Wall clock time and date at job start Sat Apr 11 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99993 * 2 1 4 4 C 1.53006 * 109.46944 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47026 * 183.80540 * 4 3 2 6 6 N 1.46497 * 109.52178 * 305.58159 * 5 4 3 7 7 C 1.34776 * 120.00177 * 297.50704 * 6 5 4 8 8 O 1.21762 * 119.99776 * 5.15534 * 7 6 5 9 9 C 1.46234 * 120.00604 * 185.15061 * 7 6 5 10 10 S 1.75669 * 125.22498 * 359.97438 * 9 7 6 11 11 C 1.75475 * 92.09019 * 180.02562 * 10 9 7 12 12 C 1.32758 * 111.36683 * 359.97438 * 11 10 9 13 13 C 1.39543 * 125.23028 * 179.97438 * 9 7 6 14 14 C 1.40537 * 123.71736 * 359.72064 * 13 9 7 15 15 H 1.08006 * 119.99563 * 24.87063 * 14 13 9 16 16 C 1.40306 * 120.00182 * 204.87410 * 14 13 9 17 17 N 1.30637 * 120.00105 * 8.46521 * 16 14 13 18 18 Si 1.86798 * 120.00050 * 188.46438 * 16 14 13 19 19 H 1.48497 * 109.47218 * 90.00009 * 18 16 14 20 20 H 1.48495 * 109.47315 * 210.00154 * 18 16 14 21 21 H 1.48499 * 109.47058 * 330.00198 * 18 16 14 22 22 C 1.53123 * 109.52383 * 65.70433 * 5 4 3 23 23 C 1.53172 * 109.21155 * 177.56373 * 22 5 4 24 24 N 1.46853 * 109.55405 * 300.86336 * 23 22 5 25 25 C 1.46840 * 111.19956 * 61.73824 * 24 23 22 26 26 C 1.53043 * 109.52577 * 298.25784 * 25 24 23 27 27 H 1.08996 * 109.46902 * 60.00440 * 1 2 3 28 28 H 1.09004 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47181 * 299.99899 * 1 2 3 30 30 H 1.09000 * 109.46884 * 60.00009 * 3 2 1 31 31 H 1.09000 * 109.47056 * 299.99529 * 3 2 1 32 32 H 1.08999 * 109.47464 * 63.80765 * 4 3 2 33 33 H 1.08996 * 109.47079 * 303.80287 * 4 3 2 34 34 H 0.97000 * 120.00479 * 117.51589 * 6 5 4 35 35 H 1.08007 * 124.31612 * 179.97438 * 11 10 9 36 36 H 1.07995 * 122.79099 * 180.02562 * 12 11 10 37 37 H 0.96999 * 120.00609 * 179.97438 * 17 16 14 38 38 H 1.09007 * 109.50341 * 297.56753 * 22 5 4 39 39 H 1.08999 * 109.50330 * 57.68291 * 22 5 4 40 40 H 1.08995 * 109.44866 * 180.83720 * 23 22 5 41 41 H 1.08999 * 109.43473 * 60.87898 * 23 22 5 42 42 H 1.00896 * 110.99688 * 185.84006 * 24 23 22 43 43 H 1.09007 * 109.46618 * 178.24311 * 25 24 23 44 44 H 1.09007 * 109.45342 * 58.27139 * 25 24 23 45 45 H 1.08993 * 109.50328 * 299.23972 * 26 25 24 46 46 H 1.08998 * 109.50300 * 179.11856 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1575 2.5791 0.0964 6 7 3.6289 3.4256 -0.9761 7 6 3.8568 3.1020 -2.2644 8 8 4.4203 2.0582 -2.5394 9 6 3.4274 4.0043 -3.3320 10 16 2.6057 5.5385 -3.0928 11 6 2.5238 5.8373 -4.8200 12 6 3.0784 4.8472 -5.5089 13 6 3.6074 3.7791 -4.6974 14 6 4.2397 2.6396 -5.2233 15 1 4.2593 1.7218 -4.6542 16 6 4.8456 2.6941 -6.4876 17 7 4.9687 3.8393 -7.1041 18 14 5.4765 1.1293 -7.2894 19 1 4.3963 0.5224 -8.1079 20 1 6.6355 1.4517 -8.1599 21 1 5.8990 0.1699 -6.2376 22 6 3.8156 3.1998 1.4538 23 6 4.4919 4.5696 1.5663 24 7 5.9457 4.4126 1.4305 25 6 6.2998 3.8613 0.1163 26 6 5.6788 2.4713 -0.0395 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8623 0.7035 -0.9212 33 1 3.8522 0.5861 0.8548 34 1 3.1149 4.2191 -0.7590 35 1 2.0791 6.7148 -5.2657 36 1 3.1292 4.8421 -6.5877 37 1 5.3879 3.8772 -7.9780 38 1 2.7353 3.3177 1.5383 39 1 4.1750 2.5502 2.2519 40 1 4.2632 5.0086 2.5374 41 1 4.1218 5.2228 0.7761 42 1 6.4208 5.2872 1.5957 43 1 7.3842 3.7859 0.0342 44 1 5.9211 4.5182 -0.6669 45 1 6.0674 1.8102 0.7351 46 1 5.9288 2.0690 -1.0212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868044972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:23:11 Heat of formation + Delta-G solvation = -65.078719 kcal Electronic energy + Delta-G solvation = -28614.204711 eV Core-core repulsion = 24822.651682 eV Total energy + Delta-G solvation = -3791.553029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.04989 -37.53903 -37.30139 -35.91340 -34.11888 -33.07132 -31.41367 -30.68624 -29.22610 -28.81660 -26.30857 -26.05722 -23.84357 -22.92831 -22.31364 -20.97876 -20.40290 -18.79113 -18.44148 -17.67305 -16.66279 -16.02145 -15.82988 -15.71621 -15.41541 -14.96620 -14.60817 -14.45979 -14.20108 -14.01502 -13.73035 -13.39111 -13.14294 -12.59803 -12.55928 -12.46984 -12.24163 -11.96353 -11.87389 -11.58234 -11.57107 -11.46780 -11.12140 -11.07902 -10.98596 -10.91409 -10.83315 -10.43624 -10.23224 -10.17089 -10.03875 -9.64248 -9.40773 -9.28355 -8.45447 -8.26288 -8.08935 -7.50769 -7.16747 -7.05353 -4.54795 2.13483 2.95189 2.99276 3.07555 3.09106 3.61317 3.78385 3.84810 3.91069 4.09686 4.36952 4.42829 4.84492 4.99370 5.17375 5.24967 5.34458 5.36864 5.45763 5.48815 5.54254 5.59619 5.64335 5.71901 5.75970 5.81220 5.96224 6.00968 6.09896 6.16010 6.24200 6.30579 6.36519 6.63159 6.65888 6.73667 6.83194 7.14038 7.14886 7.18236 7.37312 7.38012 7.45484 7.48097 7.69552 8.34963 8.45788 8.59506 8.77845 9.61507 9.85825 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.004520 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.315181 B = 6192.850926 C = 6721.618176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.069 3.931 4 C -0.126 4.126 5 C 0.193 3.807 6 N -0.743 5.743 7 C 0.605 3.395 8 O -0.555 6.555 9 C -0.428 4.428 10 S -0.058 6.058 11 C -0.207 4.207 12 C -0.097 4.097 13 C 0.141 3.859 14 C -0.376 4.376 15 H 0.112 0.888 16 C 0.068 3.932 17 N -0.780 5.780 18 Si 0.923 3.077 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.253 1.253 22 C -0.120 4.120 23 C 0.058 3.942 24 N -0.689 5.689 25 C 0.060 3.940 26 C -0.124 4.124 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.386 0.614 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.287 0.713 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.033 0.967 42 H 0.338 0.662 43 H 0.069 0.931 44 H 0.039 0.961 45 H 0.067 0.933 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 0.796 10.599 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.008 4.008 4 C -0.164 4.164 5 C 0.106 3.894 6 N -0.397 5.397 7 C 0.402 3.598 8 O -0.438 6.438 9 C -0.547 4.547 10 S 0.197 5.803 11 C -0.341 4.341 12 C -0.130 4.130 13 C 0.130 3.870 14 C -0.407 4.407 15 H 0.129 0.871 16 C -0.154 4.154 17 N -0.405 5.405 18 Si 0.746 3.254 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.177 1.177 22 C -0.158 4.158 23 C -0.072 4.072 24 N -0.320 5.320 25 C -0.069 4.069 26 C -0.162 4.162 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.220 0.780 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.051 0.949 42 H 0.155 0.845 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.961 0.184 11.745 12.114 hybrid contribution 0.025 0.433 -2.197 2.240 sum -2.936 0.617 9.548 10.008 Atomic orbital electron populations 1.22678 0.81680 1.02227 0.99770 1.87851 1.19191 1.28800 1.95395 1.22524 0.94451 0.83935 0.99847 1.21911 0.92843 0.97118 1.04550 1.20008 0.93486 0.89547 0.86381 1.46017 1.58974 1.29262 1.05435 1.16743 0.77874 0.84815 0.80372 1.90607 1.45113 1.25457 1.82580 1.22659 1.33988 1.02487 0.95570 1.82696 1.68032 1.22315 1.07273 1.24923 1.09605 1.03539 0.96005 1.21746 0.96508 0.93515 1.01200 1.17932 0.89036 0.91466 0.88608 1.20018 1.23625 0.98565 0.98460 0.87053 1.26361 0.94258 0.98202 0.96575 1.69662 1.30432 1.26523 1.13848 0.86030 0.78822 0.81167 0.79372 1.18965 1.20008 1.17655 1.21958 0.99907 0.97004 0.96977 1.21901 0.88395 0.96544 1.00348 1.60369 1.07436 1.32259 1.31973 1.21873 0.99599 0.96412 0.88979 1.21961 0.93779 0.96519 1.03987 0.94090 0.90039 0.94559 0.94174 0.92816 0.88443 0.91479 0.78023 0.84621 0.83815 0.90145 0.91317 0.89998 0.91107 0.94892 0.84530 0.91288 0.94290 0.91400 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.39 -6.44 10.70 -35.23 -0.38 -6.82 16 3 C 0.07 1.09 5.50 37.16 0.20 1.30 16 4 C -0.13 -2.08 4.36 -26.73 -0.12 -2.19 16 5 C 0.19 3.01 0.35 -131.70 -0.05 2.97 16 6 N -0.74 -13.34 3.21 -48.92 -0.16 -13.50 16 7 C 0.61 13.74 7.05 -13.05 -0.09 13.64 16 8 O -0.55 -13.93 10.76 5.13 0.06 -13.87 16 9 C -0.43 -10.38 6.51 -35.89 -0.23 -10.61 16 10 S -0.06 -1.20 22.26 -107.50 -2.39 -3.59 16 11 C -0.21 -4.42 11.07 28.86 0.32 -4.10 16 12 C -0.10 -2.33 9.03 -39.12 -0.35 -2.68 16 13 C 0.14 3.65 5.67 -106.21 -0.60 3.05 16 14 C -0.38 -9.89 8.49 -37.94 -0.32 -10.22 16 15 H 0.11 3.08 6.08 -52.48 -0.32 2.76 16 16 C 0.07 1.62 5.40 -17.28 -0.09 1.53 16 17 N -0.78 -18.67 10.82 55.57 0.60 -18.07 16 18 Si 0.92 18.45 29.57 -169.99 -5.03 13.42 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.25 -5.24 7.11 56.52 0.40 -4.84 16 22 C -0.12 -1.51 4.64 -26.58 -0.12 -1.63 16 23 C 0.06 0.69 6.39 -3.76 -0.02 0.67 16 24 N -0.69 -8.72 6.85 -113.73 -0.78 -9.49 16 25 C 0.06 0.91 6.40 -3.83 -0.02 0.89 16 26 C -0.12 -2.02 4.68 -26.65 -0.12 -2.14 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.55 6.48 -51.93 -0.34 0.21 16 31 H 0.05 0.97 7.50 -51.93 -0.39 0.58 16 32 H 0.10 1.96 6.35 -51.93 -0.33 1.63 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.39 6.58 6.66 -40.82 -0.27 6.31 16 35 H 0.14 2.47 8.06 -52.48 -0.42 2.05 16 36 H 0.14 3.44 6.43 -52.49 -0.34 3.10 16 37 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 38 H 0.07 0.79 6.63 -51.92 -0.34 0.45 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.03 0.43 7.07 -51.93 -0.37 0.07 16 42 H 0.34 3.68 8.90 -39.29 -0.35 3.33 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.04 0.68 7.69 -51.93 -0.40 0.29 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.10 1.88 6.12 -51.93 -0.32 1.56 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -27.84 369.43 -9.73 -37.57 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -6.70 Total: 16.80 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -0.52 Total: -8.02 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.33 Total: -41.06 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.32 Total: -20.69 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -2.39 Total: -3.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.84 -9.73 -37.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868044972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.505 kcal (2) G-P(sol) polarization free energy of solvation -27.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds