Wall clock time and date at job start Sat Apr 11 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42093 * 110.54458 * 2 1 4 4 O 1.42100 * 110.54427 * 223.24068 * 2 1 3 5 5 N 1.65605 * 104.44767 * 111.62315 * 2 1 3 6 6 C 1.39669 * 120.00319 * 59.95962 * 5 2 1 7 7 C 1.38759 * 119.90392 * 35.49952 * 6 5 2 8 8 C 1.38085 * 119.74402 * 180.02562 * 7 6 5 9 9 C 1.38104 * 119.95135 * 0.08096 * 8 7 6 10 10 C 1.38747 * 120.53607 * 359.97438 * 9 8 7 11 11 C 1.37740 * 119.77591 * 359.86061 * 10 9 8 12 12 C 1.50713 * 121.70277 * 180.22379 * 11 10 9 13 13 C 1.52897 * 109.88153 * 343.32136 * 12 11 10 14 14 N 1.46956 * 108.61868 * 50.32793 * 13 12 11 15 15 C 1.46899 * 111.02531 * 52.07482 * 14 13 12 16 16 C 1.52995 * 109.47127 * 171.03781 * 15 14 13 17 17 C 1.52998 * 109.47104 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47448 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99641 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00470 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00145 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00202 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47038 * 60.00204 * 22 20 18 24 24 H 1.48501 * 109.47352 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47527 * 300.00114 * 22 20 18 26 26 C 1.46630 * 110.18172 * 288.68276 * 14 13 12 27 27 H 1.09004 * 109.46733 * 308.37995 * 1 2 3 28 28 H 1.08994 * 109.46837 * 68.37811 * 1 2 3 29 29 H 1.08999 * 109.46871 * 188.38124 * 1 2 3 30 30 H 0.97007 * 119.99447 * 239.95780 * 5 2 1 31 31 H 1.08001 * 120.12350 * 0.02562 * 7 6 5 32 32 H 1.07998 * 120.02238 * 180.02562 * 8 7 6 33 33 H 1.07999 * 119.72971 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.38720 * 103.42334 * 12 11 10 35 35 H 1.08993 * 109.38857 * 223.22401 * 12 11 10 36 36 H 1.08997 * 109.62837 * 169.95109 * 13 12 11 37 37 H 1.08999 * 109.63501 * 290.54028 * 13 12 11 38 38 H 1.09003 * 109.46921 * 291.03486 * 15 14 13 39 39 H 1.08997 * 109.47028 * 51.03135 * 15 14 13 40 40 H 1.09003 * 109.46980 * 299.99669 * 16 15 14 41 41 H 1.08997 * 109.47694 * 59.99762 * 16 15 14 42 42 H 1.09003 * 109.47040 * 299.99764 * 17 16 15 43 43 H 1.08999 * 109.47580 * 59.99807 * 17 16 15 44 44 H 0.96991 * 120.00436 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.30202 * 292.25215 * 26 14 13 46 46 H 1.08997 * 109.13588 * 172.77126 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2272 -0.5910 1.4908 6 6 1.8151 -1.8692 1.8742 7 6 1.7476 -2.8858 0.9321 8 6 1.3392 -4.1482 1.3146 9 6 0.9985 -4.3936 2.6303 10 6 1.0632 -3.3804 3.5760 11 6 1.4731 -2.1199 3.2011 12 6 1.5641 -0.9889 4.1931 13 6 0.7738 -1.3388 5.4544 14 7 1.1854 -2.6737 5.9108 15 6 2.6464 -2.7599 6.0379 16 6 3.0219 -4.0758 6.7222 17 6 4.5435 -4.1660 6.8541 18 6 4.9134 -5.4618 7.5287 19 1 4.1404 -6.1518 7.8333 20 6 6.2385 -5.7664 7.7570 21 7 7.1798 -4.9264 7.3857 22 14 6.6969 -7.3723 8.5939 23 1 6.2014 -8.5127 7.7819 24 1 8.1738 -7.4599 8.7218 25 1 6.0800 -7.4209 9.9437 26 6 0.6760 -3.7003 4.9962 27 1 -0.3633 0.6381 0.8056 28 1 -0.3633 0.3787 -0.9553 29 1 -0.3633 -1.0167 0.1498 30 1 2.7555 -0.0492 2.0978 31 1 2.0134 -2.6904 -0.0962 32 1 1.2854 -4.9429 0.5853 33 1 0.6792 -5.3822 2.9255 34 1 2.6086 -0.8209 4.4554 35 1 1.1525 -0.0832 3.7479 36 1 0.9850 -0.6065 6.2336 37 1 -0.2927 -1.3411 5.2295 38 1 3.1001 -2.7231 5.0475 39 1 3.0091 -1.9233 6.6351 40 1 2.5681 -4.1126 7.7127 41 1 2.6591 -4.9124 6.1251 42 1 4.9968 -4.1293 5.8635 43 1 4.9067 -3.3294 7.4511 44 1 8.1120 -5.1405 7.5466 45 1 -0.4105 -3.7436 5.0723 46 1 1.0953 -4.6670 5.2749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171034074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:02 Heat of formation + Delta-G solvation = -71.770755 kcal Electronic energy + Delta-G solvation = -27681.493289 eV Core-core repulsion = 23889.650072 eV Total energy + Delta-G solvation = -3791.843217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66560 -39.01556 -38.22505 -37.19132 -36.22787 -35.85592 -33.89251 -32.19534 -31.78486 -30.38964 -29.36835 -28.56198 -26.00005 -24.83241 -23.72158 -23.12779 -22.02857 -20.63127 -20.00280 -18.98935 -18.49867 -18.29324 -17.44811 -16.92341 -16.77057 -16.56623 -16.45545 -16.19433 -15.99681 -15.55338 -14.90645 -14.61688 -14.48050 -14.29029 -14.12459 -14.08613 -13.83816 -13.72417 -13.50876 -13.35010 -13.27119 -13.14662 -12.99491 -12.77986 -12.63977 -12.48572 -12.37303 -12.22357 -12.19576 -12.04712 -11.76992 -11.46020 -11.36519 -11.30001 -11.06704 -10.53981 -9.56366 -9.24769 -9.18183 -8.19358 -6.30488 -0.88851 0.32369 0.37720 1.39927 1.43269 1.48507 1.51078 2.41334 2.62693 2.72263 3.05202 3.12882 3.13802 3.71876 3.79982 3.84408 4.02406 4.04632 4.11526 4.14379 4.19944 4.25910 4.37894 4.52179 4.56489 4.64546 4.71322 4.76633 4.86354 4.88712 4.93865 4.99060 5.01532 5.08157 5.13367 5.19878 5.26724 5.31431 5.53076 5.58457 5.60780 5.76468 5.78625 5.86970 6.10278 6.12208 6.20677 6.28628 6.86683 7.38857 8.92448 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.002734 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.507328 B =10238.803235 C =10579.429385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.613 3.387 3 O -0.988 6.988 4 O -0.985 6.985 5 N -1.052 6.052 6 C 0.149 3.851 7 C -0.191 4.191 8 C -0.095 4.095 9 C -0.135 4.135 10 C -0.095 4.095 11 C -0.105 4.105 12 C -0.119 4.119 13 C 0.053 3.947 14 N -0.530 5.530 15 C 0.066 3.934 16 C -0.089 4.089 17 C 0.029 3.971 18 C -0.541 4.541 19 H 0.061 0.939 20 C -0.002 4.002 21 N -0.935 5.935 22 Si 0.964 3.036 23 H -0.266 1.266 24 H -0.284 1.284 25 H -0.265 1.265 26 C 0.085 3.915 27 H 0.154 0.846 28 H 0.157 0.843 29 H 0.142 0.858 30 H 0.429 0.571 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.139 0.861 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.025 0.975 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.050 0.950 42 H -0.016 1.016 43 H -0.011 1.011 44 H 0.263 0.737 45 H 0.110 0.890 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.075 9.702 -14.456 27.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.711 3.289 3 O -0.978 6.978 4 O -0.976 6.976 5 N -0.801 5.801 6 C 0.052 3.948 7 C -0.212 4.212 8 C -0.114 4.114 9 C -0.155 4.155 10 C -0.098 4.098 11 C -0.109 4.109 12 C -0.157 4.157 13 C -0.074 4.074 14 N -0.251 5.251 15 C -0.062 4.062 16 C -0.127 4.127 17 C -0.009 4.009 18 C -0.579 4.579 19 H 0.079 0.921 20 C -0.199 4.199 21 N -0.576 5.576 22 Si 0.789 3.211 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.190 1.190 26 C -0.043 4.043 27 H 0.172 0.828 28 H 0.175 0.825 29 H 0.160 0.840 30 H 0.267 0.733 31 H 0.175 0.825 32 H 0.166 0.834 33 H 0.157 0.843 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.002 0.998 43 H 0.008 0.992 44 H 0.072 0.928 45 H 0.128 0.872 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.543 9.918 -14.781 27.182 hybrid contribution 1.143 -0.481 0.112 1.246 sum -19.400 9.437 -14.669 26.088 Atomic orbital electron populations 1.30252 1.21741 1.13666 1.14191 1.04784 0.79775 0.72350 0.71996 1.93590 1.80190 1.38521 1.85532 1.93515 1.79310 1.61465 1.63263 1.53278 1.66088 1.22488 1.38232 1.17343 0.99235 0.84471 0.93735 1.22007 1.04453 0.93095 1.01666 1.21218 0.97149 0.96503 0.96494 1.21377 1.01398 0.99589 0.93089 1.20457 0.98554 0.92978 0.97761 1.19537 1.02133 0.95658 0.93587 1.21109 1.01878 0.96967 0.95788 1.22297 1.00252 0.90095 0.94779 1.62603 1.10983 1.04682 1.46843 1.22008 0.87498 0.98277 0.98371 1.21400 0.95761 0.95977 0.99590 1.18929 0.92300 0.95293 0.94366 1.21671 0.92414 1.05156 1.38704 0.92119 1.25999 0.96638 1.00807 0.96491 1.70095 1.00511 1.38247 1.48705 0.85511 0.76956 0.79352 0.79312 1.19095 1.20944 1.19003 1.21305 1.01573 0.96294 0.85101 0.82803 0.82532 0.83955 0.73338 0.82477 0.83414 0.84304 0.91439 0.87801 0.89349 0.88578 0.95680 0.91596 0.92790 0.93157 0.99806 0.99219 0.92840 0.87201 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -4.11 10.71 113.37 1.21 -2.90 16 2 S 2.61 41.93 5.87 -56.49 -0.33 41.60 16 3 O -0.99 -22.24 18.08 -127.65 -2.31 -24.54 16 4 O -0.99 -22.78 15.04 -127.65 -1.92 -24.70 16 5 N -1.05 -18.48 5.14 -51.22 -0.26 -18.74 16 6 C 0.15 3.16 6.10 38.27 0.23 3.39 16 7 C -0.19 -4.20 9.24 22.36 0.21 -3.99 16 8 C -0.10 -1.95 10.04 22.20 0.22 -1.73 16 9 C -0.14 -2.91 9.64 22.36 0.22 -2.70 16 10 C -0.10 -2.22 5.20 -19.88 -0.10 -2.33 16 11 C -0.10 -2.34 5.06 -19.72 -0.10 -2.44 16 12 C -0.12 -2.28 4.29 29.82 0.13 -2.16 16 13 C 0.05 1.04 6.01 86.26 0.52 1.56 16 14 N -0.53 -13.84 5.02 -901.72 -4.53 -18.37 16 15 C 0.07 2.24 3.96 86.30 0.34 2.58 16 16 C -0.09 -3.71 5.10 30.59 0.16 -3.55 16 17 C 0.03 1.55 4.97 29.85 0.15 1.69 16 18 C -0.54 -31.35 9.11 25.60 0.23 -31.12 16 19 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 20 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 21 N -0.94 -58.09 13.29 21.45 0.28 -57.80 16 22 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 C 0.09 2.01 5.43 85.59 0.46 2.47 16 27 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.43 6.86 8.09 -96.74 -0.78 6.08 16 31 H 0.16 3.50 5.16 -2.91 -0.02 3.48 16 32 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 33 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.07 1.52 7.05 -2.39 -0.02 1.50 16 35 H 0.10 1.37 7.73 -2.39 -0.02 1.35 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 1.48 8.04 -2.39 -0.02 1.46 16 38 H 0.02 0.90 5.87 -2.39 -0.01 0.89 16 39 H 0.07 2.24 8.09 -2.39 -0.02 2.22 16 40 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.05 2.04 6.35 -2.39 -0.02 2.02 16 42 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 43 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 44 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 45 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.08 2.19 6.02 -2.39 -0.01 2.18 16 Total: -1.00 -78.89 373.32 -2.49 -81.38 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.21 Total: 15.21 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 4.34 Total: -40.86 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -4.51 Total: -94.91 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -4.23 Total: -49.25 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 41.93 SS G_CDS: -0.33 Total: 41.60 kcal Total: -78.89 -2.49 -81.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171034074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.610 kcal (2) G-P(sol) polarization free energy of solvation -78.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds