Wall clock time and date at job start Sat Apr 11 2020 05:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00339 * 2 1 4 4 H 1.48494 * 109.47683 * 240.00448 * 3 2 1 5 5 H 1.48502 * 109.47301 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47115 * 119.99922 * 3 2 1 7 7 C 1.37877 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00248 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47380 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00010 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00289 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99745 * 180.02562 * 11 10 9 14 14 O 1.45205 * 109.47064 * 180.02562 * 13 11 10 15 15 C 1.34229 * 117.00171 * 180.02562 * 14 13 11 16 16 O 1.20823 * 119.99622 * 359.97438 * 15 14 13 17 17 C 1.50695 * 120.00041 * 179.97438 * 15 14 13 18 18 H 1.08998 * 110.85747 * 56.20993 * 17 15 14 19 19 C 1.54628 * 111.00319 * 292.39578 * 17 15 14 20 20 C 1.51287 * 104.25931 * 266.44512 * 19 17 15 21 21 O 1.21283 * 124.94488 * 164.00410 * 20 19 17 22 22 N 1.34419 * 110.11247 * 344.15087 * 20 19 17 23 23 C 1.46494 * 124.35081 * 179.43567 * 22 20 19 24 24 C 1.54961 * 110.76455 * 306.32717 * 23 22 20 25 25 C 1.54270 * 104.16191 * 156.22179 * 24 23 22 26 26 C 1.53869 * 106.63967 * 336.44607 * 25 24 23 27 27 C 1.54268 * 106.60115 * 359.97438 * 26 25 24 28 28 C 1.46766 * 111.30121 * 359.16163 * 22 20 19 29 29 H 0.97008 * 119.99684 * 359.97438 * 1 2 3 30 30 H 1.09010 * 109.47265 * 60.00286 * 9 7 2 31 31 H 1.08997 * 109.47409 * 300.00595 * 9 7 2 32 32 H 0.97001 * 119.99838 * 0.02562 * 10 9 7 33 33 H 1.08997 * 109.47411 * 60.00326 * 13 11 10 34 34 H 1.09000 * 109.46963 * 299.99660 * 13 11 10 35 35 H 1.08997 * 110.48840 * 25.34732 * 19 17 15 36 36 H 1.09004 * 110.48428 * 147.85815 * 19 17 15 37 37 H 1.09003 * 110.67701 * 182.92662 * 23 22 20 38 38 H 1.08997 * 110.47708 * 37.56776 * 24 23 22 39 39 H 1.09002 * 110.53308 * 274.90168 * 24 23 22 40 40 H 1.09002 * 110.03399 * 217.13605 * 25 24 23 41 41 H 1.08995 * 110.02943 * 95.75505 * 25 24 23 42 42 H 1.08999 * 110.03405 * 119.26051 * 26 25 24 43 43 H 1.09001 * 110.03705 * 240.64196 * 26 25 24 44 44 H 1.08997 * 110.48788 * 142.28685 * 27 26 25 45 45 H 1.09001 * 110.48482 * 264.93365 * 27 26 25 46 46 H 1.09005 * 110.24642 * 136.28449 * 28 22 20 47 47 H 1.08994 * 110.24849 * 258.28885 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7535 -4.8834 -0.0015 12 8 0.5611 -5.1049 -0.0006 13 6 2.7328 -6.0288 -0.0022 14 8 2.0067 -7.2863 -0.0023 15 6 2.7377 -8.4121 -0.0023 16 8 3.9443 -8.3489 -0.0028 17 6 2.0535 -9.7548 -0.0019 18 1 1.3723 -9.8435 -0.8481 19 6 1.3123 -9.9986 1.3331 20 6 2.3119 -10.7529 2.1820 21 8 2.2345 -10.8964 3.3838 22 7 3.3002 -11.2382 1.4108 23 6 4.4395 -12.0088 1.9149 24 6 5.1610 -11.2424 3.0522 25 6 5.8749 -12.3473 3.8581 26 6 5.1112 -13.6550 3.5852 27 6 3.9588 -13.2998 2.6231 28 6 3.0877 -10.9023 -0.0021 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8904 31 1 0.6245 -2.5570 0.8896 32 1 3.1565 -3.4355 -0.0021 33 1 3.3601 -5.9712 0.8874 34 1 3.3588 -5.9711 -0.8926 35 1 1.0482 -9.0505 1.8016 36 1 0.4205 -10.6036 1.1692 37 1 5.1313 -12.2464 1.1067 38 1 4.4379 -10.7201 3.6785 39 1 5.8869 -10.5414 2.6401 40 1 5.8445 -12.1123 4.9221 41 1 6.9087 -12.4426 3.5264 42 1 5.7742 -14.3846 3.1204 43 1 4.7108 -14.0550 4.5168 44 1 3.8074 -14.0991 1.8977 45 1 3.0413 -13.1102 3.1803 46 1 4.0214 -10.5686 -0.4550 47 1 2.6940 -11.7648 -0.5397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007331100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:05 Heat of formation + Delta-G solvation = -164.227476 kcal Electronic energy + Delta-G solvation = -29074.318765 eV Core-core repulsion = 24835.713453 eV Total energy + Delta-G solvation = -4238.605312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.52823 -40.27357 -38.79312 -37.76987 -36.89789 -36.15298 -34.29212 -32.71524 -32.43489 -29.41487 -29.01729 -28.14671 -27.89659 -26.70831 -24.14670 -22.56068 -22.11186 -20.68798 -20.60952 -19.99287 -19.29870 -18.26804 -17.58695 -17.34296 -16.83465 -16.67258 -16.04047 -15.76396 -15.32113 -15.27555 -15.04870 -14.74536 -14.53225 -14.23776 -13.96601 -13.89525 -13.50915 -13.43663 -13.18827 -12.81655 -12.67393 -12.32349 -12.14388 -12.03208 -11.93817 -11.80986 -11.74933 -11.55680 -11.43276 -11.24504 -11.05787 -10.93778 -10.80397 -10.73062 -10.67271 -10.36926 -9.87772 -9.48404 -9.23985 -9.00127 -8.80588 -8.03019 -6.21730 -4.29443 1.88457 2.15955 2.31072 2.59941 3.11782 3.22755 3.27800 3.29083 3.76994 3.84250 3.90427 4.24288 4.27162 4.30504 4.35020 4.48945 4.57677 4.80843 4.89920 4.98036 5.04415 5.09447 5.13573 5.13972 5.16137 5.17982 5.22238 5.27591 5.29520 5.35671 5.42293 5.50682 5.61450 5.71915 5.77834 5.91935 6.05384 6.17998 6.36032 6.78910 7.18562 7.25553 7.42517 7.46222 7.58605 7.86923 7.89326 8.45436 8.67381 8.91683 9.36945 10.88281 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.023007 B = 0.001891 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.710515 B =14803.972031 C =15234.321214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.533 6.533 13 C 0.049 3.951 14 O -0.324 6.324 15 C 0.467 3.533 16 O -0.501 6.501 17 C -0.096 4.096 18 H 0.140 0.860 19 C -0.147 4.147 20 C 0.517 3.483 21 O -0.520 6.520 22 N -0.611 5.611 23 C 0.155 3.845 24 C -0.140 4.140 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.137 4.137 28 C 0.114 3.886 29 H 0.267 0.733 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.393 0.607 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.977 -28.023 0.233 29.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.282 3.718 12 O -0.411 6.411 13 C -0.029 4.029 14 O -0.238 6.238 15 C 0.309 3.691 16 O -0.389 6.389 17 C -0.116 4.116 18 H 0.158 0.842 19 C -0.188 4.188 20 C 0.305 3.695 21 O -0.396 6.396 22 N -0.345 5.345 23 C 0.052 3.948 24 C -0.178 4.178 25 C -0.158 4.158 26 C -0.158 4.158 27 C -0.175 4.175 28 C -0.009 4.009 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.226 0.774 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.117 0.883 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.308 -28.077 0.896 29.594 hybrid contribution 1.074 1.194 -0.174 1.616 sum 10.382 -26.883 0.722 28.827 Atomic orbital electron populations 1.69963 1.06114 1.27555 1.48493 1.24951 0.94947 0.99497 0.94573 0.86440 0.79393 0.82154 0.78723 1.20037 1.21026 1.20029 1.21164 0.93296 0.90307 1.53754 0.91817 1.19181 0.88140 0.81487 0.98057 1.46373 1.11549 1.05350 1.72327 1.19858 0.89096 0.83977 0.78854 1.90714 1.16261 1.84528 1.49583 1.22915 0.94445 0.80850 1.04662 1.86542 1.40258 1.13949 1.83057 1.23278 0.86421 0.86722 0.72643 1.90678 1.15327 1.87773 1.45123 1.21950 0.98676 0.88858 1.02077 0.84191 1.22417 0.98875 1.04005 0.93461 1.20778 0.82350 0.78935 0.87467 1.90723 1.76150 1.59598 1.13132 1.48231 1.23880 1.54493 1.07861 1.22025 0.85972 0.90502 0.96278 1.22751 0.99805 0.98093 0.97168 1.22034 0.98922 0.94401 1.00469 1.22031 0.96822 0.97469 0.99460 1.22735 0.99835 0.96378 0.98590 1.22104 1.00118 0.95801 0.82917 0.92288 0.95221 0.95218 0.77420 0.88485 0.88364 0.86522 0.85903 0.88516 0.89731 0.91335 0.91552 0.91754 0.91767 0.91580 0.91533 0.90150 0.88344 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.62 13.29 55.43 0.74 -24.88 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.55 -14.51 9.28 -34.44 -0.32 -14.83 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.49 5.43 -5.20 -0.03 6.46 16 10 N -0.71 -14.27 5.55 -61.47 -0.34 -14.61 16 11 C 0.50 9.68 7.91 -10.99 -0.09 9.59 16 12 O -0.53 -12.64 16.50 -14.10 -0.23 -12.88 16 13 C 0.05 0.70 5.94 36.01 0.21 0.91 16 14 O -0.32 -4.62 9.74 -45.90 -0.45 -5.07 16 15 C 0.47 5.44 7.20 36.00 0.26 5.70 16 16 O -0.50 -6.68 15.28 -18.75 -0.29 -6.96 16 17 C -0.10 -0.72 3.66 -90.14 -0.33 -1.05 16 18 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 19 C -0.15 -1.25 6.40 -26.74 -0.17 -1.42 16 20 C 0.52 5.72 7.24 -10.86 -0.08 5.65 16 21 O -0.52 -7.58 14.88 5.55 0.08 -7.50 16 22 N -0.61 -5.42 2.96 -162.54 -0.48 -5.90 16 23 C 0.15 1.27 3.58 -65.90 -0.24 1.03 16 24 C -0.14 -1.33 6.32 -25.03 -0.16 -1.49 16 25 C -0.12 -0.92 6.80 -25.61 -0.17 -1.09 16 26 C -0.12 -0.83 6.80 -25.62 -0.17 -1.00 16 27 C -0.14 -1.07 6.36 -25.07 -0.16 -1.23 16 28 C 0.11 0.73 6.65 -3.12 -0.02 0.71 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.03 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.39 6.65 8.32 -40.82 -0.34 6.31 16 33 H 0.10 1.25 8.13 -51.93 -0.42 0.82 16 34 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 35 H 0.12 1.18 7.89 -51.93 -0.41 0.77 16 36 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.62 8.11 -51.93 -0.42 0.20 16 38 H 0.08 1.05 6.17 -51.93 -0.32 0.73 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.82 6.62 -51.93 -0.34 0.48 16 46 H 0.10 0.69 7.02 -51.93 -0.36 0.32 16 47 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -35.29 389.93 -8.90 -44.19 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.23 Total: 2.62 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -1.56 Total: 9.60 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.09 Total: -45.39 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.88 Total: -32.41 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.29 -8.90 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007331100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.041 kcal (2) G-P(sol) polarization free energy of solvation -35.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds