Wall clock time and date at job start Sat Apr 11 2020 05:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86805 * 120.00013 * 2 1 4 4 H 1.48505 * 109.47149 * 272.89930 * 3 2 1 5 5 H 1.48501 * 109.47090 * 32.90092 * 3 2 1 6 6 H 1.48496 * 109.47307 * 152.90068 * 3 2 1 7 7 C 1.38813 * 120.00430 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99407 * 339.36211 * 7 2 1 9 9 N 1.36936 * 120.00250 * 159.36149 * 7 2 1 10 10 C 1.46919 * 120.63366 * 332.60172 * 9 7 2 11 11 C 1.53192 * 108.77946 * 233.63508 * 10 9 7 12 12 C 1.53046 * 109.30591 * 305.36330 * 11 10 9 13 13 C 1.53036 * 109.53919 * 61.36755 * 12 11 10 14 14 H 1.08992 * 109.52850 * 58.59989 * 13 12 11 15 15 C 1.53005 * 109.49755 * 178.68562 * 13 12 11 16 16 N 1.46497 * 109.46890 * 184.83810 * 15 13 12 17 17 C 1.34776 * 119.99585 * 179.97438 * 16 15 13 18 18 O 1.21277 * 120.00214 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99626 * 179.97438 * 17 16 15 20 20 F 1.39899 * 109.47196 * 274.99578 * 19 17 16 21 21 F 1.39899 * 109.47396 * 35.00475 * 19 17 16 22 22 C 1.50710 * 109.46839 * 155.00014 * 19 17 16 23 23 C 1.38232 * 119.99765 * 89.72653 * 22 19 17 24 24 C 1.38239 * 119.99827 * 179.78932 * 23 22 19 25 25 C 1.38231 * 119.99911 * 0.43617 * 24 23 22 26 26 C 1.38236 * 120.00086 * 359.81792 * 25 24 23 27 27 C 1.38236 * 119.99916 * 269.99834 * 22 19 17 28 28 C 1.46921 * 120.62815 * 152.62470 * 9 7 2 29 29 H 0.97005 * 120.00534 * 0.02562 * 1 2 3 30 30 H 1.09010 * 109.58789 * 353.41700 * 10 9 7 31 31 H 1.09000 * 109.58903 * 113.70039 * 10 9 7 32 32 H 1.08994 * 109.49788 * 65.31004 * 11 10 9 33 33 H 1.08997 * 109.49953 * 185.41390 * 11 10 9 34 34 H 1.09000 * 109.46150 * 301.33939 * 12 11 10 35 35 H 1.09004 * 109.45723 * 181.39029 * 12 11 10 36 36 H 1.08996 * 109.47596 * 64.83170 * 15 13 12 37 37 H 1.09001 * 109.46633 * 304.83450 * 15 13 12 38 38 H 0.97000 * 120.00217 * 359.97438 * 16 15 13 39 39 H 1.08002 * 120.00466 * 359.97438 * 23 22 19 40 40 H 1.08000 * 120.00077 * 180.28204 * 24 23 22 41 41 H 1.07995 * 120.00289 * 179.83678 * 25 24 23 42 42 H 1.08000 * 120.00223 * 179.97438 * 26 25 24 43 43 H 1.07994 * 120.00266 * 359.97438 * 27 22 19 44 44 H 1.09003 * 109.58943 * 6.58103 * 28 9 7 45 45 H 1.09006 * 109.58823 * 246.15560 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4363 2.0819 -1.3983 5 1 1.4796 2.6342 0.7605 6 1 3.5770 1.4233 0.6378 7 6 2.0102 -1.2021 -0.0005 8 1 1.5222 -2.1075 0.3287 9 7 3.3137 -1.2399 -0.4185 10 6 3.8175 -0.2585 -1.3888 11 6 4.4618 -1.0080 -2.5592 12 6 5.5283 -1.9649 -2.0216 13 6 4.8745 -2.9903 -1.0926 14 1 4.1078 -3.5399 -1.6386 15 6 5.9362 -3.9664 -0.5815 16 7 5.2929 -5.0150 0.2140 17 6 6.0372 -5.9920 0.7689 18 8 7.2394 -6.0033 0.6094 19 6 5.3755 -7.0703 1.5878 20 9 5.2190 -6.6258 2.9050 21 9 4.1213 -7.3661 1.0431 22 6 6.2338 -8.3091 1.5743 23 6 7.2063 -8.4866 2.5405 24 6 7.9906 -9.6249 2.5308 25 6 7.8084 -10.5814 1.5496 26 6 6.8394 -10.4014 0.5803 27 6 6.0522 -9.2651 0.5925 28 6 4.2349 -2.2631 0.0944 29 1 -0.4851 0.8400 -0.0004 30 1 2.9909 0.3503 -1.7556 31 1 4.5584 0.3817 -0.9099 32 1 3.6988 -1.5758 -3.0917 33 1 4.9243 -0.2925 -3.2390 34 1 6.2779 -1.3993 -1.4681 35 1 6.0056 -2.4816 -2.8543 36 1 6.6550 -3.4299 0.0378 37 1 6.4523 -4.4181 -1.4287 38 1 4.3313 -5.0061 0.3413 39 1 7.3514 -7.7374 3.3048 40 1 8.7474 -9.7658 3.2883 41 1 8.4229 -11.4695 1.5404 42 1 6.6973 -11.1485 -0.1866 43 1 5.2951 -9.1246 -0.1646 44 1 3.6838 -2.9772 0.7065 45 1 5.0117 -1.7881 0.6936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267141676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:14 Heat of formation + Delta-G solvation = -83.233078 kcal Electronic energy + Delta-G solvation = -29504.730495 eV Core-core repulsion = 25158.549848 eV Total energy + Delta-G solvation = -4346.180647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.50092 -47.50029 -40.07977 -39.26965 -38.14064 -35.23749 -33.13458 -32.42457 -31.28966 -31.07295 -30.81270 -27.81694 -25.72859 -25.24257 -22.98694 -22.71246 -22.01043 -21.47090 -20.78850 -19.56119 -18.55712 -18.30855 -17.85097 -16.76098 -16.52405 -15.90562 -15.51991 -15.37104 -15.09953 -14.98028 -14.94899 -14.32142 -14.14182 -13.95155 -13.92589 -13.61427 -13.54095 -13.46227 -13.25689 -12.99749 -12.79074 -12.69447 -12.61839 -12.19988 -11.72959 -11.62284 -11.52602 -11.48565 -10.85988 -10.69894 -10.61434 -10.27592 -10.15564 -9.92403 -9.70139 -9.48126 -9.35018 -9.29416 -9.28562 -8.64959 -7.02380 -5.98256 -3.34735 0.76982 1.03684 1.96794 2.43305 3.25145 3.29600 3.46588 3.49317 3.52393 3.64515 4.19999 4.36880 4.50062 4.62052 4.67998 4.72282 4.74700 5.06160 5.07190 5.13646 5.19064 5.20584 5.36711 5.43662 5.54113 5.64408 5.64985 5.69888 5.92765 5.99354 6.00984 6.02775 6.03661 6.11249 6.13488 6.26520 6.33260 6.48502 6.50664 6.53770 6.62454 6.66172 6.91097 7.09600 7.68661 7.91503 8.28598 8.89625 9.68236 10.05476 11.17508 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021745 B = 0.002580 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.367258 B =10851.552319 C =11403.880762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.884 3.116 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.086 0.914 9 N -0.605 5.605 10 C 0.123 3.877 11 C -0.134 4.134 12 C -0.100 4.100 13 C -0.121 4.121 14 H 0.081 0.919 15 C 0.125 3.875 16 N -0.702 5.702 17 C 0.488 3.512 18 O -0.499 6.499 19 C 0.333 3.667 20 F -0.173 7.173 21 F -0.179 7.179 22 C -0.142 4.142 23 C -0.068 4.068 24 C -0.122 4.122 25 C -0.100 4.100 26 C -0.122 4.122 27 C -0.081 4.081 28 C 0.154 3.846 29 H 0.263 0.737 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.412 0.588 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.060 0.940 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.575 -18.744 0.434 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.391 4.391 8 H 0.103 0.897 9 N -0.328 5.328 10 C -0.002 4.002 11 C -0.173 4.173 12 C -0.138 4.138 13 C -0.142 4.142 14 H 0.099 0.901 15 C 0.002 3.998 16 N -0.354 5.354 17 C 0.267 3.733 18 O -0.374 6.374 19 C 0.293 3.707 20 F -0.153 7.153 21 F -0.160 7.160 22 C -0.143 4.143 23 C -0.087 4.087 24 C -0.140 4.140 25 C -0.118 4.118 26 C -0.140 4.140 27 C -0.100 4.100 28 C 0.028 3.972 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.249 0.751 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.078 0.922 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 16.222 -18.611 0.354 24.690 hybrid contribution -0.314 1.092 0.163 1.148 sum 15.908 -17.519 0.517 23.669 Atomic orbital electron populations 1.69829 1.05735 1.26609 1.52805 1.25269 0.95216 0.97616 0.99377 0.86946 0.80018 0.84632 0.76985 1.21619 1.23167 1.19605 1.18900 0.84881 0.94792 1.40491 0.89689 1.44320 1.08574 1.33192 1.46726 1.21366 0.97320 0.92029 0.89519 1.21992 0.98026 0.98551 0.98744 1.21340 0.97795 0.96705 0.97965 1.21986 0.96924 0.95865 0.99379 0.90077 1.21622 0.95928 0.87590 0.94672 1.46092 1.12111 1.25819 1.51349 1.20472 0.88122 0.83048 0.81625 1.90776 1.13159 1.74561 1.58867 1.19682 0.80693 0.92429 0.77916 1.93103 1.95754 1.90444 1.36045 1.93080 1.43274 1.94247 1.85410 1.19769 0.99819 0.94827 0.99915 1.20919 0.93170 0.97560 0.97003 1.21140 0.99672 0.93894 0.99302 1.21324 0.97260 0.98938 0.94228 1.21118 0.96061 0.97529 0.99336 1.20940 0.98873 0.93181 0.96966 1.20948 0.92521 0.91354 0.92381 0.92726 0.90965 0.95732 0.91641 0.92592 0.92237 0.92680 0.90856 0.91115 0.75148 0.85071 0.85193 0.85464 0.85203 0.85080 0.92162 0.95721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.52 13.97 55.49 0.78 -26.75 16 2 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 3 Si 0.88 22.22 24.34 -169.99 -4.14 18.08 16 4 H -0.29 -6.98 6.62 56.52 0.37 -6.61 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.27 -6.71 6.63 56.52 0.37 -6.34 16 7 C -0.26 -7.17 10.03 -15.06 -0.15 -7.32 16 8 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 9 N -0.60 -13.87 2.77 -172.32 -0.48 -14.35 16 10 C 0.12 2.60 4.21 -3.71 -0.02 2.59 16 11 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 12 C -0.10 -1.42 5.17 -26.69 -0.14 -1.56 16 13 C -0.12 -1.78 2.38 -90.50 -0.22 -2.00 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 15 C 0.12 1.62 5.07 -4.04 -0.02 1.59 16 16 N -0.70 -9.07 5.26 -60.29 -0.32 -9.39 16 17 C 0.49 6.68 7.22 -10.98 -0.08 6.60 16 18 O -0.50 -7.91 16.22 5.56 0.09 -7.82 16 19 C 0.33 4.18 2.22 -29.03 -0.06 4.12 16 20 F -0.17 -2.27 16.20 2.25 0.04 -2.24 16 21 F -0.18 -2.20 15.66 2.25 0.04 -2.17 16 22 C -0.14 -1.65 4.39 -104.62 -0.46 -2.11 16 23 C -0.07 -0.72 9.35 -39.58 -0.37 -1.09 16 24 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 25 C -0.10 -0.76 10.05 -39.58 -0.40 -1.16 16 26 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 27 C -0.08 -0.82 9.40 -39.58 -0.37 -1.19 16 28 C 0.15 2.85 5.60 -3.71 -0.02 2.83 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.07 1.69 4.49 -51.92 -0.23 1.46 16 31 H 0.02 0.52 7.07 -51.93 -0.37 0.15 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.41 5.09 7.25 -40.82 -0.30 4.79 16 39 H 0.13 1.30 7.61 -52.49 -0.40 0.90 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.13 1.18 7.60 -52.49 -0.40 0.78 16 44 H 0.06 1.10 7.13 -51.93 -0.37 0.73 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -32.02 368.10 -8.13 -40.14 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.33 Total: 2.26 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.35 Total: -3.33 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.02 Total: -50.48 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.07 Total: -4.40 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.14 Total: 18.08 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.02 -8.13 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267141676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.090 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds