Wall clock time and date at job start Sat Apr 11 2020 05:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86805 * 120.00013 * 2 1 4 4 H 1.48505 * 109.47149 * 272.89930 * 3 2 1 5 5 H 1.48501 * 109.47090 * 32.90092 * 3 2 1 6 6 H 1.48496 * 109.47307 * 152.90068 * 3 2 1 7 7 C 1.38813 * 120.00430 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99407 * 339.36211 * 7 2 1 9 9 N 1.36936 * 120.00250 * 159.36149 * 7 2 1 10 10 C 1.46919 * 120.63366 * 332.60172 * 9 7 2 11 11 C 1.53192 * 108.77946 * 233.63508 * 10 9 7 12 12 C 1.53046 * 109.30591 * 305.36330 * 11 10 9 13 13 C 1.53036 * 109.53919 * 61.36755 * 12 11 10 14 14 H 1.08992 * 109.52850 * 58.59989 * 13 12 11 15 15 C 1.53005 * 109.49755 * 178.68562 * 13 12 11 16 16 N 1.46497 * 109.46890 * 184.83810 * 15 13 12 17 17 C 1.34776 * 119.99585 * 179.97438 * 16 15 13 18 18 O 1.21277 * 120.00214 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99626 * 179.97438 * 17 16 15 20 20 F 1.39899 * 109.47196 * 274.99578 * 19 17 16 21 21 F 1.39899 * 109.47396 * 35.00475 * 19 17 16 22 22 C 1.50710 * 109.46839 * 155.00014 * 19 17 16 23 23 C 1.38232 * 119.99765 * 89.72653 * 22 19 17 24 24 C 1.38239 * 119.99827 * 179.78932 * 23 22 19 25 25 C 1.38231 * 119.99911 * 0.43617 * 24 23 22 26 26 C 1.38236 * 120.00086 * 359.81792 * 25 24 23 27 27 C 1.38236 * 119.99916 * 269.99834 * 22 19 17 28 28 C 1.46921 * 120.62815 * 152.62470 * 9 7 2 29 29 H 0.97005 * 120.00534 * 0.02562 * 1 2 3 30 30 H 1.09010 * 109.58789 * 353.41700 * 10 9 7 31 31 H 1.09000 * 109.58903 * 113.70039 * 10 9 7 32 32 H 1.08994 * 109.49788 * 65.31004 * 11 10 9 33 33 H 1.08997 * 109.49953 * 185.41390 * 11 10 9 34 34 H 1.09000 * 109.46150 * 301.33939 * 12 11 10 35 35 H 1.09004 * 109.45723 * 181.39029 * 12 11 10 36 36 H 1.08996 * 109.47596 * 64.83170 * 15 13 12 37 37 H 1.09001 * 109.46633 * 304.83450 * 15 13 12 38 38 H 0.97000 * 120.00217 * 359.97438 * 16 15 13 39 39 H 1.08002 * 120.00466 * 359.97438 * 23 22 19 40 40 H 1.08000 * 120.00077 * 180.28204 * 24 23 22 41 41 H 1.07995 * 120.00289 * 179.83678 * 25 24 23 42 42 H 1.08000 * 120.00223 * 179.97438 * 26 25 24 43 43 H 1.07994 * 120.00266 * 359.97438 * 27 22 19 44 44 H 1.09003 * 109.58943 * 6.58103 * 28 9 7 45 45 H 1.09006 * 109.58823 * 246.15560 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4363 2.0819 -1.3983 5 1 1.4796 2.6342 0.7605 6 1 3.5770 1.4233 0.6378 7 6 2.0102 -1.2021 -0.0005 8 1 1.5222 -2.1075 0.3287 9 7 3.3137 -1.2399 -0.4185 10 6 3.8175 -0.2585 -1.3888 11 6 4.4618 -1.0080 -2.5592 12 6 5.5283 -1.9649 -2.0216 13 6 4.8745 -2.9903 -1.0926 14 1 4.1078 -3.5399 -1.6386 15 6 5.9362 -3.9664 -0.5815 16 7 5.2929 -5.0150 0.2140 17 6 6.0372 -5.9920 0.7689 18 8 7.2394 -6.0033 0.6094 19 6 5.3755 -7.0703 1.5878 20 9 5.2190 -6.6258 2.9050 21 9 4.1213 -7.3661 1.0431 22 6 6.2338 -8.3091 1.5743 23 6 7.2063 -8.4866 2.5405 24 6 7.9906 -9.6249 2.5308 25 6 7.8084 -10.5814 1.5496 26 6 6.8394 -10.4014 0.5803 27 6 6.0522 -9.2651 0.5925 28 6 4.2349 -2.2631 0.0944 29 1 -0.4851 0.8400 -0.0004 30 1 2.9909 0.3503 -1.7556 31 1 4.5584 0.3817 -0.9099 32 1 3.6988 -1.5758 -3.0917 33 1 4.9243 -0.2925 -3.2390 34 1 6.2779 -1.3993 -1.4681 35 1 6.0056 -2.4816 -2.8543 36 1 6.6550 -3.4299 0.0378 37 1 6.4523 -4.4181 -1.4287 38 1 4.3313 -5.0061 0.3413 39 1 7.3514 -7.7374 3.3048 40 1 8.7474 -9.7658 3.2883 41 1 8.4229 -11.4695 1.5404 42 1 6.6973 -11.1485 -0.1866 43 1 5.2951 -9.1246 -0.1646 44 1 3.6838 -2.9772 0.7065 45 1 5.0117 -1.7881 0.6936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267141676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:13 Heat of formation + Delta-G solvation = -102.751794 kcal Electronic energy + Delta-G solvation = -29505.576890 eV Core-core repulsion = 25158.549848 eV Total energy + Delta-G solvation = -4347.027042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.49837 -48.50456 -41.13283 -40.06480 -39.51617 -36.56036 -34.80841 -33.21404 -32.86346 -32.24121 -31.94501 -28.84331 -27.30864 -26.63891 -23.80973 -23.65512 -23.58209 -22.67637 -21.83263 -20.93393 -19.63892 -19.14407 -18.84213 -18.70407 -17.40587 -17.27901 -16.80101 -16.65419 -16.16690 -15.86196 -15.68575 -15.65851 -15.49403 -15.16067 -15.09472 -14.88284 -14.86239 -14.55296 -14.28743 -14.23396 -14.05299 -13.75989 -13.69501 -13.59301 -13.31581 -13.21506 -12.57297 -12.34483 -12.22102 -12.15550 -12.11645 -11.73117 -11.60495 -11.45874 -11.28619 -11.14867 -10.67838 -10.38031 -10.04543 -9.96069 -8.94114 -8.17598 -5.49170 0.06033 0.36833 0.88939 1.28339 1.40239 1.43125 1.48877 2.40419 2.43309 2.66269 2.75436 3.03935 3.27623 3.30703 3.40276 3.78888 3.90767 3.97536 3.98283 3.99593 4.19767 4.23461 4.34834 4.46829 4.49022 4.53802 4.60605 4.72387 4.73771 4.79005 4.80264 4.95963 4.98978 5.01281 5.07903 5.20909 5.26699 5.27407 5.33037 5.38813 5.47811 5.55408 5.85276 5.91702 6.02286 6.11704 6.61425 6.90886 7.61553 8.01799 9.02153 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021745 B = 0.002580 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.367258 B =10851.552319 C =11403.880762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.036 4.036 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.313 1.313 6 H -0.263 1.263 7 C -0.248 4.248 8 H 0.054 0.946 9 N -0.620 5.620 10 C 0.114 3.886 11 C -0.127 4.127 12 C -0.097 4.097 13 C -0.106 4.106 14 H 0.075 0.925 15 C 0.133 3.867 16 N -0.701 5.701 17 C 0.490 3.510 18 O -0.521 6.521 19 C 0.333 3.667 20 F -0.180 7.180 21 F -0.181 7.181 22 C -0.166 4.166 23 C -0.089 4.089 24 C -0.124 4.124 25 C -0.096 4.096 26 C -0.123 4.123 27 C -0.098 4.098 28 C 0.149 3.851 29 H 0.261 0.739 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.414 0.586 39 H 0.127 0.873 40 H 0.154 0.846 41 H 0.160 0.840 42 H 0.157 0.843 43 H 0.134 0.866 44 H 0.052 0.948 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.705 -19.975 -0.669 27.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.230 4.230 3 Si 0.776 3.224 4 H -0.200 1.200 5 H -0.243 1.243 6 H -0.188 1.188 7 C -0.377 4.377 8 H 0.071 0.929 9 N -0.344 5.344 10 C -0.010 4.010 11 C -0.166 4.166 12 C -0.135 4.135 13 C -0.127 4.127 14 H 0.093 0.907 15 C 0.010 3.990 16 N -0.352 5.352 17 C 0.270 3.730 18 O -0.397 6.397 19 C 0.293 3.707 20 F -0.161 7.161 21 F -0.161 7.161 22 C -0.167 4.167 23 C -0.108 4.108 24 C -0.142 4.142 25 C -0.114 4.114 26 C -0.141 4.141 27 C -0.116 4.116 28 C 0.024 3.976 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.250 0.750 39 H 0.145 0.855 40 H 0.172 0.828 41 H 0.178 0.822 42 H 0.174 0.826 43 H 0.152 0.848 44 H 0.071 0.929 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 19.396 -19.854 -0.765 27.766 hybrid contribution -1.273 1.347 0.525 1.926 sum 18.123 -18.507 -0.240 25.903 Atomic orbital electron populations 1.69959 1.07388 1.27170 1.55771 1.25894 0.95815 1.00931 1.00406 0.85915 0.78613 0.80341 0.77522 1.20006 1.24255 1.18790 1.18870 0.86753 0.93541 1.38568 0.92853 1.44458 1.07708 1.34538 1.47689 1.21463 0.96726 0.92103 0.90748 1.21905 0.98392 0.99142 0.97148 1.21359 0.97085 0.96141 0.98873 1.21776 0.97128 0.96013 0.97738 0.90679 1.21553 0.95107 0.87156 0.95171 1.46133 1.12214 1.25706 1.51152 1.20613 0.87856 0.83098 0.81395 1.90754 1.13984 1.75137 1.59775 1.19714 0.80808 0.92864 0.77304 1.93080 1.95811 1.90622 1.36584 1.93070 1.43427 1.94249 1.85399 1.19847 1.00626 0.94890 1.01368 1.21078 0.93876 0.98685 0.97122 1.21490 0.99526 0.93133 1.00052 1.21757 0.96904 0.99563 0.93163 1.21498 0.95396 0.97199 0.99984 1.21142 0.99716 0.93801 0.96927 1.21125 0.91885 0.90480 0.94090 0.92998 0.93584 0.95059 0.92671 0.89786 0.91216 0.89379 0.90721 0.89474 0.74971 0.85500 0.82788 0.82219 0.82566 0.84768 0.92925 0.95137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.16 13.97 21.65 0.30 -59.86 16 2 C -0.04 -2.09 5.23 84.86 0.44 -1.64 16 3 Si 0.95 46.64 24.34 68.60 1.67 48.31 16 4 H -0.27 -12.65 6.62 99.48 0.66 -11.99 16 5 H -0.31 -15.80 7.11 99.48 0.71 -15.10 16 6 H -0.26 -12.45 6.63 99.48 0.66 -11.79 16 7 C -0.25 -13.87 10.03 84.03 0.84 -13.03 16 8 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 9 N -0.62 -28.22 2.77 -699.09 -1.94 -30.15 16 10 C 0.11 4.65 4.21 86.36 0.36 5.01 16 11 C -0.13 -3.87 6.08 30.67 0.19 -3.69 16 12 C -0.10 -2.39 5.17 30.62 0.16 -2.23 16 13 C -0.11 -2.90 2.38 -10.71 -0.03 -2.93 16 14 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 15 C 0.13 3.14 5.07 86.38 0.44 3.57 16 16 N -0.70 -17.52 5.26 -463.06 -2.44 -19.95 16 17 C 0.49 13.20 7.22 87.66 0.63 13.84 16 18 O -0.52 -16.10 16.22 -3.02 -0.05 -16.15 16 19 C 0.33 8.45 2.22 29.11 0.06 8.51 16 20 F -0.18 -4.87 16.20 44.97 0.73 -4.14 16 21 F -0.18 -4.50 15.66 44.97 0.70 -3.80 16 22 C -0.17 -3.82 4.39 -19.86 -0.09 -3.91 16 23 C -0.09 -1.85 9.35 22.27 0.21 -1.64 16 24 C -0.12 -1.86 10.05 22.27 0.22 -1.63 16 25 C -0.10 -1.19 10.05 22.27 0.22 -0.96 16 26 C -0.12 -1.74 10.05 22.27 0.22 -1.51 16 27 C -0.10 -1.89 9.40 22.27 0.21 -1.68 16 28 C 0.15 5.39 5.60 86.37 0.48 5.87 16 29 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 30 H 0.05 2.11 4.49 -2.38 -0.01 2.10 16 31 H 0.03 1.24 7.07 -2.39 -0.02 1.22 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 35 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.41 10.15 7.25 -92.71 -0.67 9.48 16 39 H 0.13 2.57 7.61 -2.91 -0.02 2.55 16 40 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 42 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 43 H 0.13 2.35 7.60 -2.91 -0.02 2.33 16 44 H 0.05 1.94 7.13 -2.39 -0.02 1.92 16 45 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -71.24 368.10 3.82 -67.42 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.24 Total: 16.36 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 4.59 Total: 1.95 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -4.07 Total: -109.96 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.05 Total: -16.15 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 1.43 Total: -7.93 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.67 Total: 48.31 kcal Total: -71.24 3.82 -67.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267141676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.329 kcal (2) G-P(sol) polarization free energy of solvation -71.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds