Wall clock time and date at job start Sat Apr 11 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42093 * 110.54458 * 2 1 4 4 O 1.42100 * 110.54427 * 223.24068 * 2 1 3 5 5 N 1.65605 * 104.44767 * 111.62315 * 2 1 3 6 6 C 1.39669 * 120.00319 * 59.95962 * 5 2 1 7 7 C 1.38759 * 119.90392 * 35.49952 * 6 5 2 8 8 C 1.38085 * 119.74402 * 180.02562 * 7 6 5 9 9 C 1.38104 * 119.95135 * 0.08096 * 8 7 6 10 10 C 1.38747 * 120.53607 * 359.97438 * 9 8 7 11 11 C 1.37740 * 119.77591 * 359.86061 * 10 9 8 12 12 C 1.50713 * 121.70277 * 180.22379 * 11 10 9 13 13 C 1.52897 * 109.88153 * 343.32136 * 12 11 10 14 14 N 1.46956 * 108.61868 * 50.32793 * 13 12 11 15 15 C 1.46899 * 111.02531 * 52.07482 * 14 13 12 16 16 C 1.52995 * 109.47127 * 171.03781 * 15 14 13 17 17 C 1.52998 * 109.47104 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47448 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99641 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00470 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00145 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00202 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47038 * 60.00204 * 22 20 18 24 24 H 1.48501 * 109.47352 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47527 * 300.00114 * 22 20 18 26 26 C 1.46630 * 110.18172 * 288.68276 * 14 13 12 27 27 H 1.09004 * 109.46733 * 308.37995 * 1 2 3 28 28 H 1.08994 * 109.46837 * 68.37811 * 1 2 3 29 29 H 1.08999 * 109.46871 * 188.38124 * 1 2 3 30 30 H 0.97007 * 119.99447 * 239.95780 * 5 2 1 31 31 H 1.08001 * 120.12350 * 0.02562 * 7 6 5 32 32 H 1.07998 * 120.02238 * 180.02562 * 8 7 6 33 33 H 1.07999 * 119.72971 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.38720 * 103.42334 * 12 11 10 35 35 H 1.08993 * 109.38857 * 223.22401 * 12 11 10 36 36 H 1.08997 * 109.62837 * 169.95109 * 13 12 11 37 37 H 1.08999 * 109.63501 * 290.54028 * 13 12 11 38 38 H 1.09003 * 109.46921 * 291.03486 * 15 14 13 39 39 H 1.08997 * 109.47028 * 51.03135 * 15 14 13 40 40 H 1.09003 * 109.46980 * 299.99669 * 16 15 14 41 41 H 1.08997 * 109.47694 * 59.99762 * 16 15 14 42 42 H 1.09003 * 109.47040 * 299.99764 * 17 16 15 43 43 H 1.08999 * 109.47580 * 59.99807 * 17 16 15 44 44 H 0.96991 * 120.00436 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.30202 * 292.25215 * 26 14 13 46 46 H 1.08997 * 109.13588 * 172.77126 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2272 -0.5910 1.4908 6 6 1.8151 -1.8692 1.8742 7 6 1.7476 -2.8858 0.9321 8 6 1.3392 -4.1482 1.3146 9 6 0.9985 -4.3936 2.6303 10 6 1.0632 -3.3804 3.5760 11 6 1.4731 -2.1199 3.2011 12 6 1.5641 -0.9889 4.1931 13 6 0.7738 -1.3388 5.4544 14 7 1.1854 -2.6737 5.9108 15 6 2.6464 -2.7599 6.0379 16 6 3.0219 -4.0758 6.7222 17 6 4.5435 -4.1660 6.8541 18 6 4.9134 -5.4618 7.5287 19 1 4.1404 -6.1518 7.8333 20 6 6.2385 -5.7664 7.7570 21 7 7.1798 -4.9264 7.3857 22 14 6.6969 -7.3723 8.5939 23 1 6.2014 -8.5127 7.7819 24 1 8.1738 -7.4599 8.7218 25 1 6.0800 -7.4209 9.9437 26 6 0.6760 -3.7003 4.9962 27 1 -0.3633 0.6381 0.8056 28 1 -0.3633 0.3787 -0.9553 29 1 -0.3633 -1.0167 0.1498 30 1 2.7555 -0.0492 2.0978 31 1 2.0134 -2.6904 -0.0962 32 1 1.2854 -4.9429 0.5853 33 1 0.6792 -5.3822 2.9255 34 1 2.6086 -0.8209 4.4554 35 1 1.1525 -0.0832 3.7479 36 1 0.9850 -0.6065 6.2336 37 1 -0.2927 -1.3411 5.2295 38 1 3.1001 -2.7231 5.0475 39 1 3.0091 -1.9233 6.6351 40 1 2.5681 -4.1126 7.7127 41 1 2.6591 -4.9124 6.1251 42 1 4.9968 -4.1293 5.8635 43 1 4.9067 -3.3294 7.4511 44 1 8.1120 -5.1405 7.5466 45 1 -0.4105 -3.7436 5.0723 46 1 1.0953 -4.6670 5.2749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171034074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:03 Heat of formation + Delta-G solvation = -45.814837 kcal Electronic energy + Delta-G solvation = -27680.367756 eV Core-core repulsion = 23889.650072 eV Total energy + Delta-G solvation = -3790.717684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.76740 -38.06710 -37.39997 -36.41373 -35.41290 -34.00375 -32.26172 -31.07432 -30.67841 -29.94883 -28.43044 -26.94107 -24.65163 -23.65907 -22.54390 -22.19304 -20.38773 -19.85876 -18.99763 -18.22615 -17.58832 -16.75113 -16.30630 -16.01132 -15.83895 -15.59670 -15.15307 -15.08071 -14.49249 -14.29666 -14.02487 -13.79304 -13.68358 -13.59549 -13.30789 -12.91014 -12.72711 -12.55242 -12.45187 -12.32837 -12.27433 -11.90864 -11.73182 -11.56980 -11.44367 -11.27806 -11.12393 -11.04038 -10.78639 -10.68590 -10.52296 -10.39828 -9.61141 -9.31790 -9.05121 -8.68207 -8.36145 -8.31644 -8.16538 -5.97163 -3.99330 -0.26093 1.19384 1.22864 2.16269 3.28767 3.35052 3.39373 3.41747 3.53344 3.75517 4.10491 4.27041 4.48726 4.49982 4.54466 4.70726 4.75805 4.88248 4.96978 5.07689 5.19663 5.27879 5.36613 5.38663 5.46483 5.54032 5.63802 5.72436 5.79775 5.84105 5.96425 5.96839 6.05866 6.13264 6.32806 6.43022 6.46485 6.53847 6.71132 6.76116 6.92685 7.11033 7.28398 7.33931 7.70406 7.85775 8.03092 8.46209 9.07671 9.64540 11.14294 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.002734 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.507328 B =10238.803235 C =10579.429385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.667 4.667 2 S 2.610 3.390 3 O -0.954 6.954 4 O -0.947 6.947 5 N -1.052 6.052 6 C 0.148 3.852 7 C -0.179 4.179 8 C -0.093 4.093 9 C -0.125 4.125 10 C -0.081 4.081 11 C -0.092 4.092 12 C -0.121 4.121 13 C 0.054 3.946 14 N -0.526 5.526 15 C 0.049 3.951 16 C -0.104 4.104 17 C 0.024 3.976 18 C -0.519 4.519 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.084 3.916 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.426 0.574 31 H 0.159 0.841 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.013 0.987 43 H 0.014 0.986 44 H 0.260 0.740 45 H 0.086 0.914 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.706 10.031 -14.450 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.818 4.818 2 S 2.703 3.297 3 O -0.944 6.944 4 O -0.937 6.937 5 N -0.802 5.802 6 C 0.052 3.948 7 C -0.200 4.200 8 C -0.111 4.111 9 C -0.144 4.144 10 C -0.084 4.084 11 C -0.096 4.096 12 C -0.159 4.159 13 C -0.075 4.075 14 N -0.246 5.246 15 C -0.078 4.078 16 C -0.142 4.142 17 C -0.014 4.014 18 C -0.557 4.557 19 H 0.072 0.928 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.044 4.044 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.264 0.736 31 H 0.176 0.824 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.104 0.896 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.193 10.241 -14.777 25.578 hybrid contribution 0.466 -0.624 0.160 0.795 sum -17.727 9.617 -14.617 24.907 Atomic orbital electron populations 1.30445 1.27343 1.12228 1.11777 1.05050 0.77920 0.73767 0.72923 1.93635 1.78205 1.37272 1.85279 1.93568 1.77127 1.60797 1.62221 1.53327 1.65662 1.22946 1.38249 1.17311 0.99691 0.83926 0.93918 1.21871 1.03975 0.92615 1.01523 1.20948 0.97884 0.96130 0.96169 1.21168 1.01222 0.99093 0.92944 1.20365 0.97828 0.92412 0.97770 1.19372 1.01832 0.95345 0.93099 1.21101 1.02662 0.96144 0.96026 1.22174 0.99048 0.91783 0.94473 1.62673 1.13704 1.02626 1.45627 1.22380 0.84986 1.00728 0.99664 1.21655 0.99902 0.93540 0.99129 1.19044 0.88607 0.96922 0.96834 1.21204 0.91830 1.04157 1.38508 0.92756 1.25022 0.96690 0.96876 0.95883 1.69951 1.00093 1.36041 1.47506 0.86669 0.77199 0.84096 0.80096 1.20265 1.21337 1.20237 1.21293 1.00398 0.97564 0.85170 0.85012 0.84970 0.84931 0.73639 0.82351 0.85368 0.85580 0.89873 0.90615 0.90040 0.90801 0.94490 0.91252 0.92636 0.93489 0.96908 0.96728 0.92990 0.89570 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.18 10.71 101.05 1.08 -2.10 16 2 S 2.61 21.93 5.87 -107.50 -0.63 21.30 16 3 O -0.95 -10.85 18.08 -57.54 -1.04 -11.89 16 4 O -0.95 -10.91 15.04 -57.54 -0.87 -11.78 16 5 N -1.05 -9.57 5.14 32.46 0.17 -9.40 16 6 C 0.15 1.63 6.10 -83.70 -0.51 1.12 16 7 C -0.18 -2.03 9.24 -39.44 -0.36 -2.39 16 8 C -0.09 -1.00 10.04 -39.69 -0.40 -1.40 16 9 C -0.12 -1.42 9.64 -39.44 -0.38 -1.80 16 10 C -0.08 -1.00 5.20 -104.64 -0.54 -1.54 16 11 C -0.09 -1.08 5.06 -104.40 -0.53 -1.61 16 12 C -0.12 -1.25 4.29 -27.93 -0.12 -1.37 16 13 C 0.05 0.58 6.01 -3.85 -0.02 0.56 16 14 N -0.53 -7.19 5.02 -236.37 -1.19 -8.38 16 15 C 0.05 0.83 3.96 -3.83 -0.02 0.81 16 16 C -0.10 -2.13 5.10 -26.73 -0.14 -2.27 16 17 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 18 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 19 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 22 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.08 1.05 5.43 -5.15 -0.03 1.02 16 27 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.13 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.43 3.45 8.09 -34.47 -0.28 3.17 16 31 H 0.16 1.78 5.16 -52.49 -0.27 1.51 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.08 0.95 7.05 -51.93 -0.37 0.58 16 35 H 0.08 0.59 7.73 -51.93 -0.40 0.19 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 38 H 0.04 0.65 5.87 -51.93 -0.30 0.34 16 39 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.94 6.35 -51.93 -0.33 0.61 16 42 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.10 1.35 6.02 -51.93 -0.31 1.03 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -35.87 373.32 -11.60 -47.47 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.87 Total: 0.81 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -2.52 Total: -24.06 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.28 Total: -44.29 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -1.91 Total: -23.66 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 21.93 SS G_CDS: -0.63 Total: 21.30 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.87 -11.60 -47.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171034074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.653 kcal (2) G-P(sol) polarization free energy of solvation -35.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds