Wall clock time and date at job start Sat Apr 11 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 O 1.42099 * 109.46694 * 2 1 4 4 C 1.81394 * 103.00116 * 243.60792 * 2 1 3 5 5 C 1.52997 * 109.47383 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47535 * 179.97438 * 5 4 2 7 7 N 1.46494 * 109.47001 * 180.02562 * 6 5 4 8 8 C 1.34784 * 119.99635 * 180.02562 * 7 6 5 9 9 O 1.21579 * 120.00114 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99908 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00258 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46776 * 35.00022 * 11 10 8 13 13 C 1.52998 * 109.47246 * 155.00083 * 11 10 8 14 14 C 1.50697 * 109.47439 * 295.00322 * 13 11 10 15 15 H 1.08007 * 119.99628 * 359.97438 * 14 13 11 16 16 C 1.37875 * 120.00471 * 180.02562 * 14 13 11 17 17 N 1.31519 * 119.99612 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00481 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47274 * 89.99797 * 18 16 14 20 20 H 1.48496 * 109.47331 * 209.99853 * 18 16 14 21 21 H 1.48501 * 109.46858 * 329.99902 * 18 16 14 22 22 C 1.50696 * 109.47365 * 275.00798 * 11 10 8 23 23 C 1.38236 * 119.99802 * 319.72135 * 22 11 10 24 24 C 1.38242 * 120.00141 * 179.79215 * 23 22 11 25 25 C 1.38232 * 119.99627 * 0.44159 * 24 23 22 26 26 C 1.38232 * 119.99889 * 359.81024 * 25 24 23 27 27 C 1.38225 * 120.00662 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46936 * 176.38581 * 1 2 3 29 29 H 1.09000 * 109.47034 * 296.38991 * 1 2 3 30 30 H 1.08998 * 109.47010 * 56.39227 * 1 2 3 31 31 H 1.09005 * 109.46957 * 60.00071 * 4 2 1 32 32 H 1.09004 * 109.47580 * 300.00225 * 4 2 1 33 33 H 1.09005 * 109.46889 * 60.00185 * 5 4 2 34 34 H 1.08996 * 109.47223 * 300.00964 * 5 4 2 35 35 H 1.09005 * 109.46767 * 60.00250 * 6 5 4 36 36 H 1.09002 * 109.47113 * 300.00590 * 6 5 4 37 37 H 0.96995 * 120.00292 * 0.27801 * 7 6 5 38 38 H 0.96999 * 120.00047 * 0.02562 * 10 8 7 39 39 H 1.08998 * 109.47261 * 55.00563 * 13 11 10 40 40 H 1.09000 * 109.47285 * 175.00317 * 13 11 10 41 41 H 0.96995 * 119.99952 * 180.02562 * 17 16 14 42 42 H 1.08001 * 120.00085 * 359.97438 * 23 22 11 43 43 H 1.07997 * 119.99779 * 180.27319 * 24 23 22 44 44 H 1.07996 * 119.99638 * 179.83667 * 25 24 23 45 45 H 1.08007 * 119.99514 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.00946 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2222 -0.7856 -1.5832 5 6 3.7424 -0.8617 -1.7380 6 6 4.0866 -1.5250 -3.0731 7 7 5.5423 -1.5983 -3.2209 8 6 6.0803 -2.1477 -4.3279 9 8 5.3577 -2.5818 -5.2039 10 7 7.4195 -2.2147 -4.4642 11 6 8.0044 -2.8122 -5.6671 12 1 7.3774 -2.5825 -6.5286 13 6 9.4064 -2.2416 -5.8900 14 6 9.3076 -0.7671 -6.1850 15 1 8.3413 -0.2852 -6.2113 16 6 10.4505 -0.0333 -6.4223 17 7 11.6270 -0.6202 -6.3908 18 14 10.3280 1.7946 -6.7872 19 1 10.3998 2.5590 -5.5161 20 1 11.4499 2.1989 -7.6720 21 1 9.0369 2.0788 -7.4636 22 6 8.0920 -4.3067 -5.4940 23 6 8.4710 -4.8404 -4.2764 24 6 8.5472 -6.2114 -4.1163 25 6 8.2531 -7.0484 -5.1764 26 6 7.8791 -6.5145 -6.3954 27 6 7.7986 -5.1438 -6.5543 28 1 -0.3633 -1.0256 -0.0648 29 1 -0.3633 0.4568 0.9206 30 1 -0.3633 0.5688 -0.8559 31 1 1.8032 -0.1971 -2.3995 32 1 1.8032 -1.7917 -1.6084 33 1 4.1617 -1.4500 -0.9217 34 1 4.1610 0.1443 -1.7130 35 1 3.6673 -0.9371 -3.8896 36 1 3.6681 -2.5311 -3.0976 37 1 6.1188 -1.2549 -2.5206 38 1 7.9961 -1.8680 -3.7655 39 1 10.0072 -2.3932 -4.9933 40 1 9.8759 -2.7499 -6.7322 41 1 12.4311 -0.1040 -6.5574 42 1 8.7048 -4.1863 -3.4494 43 1 8.8390 -6.6284 -3.1638 44 1 8.3152 -8.1193 -5.0521 45 1 7.6490 -7.1685 -7.2235 46 1 7.5069 -4.7266 -7.5068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132929637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:50 Heat of formation + Delta-G solvation = -84.118132 kcal Electronic energy + Delta-G solvation = -26277.668119 eV Core-core repulsion = 22485.289479 eV Total energy + Delta-G solvation = -3792.378640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21141 -39.88542 -37.25306 -36.79103 -36.37254 -34.74084 -33.74936 -32.09518 -31.62821 -30.50786 -29.75487 -27.44215 -26.31974 -23.77808 -23.36870 -22.78679 -22.15761 -21.22731 -19.27693 -18.62057 -18.37885 -17.73350 -17.30635 -16.90578 -16.54291 -16.35449 -16.18870 -15.77508 -15.71805 -15.47039 -15.10482 -14.89330 -14.74443 -14.45370 -14.15302 -14.11707 -13.68508 -13.64710 -13.57812 -13.41894 -13.16000 -12.94579 -12.92476 -12.63947 -12.50512 -12.46485 -12.13355 -11.89474 -11.84027 -11.57879 -11.34305 -11.31638 -11.06660 -10.59702 -10.27329 -9.73919 -9.67100 -9.47630 -9.17416 -8.21700 -6.31150 0.54612 0.59873 0.66509 1.36373 1.38382 1.48570 1.80461 1.87080 2.26969 2.38023 2.91722 2.99462 3.11704 3.45561 3.94484 4.00970 4.02850 4.06816 4.07249 4.24737 4.30803 4.35798 4.46290 4.47785 4.55567 4.65911 4.68438 4.78828 4.81961 4.88157 5.08698 5.16075 5.16741 5.18645 5.23820 5.30821 5.43572 5.57201 5.64531 5.65756 5.67830 5.78165 5.91563 6.14735 6.18463 6.23608 6.81281 7.20613 7.37708 7.69651 8.88956 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008060 B = 0.002876 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3473.056225 B = 9732.561983 C =12578.606938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.489 4.489 2 S 1.303 4.697 3 O -0.932 6.932 4 C -0.445 4.445 5 C -0.108 4.108 6 C 0.145 3.855 7 N -0.738 5.738 8 C 0.700 3.300 9 O -0.640 6.640 10 N -0.712 5.712 11 C 0.219 3.781 12 H 0.052 0.948 13 C 0.038 3.962 14 C -0.528 4.528 15 H 0.049 0.951 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.954 3.046 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.276 1.276 22 C -0.098 4.098 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.129 4.129 26 C -0.125 4.125 27 C -0.134 4.134 28 H 0.148 0.852 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.117 0.883 34 H 0.055 0.945 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.405 0.595 39 H 0.015 0.985 40 H 0.005 0.995 41 H 0.264 0.736 42 H 0.121 0.879 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.143 0.857 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.790 -10.385 16.886 26.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 1.504 4.496 3 O -0.928 6.928 4 C -0.583 4.583 5 C -0.147 4.147 6 C 0.020 3.980 7 N -0.395 5.395 8 C 0.399 3.601 9 O -0.522 6.522 10 N -0.365 5.365 11 C 0.113 3.887 12 H 0.070 0.930 13 C 0.001 3.999 14 C -0.566 4.566 15 H 0.067 0.933 16 C -0.186 4.186 17 N -0.564 5.564 18 Si 0.780 3.220 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.201 1.201 22 C -0.100 4.100 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.142 4.142 27 C -0.153 4.153 28 H 0.167 0.833 29 H 0.130 0.870 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.176 0.824 33 H 0.136 0.864 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.246 0.754 38 H 0.240 0.760 39 H 0.033 0.967 40 H 0.023 0.977 41 H 0.073 0.927 42 H 0.139 0.861 43 H 0.166 0.834 44 H 0.170 0.830 45 H 0.160 0.840 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.657 -10.334 16.768 26.452 hybrid contribution -0.111 2.937 -2.068 3.593 sum -17.768 -7.397 14.700 24.218 Atomic orbital electron populations 1.27639 1.20074 1.10213 1.06868 1.69583 0.86243 0.95823 0.97982 1.93020 1.76126 1.40636 1.83046 1.27647 1.00679 1.12401 1.17550 1.21351 0.94436 1.01447 0.97445 1.21215 0.78409 1.00980 0.97424 1.44996 1.08430 1.65542 1.20544 1.16146 0.82424 0.78744 0.82747 1.90833 1.61184 1.56458 1.43691 1.44925 1.04388 1.64335 1.22878 1.19551 0.95292 0.87572 0.86293 0.92955 1.19132 0.89820 0.94615 0.96330 1.21378 0.92506 0.94684 1.48027 0.93260 1.25732 0.95090 1.02610 0.95195 1.70059 0.98238 1.37647 1.50447 0.85616 0.77464 0.80525 0.78406 1.19555 1.20713 1.20135 1.20482 0.98682 0.95628 0.95170 1.21058 0.99822 0.96190 0.96609 1.21446 0.99770 0.92690 1.00249 1.21467 0.99513 1.01040 0.92672 1.21374 0.99860 0.94078 0.98937 1.21164 1.00967 0.94751 0.98425 0.83344 0.87034 0.91803 0.91170 0.82432 0.86436 0.92654 0.94594 0.90978 0.75407 0.75992 0.96713 0.97659 0.92678 0.86064 0.83415 0.83048 0.83952 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.14 10.74 113.37 1.22 -1.92 16 2 S 1.30 12.13 13.80 -56.49 -0.78 11.35 16 3 O -0.93 -24.81 18.14 -148.98 -2.70 -27.51 16 4 C -0.45 -4.62 5.92 71.98 0.43 -4.20 16 5 C -0.11 -1.59 5.34 30.59 0.16 -1.42 16 6 C 0.14 3.29 5.67 86.38 0.49 3.78 16 7 N -0.74 -19.89 5.56 -478.53 -2.66 -22.55 16 8 C 0.70 26.19 8.52 179.05 1.53 27.72 16 9 O -0.64 -29.25 16.00 -3.96 -0.06 -29.31 16 10 N -0.71 -26.93 4.05 -461.43 -1.87 -28.80 16 11 C 0.22 9.58 2.11 44.24 0.09 9.68 16 12 H 0.05 2.60 7.44 -2.39 -0.02 2.58 16 13 C 0.04 1.96 4.49 29.85 0.13 2.09 16 14 C -0.53 -29.27 8.84 25.60 0.23 -29.04 16 15 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 16 C 0.01 0.70 5.46 84.65 0.46 1.16 16 17 N -0.92 -54.36 13.29 21.45 0.28 -54.07 16 18 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 C -0.10 -3.82 4.91 -19.87 -0.10 -3.91 16 23 C -0.12 -3.93 9.32 22.27 0.21 -3.72 16 24 C -0.12 -3.33 10.05 22.27 0.22 -3.10 16 25 C -0.13 -3.27 10.05 22.27 0.22 -3.04 16 26 C -0.12 -3.61 10.05 22.27 0.22 -3.38 16 27 C -0.13 -4.90 9.67 22.27 0.22 -4.68 16 28 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.41 8.55 8.49 -92.71 -0.79 7.76 16 38 H 0.40 13.70 8.62 -92.71 -0.80 12.90 16 39 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.26 14.70 8.31 -92.71 -0.77 13.92 16 42 H 0.12 3.74 7.73 -2.91 -0.02 3.72 16 43 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 44 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 45 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 46 H 0.11 4.03 8.04 -2.91 -0.02 4.01 16 Total: -1.00 -88.84 402.92 -0.63 -89.47 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -0.61 Total: 28.87 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 5.74 Total: -13.99 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -4.24 Total: -105.42 kcal Atomic # 8 Polarization: -54.06 SS G_CDS: -2.77 Total: -56.83 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 12.13 SS G_CDS: -0.78 Total: 11.35 kcal Total: -88.84 -0.63 -89.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132929637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.354 kcal (2) G-P(sol) polarization free energy of solvation -88.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds