Wall clock time and date at job start Sat Apr 11 2020 05:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48496 * 109.47191 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.46981 * 30.00086 * 3 2 1 6 6 H 1.48500 * 109.46794 * 149.99743 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36931 * 120.00220 * 343.08678 * 7 2 1 10 10 C 1.46925 * 120.62943 * 331.81086 * 9 7 2 11 11 C 1.53198 * 108.77358 * 233.63033 * 10 9 7 12 12 C 1.53044 * 109.30949 * 305.36214 * 11 10 9 13 13 C 1.53350 * 109.60893 * 61.37664 * 12 11 10 14 14 H 1.09000 * 109.47180 * 58.54812 * 13 12 11 15 15 C 1.52994 * 109.68363 * 178.74575 * 13 12 11 16 16 N 1.46501 * 109.46970 * 184.74873 * 15 13 12 17 17 C 1.34782 * 119.99960 * 179.97438 * 16 15 13 18 18 O 1.21280 * 119.99901 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99873 * 180.02562 * 17 16 15 20 20 C 1.50703 * 109.46767 * 179.97438 * 19 17 16 21 21 C 1.38207 * 119.99442 * 100.00141 * 20 19 17 22 22 C 1.38433 * 119.99742 * 179.97438 * 21 20 19 23 23 F 1.35097 * 119.99959 * 179.97438 * 22 21 20 24 24 C 1.38469 * 119.99945 * 359.97438 * 22 21 20 25 25 C 1.38160 * 120.00125 * 359.95779 * 24 22 21 26 26 C 1.38422 * 120.00004 * 279.72346 * 20 19 17 27 27 F 1.35092 * 120.00450 * 0.02832 * 26 20 19 28 28 C 1.46925 * 120.63201 * 151.82683 * 9 7 2 29 29 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.58495 * 353.41108 * 10 9 7 31 31 H 1.09000 * 109.58924 * 113.69864 * 10 9 7 32 32 H 1.08996 * 109.49910 * 65.31427 * 11 10 9 33 33 H 1.09005 * 109.49856 * 185.41495 * 11 10 9 34 34 H 1.09001 * 109.45649 * 181.38940 * 12 11 10 35 35 H 1.08997 * 109.45937 * 301.35490 * 12 11 10 36 36 H 1.09002 * 109.47263 * 304.75206 * 15 13 12 37 37 H 1.09005 * 109.47395 * 64.75266 * 15 13 12 38 38 H 0.97001 * 120.00228 * 0.02562 * 16 15 13 39 39 H 1.08997 * 109.46908 * 300.00308 * 19 17 16 40 40 H 1.09005 * 109.46857 * 60.00110 * 19 17 16 41 41 H 1.07998 * 120.00480 * 359.95840 * 21 20 19 42 42 H 1.07998 * 119.99939 * 179.97438 * 24 22 21 43 43 H 1.07998 * 120.00294 * 180.02562 * 25 24 22 44 44 H 1.08997 * 109.58983 * 246.15688 * 28 9 7 45 45 H 1.08993 * 109.58892 * 6.44125 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3460 10 6 0.2264 -2.3401 1.2681 11 6 0.4985 -3.3188 2.4148 12 6 0.8133 -4.7005 1.8369 13 6 2.0708 -4.6187 0.9632 14 1 2.9059 -4.2543 1.5615 15 6 2.4050 -6.0053 0.4097 16 7 3.6680 -5.9444 -0.3301 17 6 4.1639 -7.0557 -0.9094 18 8 3.5643 -8.1060 -0.8187 19 6 5.4635 -6.9932 -1.6699 20 6 5.7932 -8.3593 -2.2141 21 6 5.5277 -8.6586 -3.5370 22 6 5.8311 -9.9133 -4.0372 23 9 5.5711 -10.2060 -5.3302 24 6 6.4009 -10.8682 -3.2121 25 6 6.6675 -10.5686 -1.8900 26 6 6.3671 -9.3124 -1.3905 27 9 6.6312 -9.0182 -0.0988 28 6 1.8140 -3.6529 -0.1980 29 1 -0.4849 0.8400 0.0004 30 1 0.0994 -1.3343 1.6686 31 1 -0.6773 -2.6386 0.7368 32 1 1.3483 -2.9669 2.9996 33 1 -0.3819 -3.3839 3.0543 34 1 0.9831 -5.4047 2.6514 35 1 -0.0270 -5.0411 1.2318 36 1 2.5003 -6.7122 1.2339 37 1 1.6080 -6.3316 -0.2585 38 1 4.1478 -5.1045 -0.4023 39 1 5.3684 -6.2865 -2.4943 40 1 6.2603 -6.6668 -1.0015 41 1 5.0835 -7.9137 -4.1806 42 1 6.6371 -11.8472 -3.6021 43 1 7.1123 -11.3133 -1.2466 44 1 1.0402 -4.0609 -0.8482 45 1 2.7330 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267219966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:19 Heat of formation + Delta-G solvation = -112.416662 kcal Electronic energy + Delta-G solvation = -28680.019001 eV Core-core repulsion = 24332.572859 eV Total energy + Delta-G solvation = -4347.446142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.96872 -49.94534 -41.04490 -39.77710 -39.16095 -36.24677 -34.67080 -34.06816 -32.29038 -31.97347 -31.16063 -29.04973 -27.23485 -26.48045 -24.09314 -23.83461 -23.30741 -22.39951 -21.47825 -20.57363 -18.79133 -18.63166 -18.28178 -18.25149 -18.03443 -16.92102 -16.84657 -16.69386 -16.52030 -16.33959 -15.79381 -15.52235 -15.36702 -15.30837 -15.04630 -14.75599 -14.51212 -14.41502 -14.16772 -13.95892 -13.76118 -13.72054 -13.57026 -13.00313 -12.90097 -12.86507 -12.77649 -12.48620 -12.26204 -12.05148 -11.97444 -11.81616 -11.57716 -11.35862 -11.10293 -10.96400 -10.52085 -10.14204 -10.05991 -9.54931 -8.66480 -7.85741 -5.31563 -0.09832 0.00900 1.47740 1.49879 1.58879 1.62757 2.10547 2.48236 2.52269 3.11428 3.18894 3.29551 3.41843 3.60734 3.62310 3.90548 3.99878 4.00389 4.02222 4.09341 4.11541 4.34445 4.41144 4.48389 4.58353 4.61823 4.73986 4.78107 4.88918 4.91904 4.93535 4.98963 5.01371 5.02072 5.10010 5.11143 5.23724 5.33918 5.39521 5.49447 5.58265 5.67902 5.76444 5.79059 6.40217 6.54806 7.16098 7.22983 7.87667 8.39964 9.20699 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016457 B = 0.002258 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.012996 B =12398.058924 C =13091.883732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.054 4.054 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.260 4.260 8 H 0.073 0.927 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.100 4.100 14 H 0.078 0.922 15 C 0.139 3.861 16 N -0.717 5.717 17 C 0.513 3.487 18 O -0.580 6.580 19 C -0.102 4.102 20 C -0.081 4.081 21 C -0.121 4.121 22 C 0.075 3.925 23 F -0.142 7.142 24 C -0.120 4.120 25 C -0.123 4.123 26 C 0.085 3.915 27 F -0.142 7.142 28 C 0.153 3.847 29 H 0.248 0.752 30 H 0.051 0.949 31 H -0.008 1.008 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.414 0.586 39 H 0.140 0.860 40 H 0.129 0.871 41 H 0.158 0.842 42 H 0.171 0.829 43 H 0.169 0.831 44 H 0.004 0.996 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.956 -19.746 -3.005 24.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.794 3.206 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.390 4.390 8 H 0.090 0.910 9 N -0.333 5.333 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.096 0.904 15 C 0.014 3.986 16 N -0.369 5.369 17 C 0.300 3.700 18 O -0.460 6.460 19 C -0.141 4.141 20 C -0.083 4.083 21 C -0.140 4.140 22 C 0.056 3.944 23 F -0.120 7.120 24 C -0.139 4.139 25 C -0.142 4.142 26 C 0.066 3.934 27 F -0.120 7.120 28 C 0.027 3.973 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.251 0.749 39 H 0.158 0.842 40 H 0.147 0.853 41 H 0.175 0.825 42 H 0.188 0.812 43 H 0.186 0.814 44 H 0.022 0.978 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.425 -20.331 -2.942 25.101 hybrid contribution -0.091 1.601 -0.157 1.612 sum 14.334 -18.730 -3.099 23.788 Atomic orbital electron populations 1.70199 1.06823 1.25757 1.55585 1.25825 0.95979 1.01625 1.01464 0.85301 0.78167 0.79601 0.77517 1.21211 1.22315 1.19193 1.19542 0.92969 0.85835 1.40633 0.90962 1.44305 1.35854 1.02330 1.50762 1.20627 0.87736 0.97732 0.89246 1.21994 1.00931 0.95928 0.98018 1.21391 0.96618 0.96729 0.98848 1.21766 0.98972 0.93489 0.97811 0.90402 1.21214 0.85308 0.96612 0.95418 1.45993 1.24608 1.12212 1.54089 1.20878 0.87120 0.83166 0.78800 1.90700 1.62271 1.31096 1.61947 1.20716 0.95486 0.95282 1.02648 1.19294 0.99682 0.95958 0.93348 1.21081 1.00894 0.96735 0.95278 1.17820 1.02271 0.94999 0.79300 1.91507 1.92145 1.93807 1.34567 1.21274 0.99189 1.00685 0.92738 1.21245 1.01335 0.95309 0.96309 1.17813 1.01566 0.95243 0.78785 1.91483 1.91819 1.93840 1.34877 1.21019 0.97202 0.85645 0.93393 0.94254 0.93081 0.99036 0.92757 0.91363 0.90339 0.92800 0.91364 0.92687 0.74940 0.84183 0.85265 0.82478 0.81153 0.81361 0.97795 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.09 11.20 21.65 0.24 -54.85 16 2 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 3 Si 0.97 43.72 29.59 68.60 2.03 45.75 16 4 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.26 -13.70 9.58 84.03 0.81 -12.89 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 9 N -0.61 -29.39 2.99 -699.09 -2.09 -31.48 16 10 C 0.17 8.19 5.30 86.36 0.46 8.64 16 11 C -0.13 -4.65 6.08 30.68 0.19 -4.47 16 12 C -0.10 -2.96 5.19 30.73 0.16 -2.80 16 13 C -0.10 -2.99 2.39 -10.61 -0.03 -3.01 16 14 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 15 C 0.14 3.67 5.08 86.38 0.44 4.11 16 16 N -0.72 -16.47 5.33 -463.05 -2.47 -18.94 16 17 C 0.51 12.49 7.82 87.66 0.69 13.18 16 18 O -0.58 -18.98 15.96 -3.03 -0.05 -19.03 16 19 C -0.10 -1.67 5.56 29.10 0.16 -1.51 16 20 C -0.08 -1.55 4.42 -19.83 -0.09 -1.63 16 21 C -0.12 -2.14 9.65 22.31 0.22 -1.93 16 22 C 0.08 1.32 7.30 22.37 0.16 1.49 16 23 F -0.14 -2.68 17.27 44.97 0.78 -1.91 16 24 C -0.12 -1.68 10.02 22.31 0.22 -1.45 16 25 C -0.12 -1.85 10.02 22.31 0.22 -1.62 16 26 C 0.09 1.69 7.14 22.37 0.16 1.84 16 27 F -0.14 -3.13 16.65 44.97 0.75 -2.39 16 28 C 0.15 5.84 5.59 86.36 0.48 6.32 16 29 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.05 2.77 6.06 -2.39 -0.01 2.75 16 31 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 1.60 8.14 -2.38 -0.02 1.59 16 38 H 0.41 7.91 7.70 -92.71 -0.71 7.20 16 39 H 0.14 1.52 8.00 -2.39 -0.02 1.50 16 40 H 0.13 1.64 7.94 -2.38 -0.02 1.62 16 41 H 0.16 2.26 8.04 -2.91 -0.02 2.24 16 42 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 43 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.06 2.14 7.13 -2.39 -0.02 2.12 16 Total: -1.00 -70.51 376.82 4.16 -66.35 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.30 Total: 14.76 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 4.67 Total: 1.73 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -4.32 Total: -105.28 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.05 Total: -19.03 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 1.53 Total: -4.29 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -70.51 4.16 -66.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267219966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.062 kcal (2) G-P(sol) polarization free energy of solvation -70.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds