823 2.4135 17 6 -1.6866 -3.5005 1.8510 18 6 -2.4854 -4.7224 2.3090 19 6 -3.8763 -4.2799 2.7675 20 6 -4.6629 -5.4833 3.2192 21 1 -4.2154 -6.4656 3.1832 22 6 -5.9540 -5.3305 3.6784 23 7 -6.6402 -6.3807 4.0730 24 14 -6.7284 -3.6316 3.7400 25 1 -7.4173 -3.3547 2.4541 26 1 -7.7124 -3.5762 4.8508 27 1 -5.6709 -2.6134 3.9644 28 1 -0.3633 0.5894 0.8419 29 1 -0.3633 0.4344 -0.9313 30 1 -0.3634 -1.0237 0.0895 31 1 1.2859 2.0594 -0.4690 32 1 2.9546 1.4202 -0.5242 33 1 2.3449 3.8782 1.5050 34 1 2.6255 3.9753 3.9490 35 1 2.6242 1.8984 5.2721 36 1 2.3450 -0.2755 4.1509 37 1 0.0754 -1.0629 2.0947 38 1 1.4201 -2.0407 2.7304 39 1 0.9588 -2.4889 -0.0839 40 1 -1.5902 -2.7979 2.6788 41 1 -2.2052 -3.0174 1.0229 42 1 -2.5818 -5.4247 1.4810 43 1 -1.9670 -5.2059 3.1370 44 1 -3.7796 -3.5778 3.5957 45 1 -4.3950 -3.7961 1.9398 46 1 -7.5487 -6.2731 4.3958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867794079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:59 Heat of formation + Delta-G solvation = -57.206787 kcal Electronic energy + Delta-G solvation = -27160.590020 eV Core-core repulsion = 23369.378344 eV Total energy + Delta-G solvation = -3791.211676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.82943 -38.45858 -38.16583 -37.05983 -36.50819 -35.83788 -34.25238 -32.52643 -31.90651 -30.16388 -29.40541 -27.66801 -25.52941 -25.39204 -23.42964 -22.33134 -22.13463 -21.27268 -20.36978 -18.99041 -18.64440 -17.68216 -17.58916 -17.15345 -16.81693 -16.52811 -16.29463 -16.21475 -15.83297 -15.65980 -15.34390 -14.87677 -14.82738 -14.23469 -14.10981 -13.96372 -13.68991 -13.64304 -13.50137 -13.33535 -13.21943 -13.19006 -13.12245 -12.93641 -12.70470 -12.55920 -12.50279 -12.15373 -12.07682 -11.84750 -11.70880 -11.64615 -11.41538 -11.29566 -10.77821 -10.44390 -9.78883 -9.77611 -9.50719 -8.30139 -6.36033 -0.76282 0.34063 0.43163 1.36368 1.38933 1.50363 1.74640 2.35941 2.74840 2.78453 2.92755 3.05109 3.21229 3.33171 3.61112 3.70993 3.73746 3.93202 4.07095 4.15130 4.22244 4.30826 4.33597 4.36145 4.47102 4.56559 4.60645 4.65808 4.68607 4.71449 4.78076 4.84775 4.95954 4.97941 5.03673 5.09903 5.12929 5.34159 5.45965 5.46840 5.47286 5.58872 5.62491 5.76871 5.92332 6.03930 6.08695 6.25193 6.72458 7.28605 8.86931 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.002854 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.849758 B = 9808.389690 C =10894.508600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.503 5.503 3 C 0.076 3.924 4 C -0.132 4.132 5 C -0.108 4.108 6 C -0.121 4.121 7 C -0.127 4.127 8 C -0.109 4.109 9 C -0.136 4.136 10 C 0.107 3.893 11 H 0.110 0.890 12 C 0.108 3.892 13 N -1.104 6.104 14 S 2.624 3.376 15 O -0.992 6.992 16 O -0.992 6.992 17 C -0.610 4.610 18 C -0.104 4.104 19 C -0.005 4.005 20 C -0.544 4.544 21 H 0.029 0.971 22 C 0.000 4.000 23 N -0.953 5.953 24 Si 0.955 3.045 25 H -0.265 1.265 26 H -0.286 1.286 27 H -0.238 1.238 28 H 0.031 0.969 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.430 0.570 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.032 0.968 45 H 0.031 0.969 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.848 25.482 -6.208 33.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.224 5.224 3 C -0.051 4.051 4 C -0.134 4.134 5 C -0.127 4.127 6 C -0.139 4.139 7 C -0.145 4.145 8 C -0.127 4.127 9 C -0.138 4.138 10 C -0.003 4.003 11 H 0.128 0.872 12 C -0.019 4.019 13 N -0.867 5.867 14 S 2.720 3.280 15 O -0.982 6.982 16 O -0.982 6.982 17 C -0.741 4.741 18 C -0.143 4.143 19 C -0.043 4.043 20 C -0.582 4.582 21 H 0.048 0.952 22 C -0.196 4.196 23 N -0.593 5.593 24 Si 0.777 3.223 25 H -0.190 1.190 26 H -0.212 1.212 27 H -0.161 1.161 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.268 0.732 40 H 0.172 0.828 41 H 0.176 0.824 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.210 24.191 -6.515 32.825 hybrid contribution -1.272 0.859 0.793 1.728 sum 19.938 25.050 -5.722 32.523 Atomic orbital electron populations 1.23001 0.87223 1.03921 1.01893 1.65285 1.09449 1.15279 1.32380 1.21850 1.02312 0.89385 0.91585 1.21335 1.00722 0.93932 0.97366 1.20788 1.00041 0.96950 0.94896 1.21459 0.99196 0.99362 0.93870 1.21423 0.99770 0.92154 1.01110 1.20820 0.99730 0.99168 0.93022 1.21050 1.02335 0.95827 0.94588 1.21500 0.99120 0.92311 0.87356 0.87198 1.21673 0.99939 0.88729 0.91528 1.55389 1.76350 1.35481 1.19485 1.04356 0.77009 0.73396 0.73251 1.93548 1.87873 1.69190 1.47583 1.93535 1.68298 1.79775 1.56554 1.30514 1.20489 1.09001 1.14139 1.21175 0.97337 0.94834 1.00959 1.19501 0.92349 0.95580 0.96879 1.21569 0.99107 0.94538 1.42991 0.95220 1.26119 0.97698 1.01712 0.94088 1.70088 1.11617 1.32426 1.45193 0.85594 0.78775 0.79556 0.78338 1.18955 1.21174 1.16117 0.94999 0.89895 0.89200 0.88893 0.87782 0.84300 0.83720 0.84045 0.85072 0.89715 0.89243 0.73177 0.82832 0.82400 0.91873 0.91878 0.94948 0.95052 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.15 7.88 127.69 1.01 0.85 16 2 N -0.50 -6.97 5.35 -898.05 -4.80 -11.78 16 3 C 0.08 0.91 6.64 85.49 0.57 1.48 16 4 C -0.13 -1.86 6.15 -19.68 -0.12 -1.98 16 5 C -0.11 -1.32 10.04 22.25 0.22 -1.10 16 6 C -0.12 -1.41 10.05 22.27 0.22 -1.19 16 7 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 8 C -0.11 -1.62 9.84 22.25 0.22 -1.40 16 9 C -0.14 -2.10 5.62 -19.68 -0.11 -2.21 16 10 C 0.11 1.60 3.28 44.10 0.14 1.75 16 11 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 12 C 0.11 1.69 4.70 86.38 0.41 2.10 16 13 N -1.10 -19.84 4.32 -187.48 -0.81 -20.65 16 14 S 2.62 68.66 5.46 -56.49 -0.31 68.35 16 15 O -0.99 -32.83 18.08 -127.65 -2.31 -35.13 16 16 O -0.99 -32.56 17.50 -127.65 -2.23 -34.80 16 17 C -0.61 -15.26 6.07 71.98 0.44 -14.83 16 18 C -0.10 -3.89 5.16 30.59 0.16 -3.73 16 19 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 20 C -0.54 -31.41 9.66 25.60 0.25 -31.16 16 21 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 22 C 0.00 0.03 5.47 84.66 0.46 0.49 16 23 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 24 Si 0.96 42.93 27.47 68.60 1.88 44.81 16 25 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 28 H 0.03 0.43 7.71 -2.39 -0.02 0.41 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.13 5.04 -2.39 -0.01 1.12 16 31 H 0.09 0.90 7.80 -2.39 -0.02 0.88 16 32 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 35 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.08 1.12 6.75 -2.39 -0.02 1.10 16 38 H 0.09 1.45 7.69 -2.38 -0.02 1.43 16 39 H 0.43 6.89 7.62 -96.75 -0.74 6.15 16 40 H 0.15 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.16 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.03 1.36 7.20 -2.39 -0.02 1.35 16 45 H 0.03 1.30 7.57 -2.38 -0.02 1.28 16 46 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 Total: -1.00 -79.07 380.44 -3.88 -82.96 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.19 Total: 18.47 kcal Atomic # 6 Polarization: -56.62 SS G_CDS: 4.21 Total: -52.41 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -5.31 Total: -92.24 kcal Atomic # 8 Polarization: -65.39 SS G_CDS: -4.54 Total: -69.93 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.88 Total: 44.81 kcal Atomic # 16 Polarization: 68.66 SS G_CDS: -0.31 Total: 68.35 kcal Total: -79.07 -3.88 -82.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867794079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.750 kcal (2) G-P(sol) polarization free energy of solvation -79.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds