Wall clock time and date at job start Sat Apr 11 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 O 1.42099 * 109.46694 * 2 1 4 4 C 1.81394 * 103.00116 * 243.60792 * 2 1 3 5 5 C 1.52997 * 109.47383 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47535 * 179.97438 * 5 4 2 7 7 N 1.46494 * 109.47001 * 180.02562 * 6 5 4 8 8 C 1.34784 * 119.99635 * 180.02562 * 7 6 5 9 9 O 1.21579 * 120.00114 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99908 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00258 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46776 * 35.00022 * 11 10 8 13 13 C 1.52998 * 109.47246 * 155.00083 * 11 10 8 14 14 C 1.50697 * 109.47439 * 295.00322 * 13 11 10 15 15 H 1.08007 * 119.99628 * 359.97438 * 14 13 11 16 16 C 1.37875 * 120.00471 * 180.02562 * 14 13 11 17 17 N 1.31519 * 119.99612 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00481 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47274 * 89.99797 * 18 16 14 20 20 H 1.48496 * 109.47331 * 209.99853 * 18 16 14 21 21 H 1.48501 * 109.46858 * 329.99902 * 18 16 14 22 22 C 1.50696 * 109.47365 * 275.00798 * 11 10 8 23 23 C 1.38236 * 119.99802 * 319.72135 * 22 11 10 24 24 C 1.38242 * 120.00141 * 179.79215 * 23 22 11 25 25 C 1.38232 * 119.99627 * 0.44159 * 24 23 22 26 26 C 1.38232 * 119.99889 * 359.81024 * 25 24 23 27 27 C 1.38225 * 120.00662 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46936 * 176.38581 * 1 2 3 29 29 H 1.09000 * 109.47034 * 296.38991 * 1 2 3 30 30 H 1.08998 * 109.47010 * 56.39227 * 1 2 3 31 31 H 1.09005 * 109.46957 * 60.00071 * 4 2 1 32 32 H 1.09004 * 109.47580 * 300.00225 * 4 2 1 33 33 H 1.09005 * 109.46889 * 60.00185 * 5 4 2 34 34 H 1.08996 * 109.47223 * 300.00964 * 5 4 2 35 35 H 1.09005 * 109.46767 * 60.00250 * 6 5 4 36 36 H 1.09002 * 109.47113 * 300.00590 * 6 5 4 37 37 H 0.96995 * 120.00292 * 0.27801 * 7 6 5 38 38 H 0.96999 * 120.00047 * 0.02562 * 10 8 7 39 39 H 1.08998 * 109.47261 * 55.00563 * 13 11 10 40 40 H 1.09000 * 109.47285 * 175.00317 * 13 11 10 41 41 H 0.96995 * 119.99952 * 180.02562 * 17 16 14 42 42 H 1.08001 * 120.00085 * 359.97438 * 23 22 11 43 43 H 1.07997 * 119.99779 * 180.27319 * 24 23 22 44 44 H 1.07996 * 119.99638 * 179.83667 * 25 24 23 45 45 H 1.08007 * 119.99514 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.00946 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2222 -0.7856 -1.5832 5 6 3.7424 -0.8617 -1.7380 6 6 4.0866 -1.5250 -3.0731 7 7 5.5423 -1.5983 -3.2209 8 6 6.0803 -2.1477 -4.3279 9 8 5.3577 -2.5818 -5.2039 10 7 7.4195 -2.2147 -4.4642 11 6 8.0044 -2.8122 -5.6671 12 1 7.3774 -2.5825 -6.5286 13 6 9.4064 -2.2416 -5.8900 14 6 9.3076 -0.7671 -6.1850 15 1 8.3413 -0.2852 -6.2113 16 6 10.4505 -0.0333 -6.4223 17 7 11.6270 -0.6202 -6.3908 18 14 10.3280 1.7946 -6.7872 19 1 10.3998 2.5590 -5.5161 20 1 11.4499 2.1989 -7.6720 21 1 9.0369 2.0788 -7.4636 22 6 8.0920 -4.3067 -5.4940 23 6 8.4710 -4.8404 -4.2764 24 6 8.5472 -6.2114 -4.1163 25 6 8.2531 -7.0484 -5.1764 26 6 7.8791 -6.5145 -6.3954 27 6 7.7986 -5.1438 -6.5543 28 1 -0.3633 -1.0256 -0.0648 29 1 -0.3633 0.4568 0.9206 30 1 -0.3633 0.5688 -0.8559 31 1 1.8032 -0.1971 -2.3995 32 1 1.8032 -1.7917 -1.6084 33 1 4.1617 -1.4500 -0.9217 34 1 4.1610 0.1443 -1.7130 35 1 3.6673 -0.9371 -3.8896 36 1 3.6681 -2.5311 -3.0976 37 1 6.1188 -1.2549 -2.5206 38 1 7.9961 -1.8680 -3.7655 39 1 10.0072 -2.3932 -4.9933 40 1 9.8759 -2.7499 -6.7322 41 1 12.4311 -0.1040 -6.5574 42 1 8.7048 -4.1863 -3.4494 43 1 8.8390 -6.6284 -3.1638 44 1 8.3152 -8.1193 -5.0521 45 1 7.6490 -7.1685 -7.2235 46 1 7.5069 -4.7266 -7.5068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132929637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:51 Heat of formation + Delta-G solvation = -55.764508 kcal Electronic energy + Delta-G solvation = -26276.438613 eV Core-core repulsion = 22485.289479 eV Total energy + Delta-G solvation = -3791.149134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.76682 -38.59753 -36.10658 -35.95312 -34.90574 -32.87728 -32.49698 -30.80059 -30.38807 -29.36673 -28.74554 -26.34206 -24.68398 -22.27087 -22.03676 -21.88251 -20.74794 -19.74080 -17.88283 -17.81276 -16.84935 -16.20545 -16.09751 -16.05512 -15.36729 -15.08130 -14.97742 -14.61598 -14.54149 -14.40671 -14.01974 -13.78345 -13.43108 -13.15695 -13.08921 -12.92924 -12.61792 -12.53657 -12.44137 -12.21430 -12.08165 -11.78845 -11.50049 -11.20918 -11.11597 -10.88911 -10.70731 -10.58178 -10.46083 -10.42083 -9.74863 -9.66498 -9.26945 -8.88793 -8.61625 -8.50298 -8.43748 -8.25917 -8.13635 -6.07327 -4.10279 1.13900 1.81908 1.84266 2.24664 3.14680 3.28455 3.35835 3.40512 3.45512 3.74171 4.24188 4.41663 4.52329 4.58111 4.71178 4.78754 4.83077 4.92386 5.20949 5.29418 5.29774 5.31144 5.36928 5.41231 5.49805 5.55011 5.58733 5.88278 5.92796 5.95005 5.98223 6.19800 6.39825 6.46604 6.62125 6.74037 6.88050 6.89164 7.00221 7.14860 7.35569 7.44655 7.54163 7.70929 7.90096 8.28428 8.55740 8.95832 9.13647 9.54663 11.03224 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008060 B = 0.002876 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3473.056225 B = 9732.561983 C =12578.606938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.492 4.492 2 S 1.246 4.754 3 O -0.851 6.851 4 C -0.445 4.445 5 C -0.113 4.113 6 C 0.147 3.853 7 N -0.755 5.755 8 C 0.703 3.297 9 O -0.599 6.599 10 N -0.716 5.716 11 C 0.202 3.798 12 H 0.086 0.914 13 C 0.024 3.976 14 C -0.518 4.518 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.070 4.070 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.108 4.108 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.395 0.605 38 H 0.397 0.603 39 H 0.024 0.976 40 H 0.035 0.965 41 H 0.261 0.739 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.700 -8.527 14.768 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 1.444 4.556 3 O -0.846 6.846 4 C -0.582 4.582 5 C -0.151 4.151 6 C 0.021 3.979 7 N -0.412 5.412 8 C 0.403 3.597 9 O -0.478 6.478 10 N -0.369 5.369 11 C 0.097 3.903 12 H 0.104 0.896 13 C -0.014 4.014 14 C -0.556 4.556 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.072 4.072 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.142 4.142 27 C -0.126 4.126 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.228 0.772 38 H 0.230 0.770 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.579 -8.504 14.596 23.669 hybrid contribution -0.354 2.483 -1.396 2.870 sum -16.933 -6.021 13.200 22.298 Atomic orbital electron populations 1.27656 1.21978 1.08031 1.07235 1.70499 0.86269 0.99104 0.99763 1.93158 1.73273 1.36706 1.81479 1.27604 1.01989 1.10519 1.18109 1.21360 0.92898 1.02403 0.98485 1.21048 0.80030 1.00637 0.96149 1.45077 1.07212 1.67135 1.21740 1.15990 0.82899 0.78711 0.82095 1.90868 1.60415 1.54586 1.41895 1.45129 1.03993 1.64245 1.23485 1.20105 0.98251 0.85594 0.86347 0.89634 1.19396 0.87886 0.95912 0.98171 1.21142 0.92878 0.93345 1.48272 0.92409 1.24983 0.95412 0.98420 0.95352 1.69958 0.97618 1.36027 1.49547 0.86601 0.77717 0.85482 0.78264 1.20710 1.21230 1.19904 1.20615 0.95960 0.97098 0.93498 1.20892 0.99566 0.94657 0.97348 1.21033 1.01122 0.93732 0.98528 1.20979 1.01700 0.99058 0.93676 1.21033 1.00746 0.95097 0.97284 1.21020 0.99596 0.93159 0.98868 0.86905 0.87689 0.90168 0.89316 0.86083 0.89983 0.90691 0.92101 0.91655 0.77195 0.76953 0.95752 0.94696 0.92899 0.86630 0.86805 0.86907 0.86669 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -2.17 10.74 101.05 1.09 -1.09 16 2 S 1.25 6.74 13.80 -107.50 -1.48 5.26 16 3 O -0.85 -11.20 18.14 -35.23 -0.64 -11.83 16 4 C -0.44 -2.72 5.92 37.16 0.22 -2.50 16 5 C -0.11 -0.91 5.34 -26.73 -0.14 -1.05 16 6 C 0.15 1.71 5.67 -4.04 -0.02 1.69 16 7 N -0.75 -10.28 5.56 -65.23 -0.36 -10.64 16 8 C 0.70 12.86 8.52 -86.91 -0.74 12.12 16 9 O -0.60 -13.21 16.00 5.30 0.08 -13.12 16 10 N -0.72 -13.10 4.05 -59.82 -0.24 -13.34 16 11 C 0.20 4.18 2.11 -69.09 -0.15 4.04 16 12 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 13 C 0.02 0.57 4.49 -27.89 -0.13 0.45 16 14 C -0.52 -13.88 8.84 -34.44 -0.30 -14.18 16 15 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.07 -1.32 4.91 -104.62 -0.51 -1.84 16 23 C -0.11 -1.79 9.32 -39.58 -0.37 -2.16 16 24 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 25 C -0.14 -1.94 10.05 -39.59 -0.40 -2.34 16 26 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 27 C -0.11 -1.91 9.67 -39.59 -0.38 -2.29 16 28 H 0.11 0.20 8.14 -51.92 -0.42 -0.22 16 29 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.69 8.14 -51.92 -0.42 0.26 16 32 H 0.12 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.39 4.30 8.49 -40.82 -0.35 3.96 16 38 H 0.40 6.57 8.62 -40.82 -0.35 6.22 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.12 1.81 7.73 -52.49 -0.41 1.41 16 43 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 45 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 46 H 0.12 2.05 8.04 -52.49 -0.42 1.62 16 LS Contribution 402.92 15.07 6.07 6.07 Total: -1.00 -38.84 402.92 -10.96 -49.80 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.37 Total: 8.59 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -2.73 Total: -12.15 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.13 Total: -49.00 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.55 Total: -24.96 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 6.74 SS G_CDS: -1.48 Total: 5.26 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -38.84 -10.96 -49.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132929637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.963 kcal (2) G-P(sol) polarization free energy of solvation -38.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds