Wall clock time and date at job start Sat Apr 11 2020 05:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99993 * 2 1 4 4 C 1.53006 * 109.46944 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47026 * 183.80540 * 4 3 2 6 6 N 1.46497 * 109.52178 * 305.58159 * 5 4 3 7 7 C 1.34776 * 120.00177 * 297.50704 * 6 5 4 8 8 O 1.21762 * 119.99776 * 5.15534 * 7 6 5 9 9 C 1.46234 * 120.00604 * 185.15061 * 7 6 5 10 10 S 1.75669 * 125.22498 * 359.97438 * 9 7 6 11 11 C 1.75475 * 92.09019 * 180.02562 * 10 9 7 12 12 C 1.32758 * 111.36683 * 359.97438 * 11 10 9 13 13 C 1.39543 * 125.23028 * 179.97438 * 9 7 6 14 14 C 1.40537 * 123.71736 * 359.72064 * 13 9 7 15 15 H 1.08006 * 119.99563 * 24.87063 * 14 13 9 16 16 C 1.40306 * 120.00182 * 204.87410 * 14 13 9 17 17 N 1.30637 * 120.00105 * 8.46521 * 16 14 13 18 18 Si 1.86798 * 120.00050 * 188.46438 * 16 14 13 19 19 H 1.48497 * 109.47218 * 90.00009 * 18 16 14 20 20 H 1.48495 * 109.47315 * 210.00154 * 18 16 14 21 21 H 1.48499 * 109.47058 * 330.00198 * 18 16 14 22 22 C 1.53123 * 109.52383 * 65.70433 * 5 4 3 23 23 C 1.53172 * 109.21155 * 177.56373 * 22 5 4 24 24 N 1.46853 * 109.55405 * 300.86336 * 23 22 5 25 25 C 1.46840 * 111.19956 * 61.73824 * 24 23 22 26 26 C 1.53043 * 109.52577 * 298.25784 * 25 24 23 27 27 H 1.08996 * 109.46902 * 60.00440 * 1 2 3 28 28 H 1.09004 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47181 * 299.99899 * 1 2 3 30 30 H 1.09000 * 109.46884 * 60.00009 * 3 2 1 31 31 H 1.09000 * 109.47056 * 299.99529 * 3 2 1 32 32 H 1.08999 * 109.47464 * 63.80765 * 4 3 2 33 33 H 1.08996 * 109.47079 * 303.80287 * 4 3 2 34 34 H 0.97000 * 120.00479 * 117.51589 * 6 5 4 35 35 H 1.08007 * 124.31612 * 179.97438 * 11 10 9 36 36 H 1.07995 * 122.79099 * 180.02562 * 12 11 10 37 37 H 0.96999 * 120.00609 * 179.97438 * 17 16 14 38 38 H 1.09007 * 109.50341 * 297.56753 * 22 5 4 39 39 H 1.08999 * 109.50330 * 57.68291 * 22 5 4 40 40 H 1.08995 * 109.44866 * 180.83720 * 23 22 5 41 41 H 1.08999 * 109.43473 * 60.87898 * 23 22 5 42 42 H 1.00896 * 110.99688 * 185.84006 * 24 23 22 43 43 H 1.09007 * 109.46618 * 178.24311 * 25 24 23 44 44 H 1.09007 * 109.45342 * 58.27139 * 25 24 23 45 45 H 1.08993 * 109.50328 * 299.23972 * 26 25 24 46 46 H 1.08998 * 109.50300 * 179.11856 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1575 2.5791 0.0964 6 7 3.6289 3.4256 -0.9761 7 6 3.8568 3.1020 -2.2644 8 8 4.4203 2.0582 -2.5394 9 6 3.4274 4.0043 -3.3320 10 16 2.6057 5.5385 -3.0928 11 6 2.5238 5.8373 -4.8200 12 6 3.0784 4.8472 -5.5089 13 6 3.6074 3.7791 -4.6974 14 6 4.2397 2.6396 -5.2233 15 1 4.2593 1.7218 -4.6542 16 6 4.8456 2.6941 -6.4876 17 7 4.9687 3.8393 -7.1041 18 14 5.4765 1.1293 -7.2894 19 1 4.3963 0.5224 -8.1079 20 1 6.6355 1.4517 -8.1599 21 1 5.8990 0.1699 -6.2376 22 6 3.8156 3.1998 1.4538 23 6 4.4919 4.5696 1.5663 24 7 5.9457 4.4126 1.4305 25 6 6.2998 3.8613 0.1163 26 6 5.6788 2.4713 -0.0395 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8623 0.7035 -0.9212 33 1 3.8522 0.5861 0.8548 34 1 3.1149 4.2191 -0.7590 35 1 2.0791 6.7148 -5.2657 36 1 3.1292 4.8421 -6.5877 37 1 5.3879 3.8772 -7.9780 38 1 2.7353 3.3177 1.5383 39 1 4.1750 2.5502 2.2519 40 1 4.2632 5.0086 2.5374 41 1 4.1218 5.2228 0.7761 42 1 6.4208 5.2872 1.5957 43 1 7.3842 3.7859 0.0342 44 1 5.9211 4.5182 -0.6669 45 1 6.0674 1.8102 0.7351 46 1 5.9288 2.0690 -1.0212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868044972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:23:10 Heat of formation + Delta-G solvation = -83.884339 kcal Electronic energy + Delta-G solvation = -28615.020183 eV Core-core repulsion = 24822.651682 eV Total energy + Delta-G solvation = -3792.368502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.45545 -39.00953 -38.65243 -37.64643 -35.47796 -34.89530 -32.96208 -31.84620 -30.75108 -30.29524 -27.93693 -27.30677 -25.09222 -24.31669 -23.82411 -22.41303 -21.86090 -20.61379 -19.89605 -19.34560 -17.82036 -17.57116 -17.24869 -17.11351 -16.97557 -16.27948 -16.12748 -15.77219 -15.51051 -15.36376 -15.33926 -14.80942 -14.36222 -14.20860 -14.00424 -13.93402 -13.78131 -13.59693 -13.20819 -13.06315 -13.04796 -12.79736 -12.68450 -12.63965 -12.25203 -12.16803 -12.11763 -12.05728 -12.01304 -11.47814 -11.43379 -11.28405 -11.05875 -10.62149 -10.05170 -9.85146 -9.38697 -9.29965 -8.93259 -8.84283 -6.43640 0.32110 1.31622 1.32652 1.35629 1.45459 1.78270 1.98903 2.16295 2.54229 2.63077 2.81931 3.31212 3.33848 3.67351 3.83711 4.01473 4.14070 4.24029 4.26062 4.35092 4.42516 4.47848 4.48245 4.50806 4.56280 4.63163 4.77915 4.83078 4.88825 4.93828 4.96947 5.00959 5.02510 5.12392 5.19029 5.25582 5.29091 5.33891 5.40138 5.58647 5.84950 5.93808 6.03493 6.21811 6.41784 6.50551 6.61036 6.75274 7.04998 7.87024 8.09153 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.004520 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.315181 B = 6192.850926 C = 6721.618176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.076 3.924 4 C -0.122 4.122 5 C 0.190 3.810 6 N -0.725 5.725 7 C 0.601 3.399 8 O -0.586 6.586 9 C -0.461 4.461 10 S 0.006 5.994 11 C -0.196 4.196 12 C -0.128 4.128 13 C 0.112 3.888 14 C -0.417 4.417 15 H 0.083 0.917 16 C 0.037 3.963 17 N -0.798 5.798 18 Si 0.984 3.016 19 H -0.252 1.252 20 H -0.256 1.256 21 H -0.273 1.273 22 C -0.113 4.113 23 C 0.056 3.944 24 N -0.681 5.681 25 C 0.069 3.931 26 C -0.122 4.122 27 H 0.033 0.967 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.024 0.976 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.393 0.607 35 H 0.173 0.827 36 H 0.138 0.862 37 H 0.299 0.701 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.022 0.978 42 H 0.351 0.649 43 H 0.074 0.926 44 H 0.009 0.991 45 H 0.083 0.917 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.044 2.120 12.857 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C 0.000 4.000 4 C -0.160 4.160 5 C 0.104 3.896 6 N -0.377 5.377 7 C 0.396 3.604 8 O -0.471 6.471 9 C -0.579 4.579 10 S 0.262 5.738 11 C -0.330 4.330 12 C -0.160 4.160 13 C 0.101 3.899 14 C -0.448 4.448 15 H 0.101 0.899 16 C -0.182 4.182 17 N -0.423 5.423 18 Si 0.804 3.196 19 H -0.176 1.176 20 H -0.179 1.179 21 H -0.198 1.198 22 C -0.151 4.151 23 C -0.073 4.073 24 N -0.313 5.313 25 C -0.060 4.060 26 C -0.161 4.161 27 H 0.052 0.948 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.228 0.772 35 H 0.191 0.809 36 H 0.156 0.844 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.040 0.960 42 H 0.170 0.830 43 H 0.092 0.908 44 H 0.027 0.973 45 H 0.101 0.899 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.905 1.557 14.042 14.657 hybrid contribution 0.250 0.072 -2.750 2.762 sum -3.655 1.629 11.292 11.980 Atomic orbital electron populations 1.22911 0.79669 1.03819 1.00575 1.87816 1.21481 1.28991 1.95535 1.22421 0.93723 0.84024 0.99832 1.21830 0.93737 0.97520 1.02939 1.20213 0.92811 0.89112 0.87456 1.45785 1.58049 1.29414 1.04460 1.16819 0.77547 0.84243 0.81760 1.90602 1.46278 1.26723 1.83447 1.23222 1.34134 1.04685 0.95892 1.82273 1.66169 1.19173 1.06229 1.25415 1.07410 1.03595 0.96580 1.21627 0.98932 0.94420 1.01045 1.18358 0.89396 0.92293 0.89871 1.19933 1.26565 0.98189 1.00136 0.89932 1.26963 0.93933 1.01077 0.96251 1.69649 1.30660 1.27558 1.14453 0.85158 0.79109 0.77190 0.78106 1.17612 1.17927 1.19768 1.21961 1.01244 0.97368 0.94503 1.22008 0.87581 0.96013 1.01708 1.60349 1.08253 1.33121 1.29582 1.21687 0.99702 0.95086 0.89574 1.21871 0.94670 0.97497 1.02037 0.94802 0.88209 0.92136 0.90963 0.95743 0.93013 0.89622 0.77206 0.80919 0.84449 0.89015 0.89512 0.88411 0.87874 0.95961 0.83029 0.90760 0.97312 0.89875 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.42 -13.51 10.70 -148.98 -1.59 -15.11 16 3 C 0.08 2.38 5.50 71.98 0.40 2.78 16 4 C -0.12 -4.06 4.36 30.60 0.13 -3.93 16 5 C 0.19 5.86 0.35 3.68 0.00 5.87 16 6 N -0.72 -26.30 3.21 -426.87 -1.37 -27.67 16 7 C 0.60 28.65 7.05 86.32 0.61 29.25 16 8 O -0.59 -31.80 10.76 -4.55 -0.05 -31.85 16 9 C -0.46 -23.07 6.51 24.66 0.16 -22.91 16 10 S 0.01 0.24 22.26 -56.49 -1.26 -1.02 16 11 C -0.20 -8.15 11.07 66.64 0.74 -7.42 16 12 C -0.13 -6.24 9.03 22.61 0.20 -6.04 16 13 C 0.11 6.10 5.67 -20.89 -0.12 5.98 16 14 C -0.42 -23.47 8.49 23.33 0.20 -23.27 16 15 H 0.08 4.99 6.08 -2.91 -0.02 4.98 16 16 C 0.04 1.86 5.40 85.37 0.46 2.32 16 17 N -0.80 -39.29 10.82 21.89 0.24 -39.05 16 18 Si 0.98 39.35 29.57 68.60 2.03 41.38 16 19 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 20 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 C -0.11 -2.47 4.64 30.69 0.14 -2.33 16 23 C 0.06 1.16 6.39 86.37 0.55 1.71 16 24 N -0.68 -15.50 6.85 -513.74 -3.52 -19.02 16 25 C 0.07 2.07 6.40 86.33 0.55 2.62 16 26 C -0.12 -4.05 4.68 30.65 0.14 -3.91 16 27 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.77 6.48 -2.39 -0.02 1.76 16 31 H 0.02 0.89 7.50 -2.39 -0.02 0.88 16 32 H 0.05 2.22 6.35 -2.39 -0.02 2.20 16 33 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.39 13.05 6.66 -92.71 -0.62 12.43 16 35 H 0.17 5.79 8.06 -2.91 -0.02 5.76 16 36 H 0.14 6.77 6.43 -2.91 -0.02 6.76 16 37 H 0.30 13.01 8.29 -92.71 -0.77 12.24 16 38 H 0.09 1.63 6.63 -2.38 -0.02 1.62 16 39 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.02 0.52 7.07 -2.39 -0.02 0.50 16 42 H 0.35 6.66 8.90 -89.70 -0.80 5.87 16 43 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.01 0.31 7.69 -2.38 -0.02 0.29 16 45 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.05 2.21 6.12 -2.39 -0.01 2.20 16 Total: -1.00 -65.78 369.43 -0.49 -66.28 By element: Atomic # 1 Polarization: 43.86 SS G_CDS: -0.39 Total: 43.47 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 5.42 Total: -17.41 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -4.65 Total: -85.74 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -1.64 Total: -46.96 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.26 Total: -1.02 kcal Total: -65.78 -0.49 -66.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868044972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.607 kcal (2) G-P(sol) polarization free energy of solvation -65.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds