Wall clock time and date at job start Sat Apr 11 2020 05:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00188 * 2 1 4 4 H 1.48499 * 109.46917 * 269.99624 * 3 2 1 5 5 H 1.48501 * 109.46928 * 29.99484 * 3 2 1 6 6 H 1.48497 * 109.47243 * 149.99553 * 3 2 1 7 7 C 1.37882 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00088 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99611 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47058 * 184.29281 * 9 7 2 11 11 C 1.46898 * 110.99917 * 299.44032 * 10 9 7 12 12 C 1.52998 * 109.47351 * 287.56539 * 11 10 9 13 13 N 1.46900 * 109.47553 * 181.57341 * 12 11 10 14 14 C 1.47012 * 110.99985 * 293.63939 * 13 12 11 15 15 C 1.53103 * 109.25599 * 177.60585 * 14 13 12 16 16 O 1.43019 * 109.25892 * 56.84530 * 15 14 13 17 17 C 1.43006 * 113.73814 * 301.32898 * 16 15 14 18 18 C 1.47015 * 110.99955 * 169.99803 * 13 12 11 19 19 C 1.46901 * 110.99989 * 63.39201 * 10 9 7 20 20 C 1.50699 * 109.46722 * 66.04926 * 19 10 9 21 21 C 1.38249 * 119.98296 * 270.24897 * 20 19 10 22 22 C 1.38217 * 120.00907 * 180.21344 * 21 20 19 23 23 C 1.38356 * 119.98926 * 359.51482 * 22 21 20 24 24 Cl 1.73597 * 120.01268 * 180.27519 * 23 22 21 25 25 C 1.38354 * 119.97187 * 0.25480 * 23 22 21 26 26 C 1.38223 * 119.98585 * 0.02562 * 25 23 22 27 27 H 0.97000 * 119.99455 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47005 * 64.29727 * 9 7 2 29 29 H 1.09000 * 109.47216 * 304.29490 * 9 7 2 30 30 H 1.08995 * 109.47299 * 47.56610 * 11 10 9 31 31 H 1.09004 * 109.47373 * 167.56731 * 11 10 9 32 32 H 1.09004 * 109.47378 * 301.57957 * 12 11 10 33 33 H 1.09005 * 109.47333 * 61.57437 * 12 11 10 34 34 H 1.08996 * 109.50424 * 297.53348 * 14 13 12 35 35 H 1.09000 * 109.51015 * 57.66856 * 14 13 12 36 36 H 1.09004 * 109.50274 * 296.91000 * 15 14 13 37 37 H 1.09004 * 109.54062 * 176.80405 * 15 14 13 38 38 H 1.09000 * 109.51181 * 298.73544 * 17 16 15 39 39 H 1.08999 * 109.54475 * 178.62501 * 17 16 15 40 40 H 1.09000 * 109.50682 * 302.32693 * 18 13 12 41 41 H 1.08996 * 109.50662 * 62.42119 * 18 13 12 42 42 H 1.08993 * 109.47092 * 306.04817 * 19 10 9 43 43 H 1.09000 * 109.46938 * 186.04669 * 19 10 9 44 44 H 1.08000 * 119.99457 * 0.02562 * 21 20 19 45 45 H 1.08004 * 120.00615 * 179.79332 * 22 21 20 46 46 H 1.07992 * 120.00606 * 180.02562 * 25 23 22 47 47 H 1.07998 * 119.99131 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2022 -3.6138 0.1048 11 6 3.1328 -3.6198 -1.0318 12 6 2.3945 -4.0731 -2.2930 13 7 3.3337 -4.1153 -3.4217 14 6 3.8047 -2.7659 -3.7660 15 6 4.8239 -2.8620 -4.9045 16 8 4.2242 -3.5271 -6.0195 17 6 3.7549 -4.8443 -5.7198 18 6 2.7248 -4.7684 -4.5896 19 6 2.9295 -3.5676 1.3803 20 6 1.9683 -3.8092 2.5156 21 6 1.3169 -2.7433 3.1080 22 6 0.4386 -2.9638 4.1521 23 6 0.2037 -4.2524 4.5978 24 17 -0.9048 -4.5307 5.9045 25 6 0.8523 -5.3191 4.0014 26 6 1.7348 -5.0968 2.9611 27 1 -0.4849 0.8401 -0.0004 28 1 0.6837 -2.5912 -0.9257 29 1 0.5676 -2.5241 0.8493 30 1 3.5278 -2.6154 -1.1833 31 1 3.9542 -4.3060 -0.8253 32 1 1.9755 -5.0663 -2.1316 33 1 1.5906 -3.3714 -2.5154 34 1 2.9596 -2.1558 -4.0847 35 1 4.2747 -2.3109 -2.8941 36 1 5.6931 -3.4270 -4.5680 37 1 5.1338 -1.8601 -5.2019 38 1 4.5930 -5.4670 -5.4071 39 1 3.2911 -5.2767 -6.6064 40 1 2.4066 -5.7752 -4.3189 41 1 1.8620 -4.1907 -4.9210 42 1 3.3932 -2.5884 1.4989 43 1 3.7006 -4.3380 1.3870 44 1 1.4967 -1.7380 2.7568 45 1 -0.0678 -2.1308 4.6171 46 1 0.6690 -6.3251 4.3486 47 1 2.2409 -5.9294 2.4952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078681279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:22 Heat of formation + Delta-G solvation = -33.226232 kcal Electronic energy + Delta-G solvation = -27433.654851 eV Core-core repulsion = 23641.439344 eV Total energy + Delta-G solvation = -3792.215508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67024 -40.34119 -38.55669 -37.35085 -36.49362 -34.56932 -32.62254 -32.11264 -31.92431 -30.42158 -28.90419 -27.16119 -25.95790 -24.96931 -24.12499 -23.61303 -22.13298 -21.37440 -21.10721 -18.55897 -17.85071 -17.64778 -17.17002 -16.88755 -16.44423 -16.32325 -16.22068 -16.08417 -15.94854 -15.55828 -15.32947 -14.75480 -14.55665 -14.39529 -14.26123 -14.07985 -13.96408 -13.43358 -13.10865 -13.04322 -12.88305 -12.77413 -12.49364 -12.37192 -12.33324 -12.27785 -12.15566 -11.88858 -11.81123 -11.70975 -11.65084 -11.62152 -11.35787 -10.65475 -10.57535 -9.85699 -9.49348 -9.43714 -8.94474 -8.12493 -6.29896 0.25938 0.46145 1.19530 1.32970 1.36061 1.43495 2.35921 2.59741 2.81782 2.98080 3.13168 3.62540 3.91059 3.93605 4.03170 4.05782 4.06771 4.09894 4.20600 4.21959 4.38841 4.41645 4.52335 4.53908 4.58614 4.71010 4.72732 4.79003 4.81222 4.85948 4.90397 4.97785 4.98980 5.07942 5.14853 5.18570 5.28137 5.34576 5.41584 5.42848 5.78007 5.79370 5.92129 5.97090 5.99360 6.09312 6.18621 6.28544 6.55214 6.91057 7.40259 8.88890 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010840 B = 0.003229 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.348321 B = 8670.657844 C =10631.004229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.020 3.980 3 Si 0.939 3.061 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.057 0.943 9 C 0.202 3.798 10 N -0.533 5.533 11 C 0.072 3.928 12 C 0.077 3.923 13 N -0.531 5.531 14 C 0.016 3.984 15 C 0.070 3.930 16 O -0.407 6.407 17 C 0.066 3.934 18 C 0.015 3.985 19 C 0.100 3.900 20 C -0.068 4.068 21 C -0.097 4.097 22 C -0.126 4.126 23 C -0.045 4.045 24 Cl -0.075 7.075 25 C -0.114 4.114 26 C -0.088 4.088 27 H 0.261 0.739 28 H -0.007 1.007 29 H 0.019 0.981 30 H 0.028 0.972 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.004 0.996 34 H 0.016 0.984 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.023 0.977 42 H 0.033 0.967 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.128 0.872 46 H 0.156 0.844 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.282 -12.155 -0.162 14.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.179 4.179 3 Si 0.765 3.235 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.075 0.925 9 C 0.075 3.925 10 N -0.256 5.256 11 C -0.057 4.057 12 C -0.051 4.051 13 N -0.256 5.256 14 C -0.113 4.113 15 C -0.006 4.006 16 O -0.325 6.325 17 C -0.010 4.010 18 C -0.113 4.113 19 C -0.027 4.027 20 C -0.069 4.069 21 C -0.116 4.116 22 C -0.144 4.144 23 C -0.071 4.071 24 Cl -0.046 7.046 25 C -0.133 4.133 26 C -0.107 4.107 27 H 0.070 0.930 28 H 0.011 0.989 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.023 0.977 34 H 0.034 0.966 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.135 0.865 40 H 0.121 0.879 41 H 0.041 0.959 42 H 0.051 0.949 43 H 0.114 0.886 44 H 0.128 0.872 45 H 0.146 0.854 46 H 0.173 0.827 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.162 -12.707 -0.107 14.587 hybrid contribution -0.710 2.850 0.184 2.943 sum 6.452 -9.857 0.077 11.781 Atomic orbital electron populations 1.70063 1.07376 1.27381 1.51379 1.25615 0.95287 1.02024 0.95017 0.85846 0.79123 0.80387 0.78153 1.20479 1.21206 1.18931 1.21849 0.93110 0.92600 1.50343 0.92520 1.19430 0.91482 0.86340 0.95246 1.62388 1.17380 1.44729 1.01133 1.21846 0.94427 0.99490 0.89912 1.21851 0.92580 1.00539 0.90139 1.62252 1.38467 1.18534 1.06335 1.22815 0.98492 0.90085 0.99881 1.22716 0.94203 0.98702 0.85024 1.87935 1.78808 1.30208 1.35598 1.22810 0.96575 0.83889 0.97773 1.22887 0.96520 1.00615 0.91297 1.20929 0.93924 1.00564 0.87279 1.19982 0.97597 0.93461 0.95848 1.21147 0.95977 0.99731 0.94778 1.21065 0.99445 0.96040 0.97879 1.20971 0.97112 0.94952 0.94092 1.98335 1.61861 1.96577 1.47807 1.21246 0.96708 0.98760 0.96550 1.21207 0.97564 0.96393 0.95534 0.92975 0.98938 0.96283 0.95387 0.89892 0.89838 0.97732 0.96590 0.89770 0.90948 0.87449 0.91097 0.86458 0.87882 0.95852 0.94915 0.88618 0.87223 0.85429 0.82663 0.82721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.27 13.29 21.45 0.28 -52.99 16 2 C 0.02 1.09 5.46 84.66 0.46 1.55 16 3 Si 0.94 42.58 29.54 68.60 2.03 44.60 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.54 -27.76 7.14 25.60 0.18 -27.57 16 8 H 0.06 2.87 5.95 -2.91 -0.02 2.85 16 9 C 0.20 9.87 4.61 85.56 0.39 10.27 16 10 N -0.53 -20.65 4.65 -905.37 -4.21 -24.86 16 11 C 0.07 2.50 4.70 86.30 0.41 2.91 16 12 C 0.08 2.60 4.98 86.30 0.43 3.02 16 13 N -0.53 -15.32 4.73 -895.19 -4.23 -19.55 16 14 C 0.02 0.47 5.44 86.32 0.47 0.94 16 15 C 0.07 1.69 7.01 72.02 0.50 2.20 16 16 O -0.41 -10.52 10.83 -148.98 -1.61 -12.13 16 17 C 0.07 1.36 7.01 72.02 0.50 1.86 16 18 C 0.01 0.37 5.65 86.32 0.49 0.85 16 19 C 0.10 3.46 4.94 85.56 0.42 3.88 16 20 C -0.07 -2.30 4.90 -19.86 -0.10 -2.40 16 21 C -0.10 -3.66 7.90 22.27 0.18 -3.48 16 22 C -0.13 -4.22 9.83 22.29 0.22 -4.00 16 23 C -0.04 -1.31 6.32 22.33 0.14 -1.17 16 24 Cl -0.07 -1.92 28.96 -2.72 -0.08 -2.00 16 25 C -0.11 -2.96 9.83 22.29 0.22 -2.74 16 26 C -0.09 -2.42 9.70 22.27 0.22 -2.20 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H -0.01 -0.41 6.74 -2.38 -0.02 -0.43 16 29 H 0.02 1.03 5.91 -2.39 -0.01 1.01 16 30 H 0.03 1.11 4.57 -2.39 -0.01 1.10 16 31 H 0.08 2.51 7.80 -2.38 -0.02 2.49 16 32 H 0.08 2.63 8.04 -2.39 -0.02 2.61 16 33 H 0.00 0.18 6.81 -2.38 -0.02 0.16 16 34 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 2.62 6.42 -2.39 -0.02 2.61 16 36 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.10 2.11 8.09 -2.39 -0.02 2.09 16 41 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.03 1.27 6.56 -2.39 -0.02 1.26 16 43 H 0.10 2.66 7.80 -2.39 -0.02 2.64 16 44 H 0.11 4.80 7.77 -2.91 -0.02 4.78 16 45 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 46 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 47 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -60.83 382.48 -1.73 -62.56 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.96 Total: 20.44 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 5.14 Total: -16.08 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -8.16 Total: -97.40 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -1.61 Total: -12.13 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.08 Total: -2.00 kcal Total: -60.83 -1.73 -62.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078681279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.337 kcal (2) G-P(sol) polarization free energy of solvation -60.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds