Wall clock time and date at job start Sat Apr 11 2020 05:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00339 * 2 1 4 4 H 1.48494 * 109.47683 * 240.00448 * 3 2 1 5 5 H 1.48502 * 109.47301 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47115 * 119.99922 * 3 2 1 7 7 C 1.37877 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00248 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47380 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00010 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00289 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99745 * 180.02562 * 11 10 9 14 14 O 1.45205 * 109.47064 * 180.02562 * 13 11 10 15 15 C 1.34229 * 117.00171 * 180.02562 * 14 13 11 16 16 O 1.20823 * 119.99622 * 359.97438 * 15 14 13 17 17 C 1.50695 * 120.00041 * 179.97438 * 15 14 13 18 18 H 1.08998 * 110.85747 * 56.20993 * 17 15 14 19 19 C 1.54628 * 111.00319 * 292.39578 * 17 15 14 20 20 C 1.51287 * 104.25931 * 266.44512 * 19 17 15 21 21 O 1.21283 * 124.94488 * 164.00410 * 20 19 17 22 22 N 1.34419 * 110.11247 * 344.15087 * 20 19 17 23 23 C 1.46494 * 124.35081 * 179.43567 * 22 20 19 24 24 C 1.54961 * 110.76455 * 306.32717 * 23 22 20 25 25 C 1.54270 * 104.16191 * 156.22179 * 24 23 22 26 26 C 1.53869 * 106.63967 * 336.44607 * 25 24 23 27 27 C 1.54268 * 106.60115 * 359.97438 * 26 25 24 28 28 C 1.46766 * 111.30121 * 359.16163 * 22 20 19 29 29 H 0.97008 * 119.99684 * 359.97438 * 1 2 3 30 30 H 1.09010 * 109.47265 * 60.00286 * 9 7 2 31 31 H 1.08997 * 109.47409 * 300.00595 * 9 7 2 32 32 H 0.97001 * 119.99838 * 0.02562 * 10 9 7 33 33 H 1.08997 * 109.47411 * 60.00326 * 13 11 10 34 34 H 1.09000 * 109.46963 * 299.99660 * 13 11 10 35 35 H 1.08997 * 110.48840 * 25.34732 * 19 17 15 36 36 H 1.09004 * 110.48428 * 147.85815 * 19 17 15 37 37 H 1.09003 * 110.67701 * 182.92662 * 23 22 20 38 38 H 1.08997 * 110.47708 * 37.56776 * 24 23 22 39 39 H 1.09002 * 110.53308 * 274.90168 * 24 23 22 40 40 H 1.09002 * 110.03399 * 217.13605 * 25 24 23 41 41 H 1.08995 * 110.02943 * 95.75505 * 25 24 23 42 42 H 1.08999 * 110.03405 * 119.26051 * 26 25 24 43 43 H 1.09001 * 110.03705 * 240.64196 * 26 25 24 44 44 H 1.08997 * 110.48788 * 142.28685 * 27 26 25 45 45 H 1.09001 * 110.48482 * 264.93365 * 27 26 25 46 46 H 1.09005 * 110.24642 * 136.28449 * 28 22 20 47 47 H 1.08994 * 110.24849 * 258.28885 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7535 -4.8834 -0.0015 12 8 0.5611 -5.1049 -0.0006 13 6 2.7328 -6.0288 -0.0022 14 8 2.0067 -7.2863 -0.0023 15 6 2.7377 -8.4121 -0.0023 16 8 3.9443 -8.3489 -0.0028 17 6 2.0535 -9.7548 -0.0019 18 1 1.3723 -9.8435 -0.8481 19 6 1.3123 -9.9986 1.3331 20 6 2.3119 -10.7529 2.1820 21 8 2.2345 -10.8964 3.3838 22 7 3.3002 -11.2382 1.4108 23 6 4.4395 -12.0088 1.9149 24 6 5.1610 -11.2424 3.0522 25 6 5.8749 -12.3473 3.8581 26 6 5.1112 -13.6550 3.5852 27 6 3.9588 -13.2998 2.6231 28 6 3.0877 -10.9023 -0.0021 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8904 31 1 0.6245 -2.5570 0.8896 32 1 3.1565 -3.4355 -0.0021 33 1 3.3601 -5.9712 0.8874 34 1 3.3588 -5.9711 -0.8926 35 1 1.0482 -9.0505 1.8016 36 1 0.4205 -10.6036 1.1692 37 1 5.1313 -12.2464 1.1067 38 1 4.4379 -10.7201 3.6785 39 1 5.8869 -10.5414 2.6401 40 1 5.8445 -12.1123 4.9221 41 1 6.9087 -12.4426 3.5264 42 1 5.7742 -14.3846 3.1204 43 1 4.7108 -14.0550 4.5168 44 1 3.8074 -14.0991 1.8977 45 1 3.0413 -13.1102 3.1803 46 1 4.0214 -10.5686 -0.4550 47 1 2.6940 -11.7648 -0.5397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007331100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:05 Heat of formation + Delta-G solvation = -187.897397 kcal Electronic energy + Delta-G solvation = -29075.345170 eV Core-core repulsion = 24835.713453 eV Total energy + Delta-G solvation = -4239.631717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.34940 -41.25094 -40.33308 -38.46075 -37.89647 -37.06735 -36.19194 -34.42666 -33.38071 -30.87375 -29.66818 -28.99823 -28.67881 -28.21749 -25.17957 -24.30396 -22.81117 -21.67099 -21.52565 -21.22720 -20.05739 -19.32538 -18.98957 -18.10053 -18.04791 -17.75542 -17.34865 -16.98030 -16.72863 -16.39165 -16.14770 -15.95528 -15.77312 -15.21569 -14.77678 -14.71159 -14.57777 -14.50808 -14.11517 -14.07339 -13.89393 -13.83481 -13.51669 -13.06413 -12.96412 -12.81163 -12.69028 -12.63000 -12.38070 -12.24925 -12.13212 -12.06618 -11.93822 -11.93031 -11.62715 -11.52991 -11.29264 -10.92384 -10.81339 -10.69552 -9.94101 -9.69329 -8.30131 -6.46850 0.98385 1.17522 1.44031 1.47244 1.48823 1.54117 1.55719 1.95517 2.32558 2.53748 3.04977 3.15681 3.25116 3.51300 3.62604 3.65078 3.70620 3.75652 3.95536 4.02142 4.02885 4.28319 4.33513 4.45359 4.46331 4.53148 4.59295 4.63377 4.73225 4.76673 4.81032 4.87784 5.02778 5.05946 5.08521 5.15559 5.21185 5.23271 5.24368 5.40677 5.44604 5.61761 5.68597 5.81389 6.09349 6.50297 6.61851 6.76871 7.09163 7.19496 7.34477 8.81608 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.023007 B = 0.001891 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.710515 B =14803.972031 C =15234.321214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.700 5.700 11 C 0.499 3.501 12 O -0.582 6.582 13 C 0.061 3.939 14 O -0.343 6.343 15 C 0.465 3.535 16 O -0.519 6.519 17 C -0.087 4.087 18 H 0.180 0.820 19 C -0.144 4.144 20 C 0.504 3.496 21 O -0.568 6.568 22 N -0.609 5.609 23 C 0.151 3.849 24 C -0.143 4.143 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.132 4.132 28 C 0.114 3.886 29 H 0.269 0.731 30 H -0.006 1.006 31 H -0.009 1.009 32 H 0.412 0.588 33 H 0.116 0.884 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.154 0.846 37 H 0.124 0.876 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.050 0.950 46 H 0.098 0.902 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.358 -29.441 -1.502 31.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.597 4.597 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.351 5.351 11 C 0.285 3.715 12 O -0.462 6.462 13 C -0.016 4.016 14 O -0.258 6.258 15 C 0.309 3.691 16 O -0.407 6.407 17 C -0.106 4.106 18 H 0.197 0.803 19 C -0.184 4.184 20 C 0.293 3.707 21 O -0.448 6.448 22 N -0.341 5.341 23 C 0.048 3.952 24 C -0.181 4.181 25 C -0.157 4.157 26 C -0.156 4.156 27 C -0.171 4.171 28 C -0.007 4.007 29 H 0.078 0.922 30 H 0.012 0.988 31 H 0.009 0.991 32 H 0.248 0.752 33 H 0.134 0.866 34 H 0.146 0.854 35 H 0.113 0.887 36 H 0.171 0.829 37 H 0.142 0.858 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.116 0.884 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.758 -29.530 -0.871 31.796 hybrid contribution 0.330 1.569 0.381 1.648 sum 12.087 -27.960 -0.489 30.465 Atomic orbital electron populations 1.70125 1.08203 1.28686 1.49703 1.26047 0.95790 1.03852 0.93833 0.85206 0.77900 0.76645 0.79464 1.18588 1.21147 1.18827 1.21581 0.94412 0.90452 1.53223 0.89645 1.18622 0.88558 0.83764 0.94617 1.46056 1.11707 1.04816 1.72531 1.20695 0.89338 0.84698 0.76807 1.90688 1.18830 1.85282 1.51410 1.22718 0.92544 0.79378 1.06941 1.86550 1.41260 1.14454 1.83578 1.24123 0.86413 0.87053 0.71551 1.90670 1.16151 1.87934 1.45984 1.22188 0.99249 0.86483 1.02694 0.80281 1.22423 0.99512 1.03113 0.93343 1.21258 0.83261 0.79002 0.87171 1.90694 1.77390 1.61478 1.15247 1.48386 1.23237 1.53626 1.08875 1.22203 0.86145 0.90187 0.96619 1.22713 0.99160 0.98633 0.97638 1.22041 0.99824 0.94165 0.99629 1.22047 0.96798 0.97400 0.99309 1.22678 0.98728 0.96817 0.98838 1.22394 1.00046 0.96760 0.81531 0.92194 0.98777 0.99078 0.75180 0.86600 0.85398 0.88655 0.82865 0.85779 0.93438 0.91658 0.92592 0.89956 0.89463 0.92155 0.89387 0.93161 0.88373 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.98 41.71 29.54 68.60 2.03 43.74 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.56 -29.76 9.28 25.60 0.24 -29.52 16 8 H 0.09 4.07 7.60 -2.91 -0.02 4.05 16 9 C 0.27 14.30 5.43 85.63 0.46 14.76 16 10 N -0.70 -28.50 5.55 -466.79 -2.59 -31.09 16 11 C 0.50 19.50 7.91 87.66 0.69 20.19 16 12 O -0.58 -28.54 16.50 15.76 0.26 -28.28 16 13 C 0.06 1.67 5.94 71.24 0.42 2.09 16 14 O -0.34 -9.41 9.74 -45.05 -0.44 -9.85 16 15 C 0.47 9.95 7.20 71.23 0.51 10.47 16 16 O -0.52 -12.78 15.28 21.97 0.34 -12.45 16 17 C -0.09 -1.06 3.66 -10.48 -0.04 -1.10 16 18 H 0.18 0.82 8.14 -2.39 -0.02 0.80 16 19 C -0.14 -2.27 6.40 30.59 0.20 -2.08 16 20 C 0.50 11.11 7.24 87.90 0.64 11.75 16 21 O -0.57 -17.56 14.88 -3.04 -0.05 -17.61 16 22 N -0.61 -9.80 2.96 -786.73 -2.33 -12.13 16 23 C 0.15 2.23 3.58 46.31 0.17 2.39 16 24 C -0.14 -2.74 6.32 31.70 0.20 -2.54 16 25 C -0.12 -1.74 6.80 31.32 0.21 -1.53 16 26 C -0.12 -1.47 6.80 31.32 0.21 -1.25 16 27 C -0.13 -1.88 6.36 31.67 0.20 -1.68 16 28 C 0.11 1.06 6.65 86.83 0.58 1.64 16 29 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 30 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 31 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.41 13.50 8.32 -92.71 -0.77 12.73 16 33 H 0.12 2.77 8.13 -2.39 -0.02 2.75 16 34 H 0.13 2.78 8.13 -2.39 -0.02 2.76 16 35 H 0.09 1.96 7.89 -2.39 -0.02 1.94 16 36 H 0.15 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.12 1.17 8.11 -2.39 -0.02 1.15 16 38 H 0.05 1.27 6.17 -2.39 -0.01 1.26 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.05 1.04 6.62 -2.39 -0.02 1.03 16 46 H 0.10 1.01 7.02 -2.38 -0.02 1.00 16 47 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -82.47 389.93 2.89 -79.59 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.22 Total: 18.73 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: 5.16 Total: 24.32 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -4.63 Total: -98.18 kcal Atomic # 8 Polarization: -68.30 SS G_CDS: 0.11 Total: -68.19 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -82.47 2.89 -79.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007331100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.312 kcal (2) G-P(sol) polarization free energy of solvation -82.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds