Wall clock time and date at job start Sat Apr 11 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99586 * 2 1 4 4 H 1.48498 * 109.47214 * 240.00333 * 3 2 1 5 5 H 1.48503 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47110 * 119.99729 * 3 2 1 7 7 C 1.38810 * 120.00544 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99689 * 199.55272 * 7 2 1 9 9 N 1.36937 * 119.99692 * 19.55015 * 7 2 1 10 10 C 1.46499 * 120.00297 * 37.58026 * 9 7 2 11 11 N 1.46503 * 109.47117 * 89.99107 * 10 9 7 12 12 N 1.40174 * 126.34573 * 89.97892 * 11 10 9 13 13 C 1.29425 * 108.13043 * 180.02562 * 12 11 10 14 14 C 1.50702 * 125.58129 * 179.97438 * 13 12 11 15 15 O 1.42892 * 109.46788 * 270.02184 * 14 13 12 16 16 N 1.37313 * 108.83311 * 359.97438 * 13 12 11 17 17 C 1.46503 * 125.82374 * 179.97438 * 16 13 12 18 18 C 1.53010 * 117.49411 * 161.69093 * 17 16 13 19 19 C 1.53000 * 117.49956 * 230.34913 * 17 16 13 20 20 C 1.34808 * 108.34498 * 0.26636 * 16 13 12 21 21 S 1.71203 * 126.30211 * 179.72714 * 20 16 13 22 22 C 1.46505 * 119.99772 * 217.57357 * 9 7 2 23 23 C 1.54265 * 110.03009 * 54.24576 * 22 9 7 24 24 C 1.54964 * 104.15934 * 217.13288 * 23 22 9 25 25 C 1.54886 * 102.77511 * 37.88999 * 24 23 22 26 26 C 1.53869 * 110.03559 * 297.02723 * 22 9 7 27 27 H 0.96994 * 120.00748 * 4.80653 * 1 2 3 28 28 H 1.09003 * 109.46801 * 329.99982 * 10 9 7 29 29 H 1.08991 * 109.47556 * 209.99845 * 10 9 7 30 30 H 1.08996 * 109.47005 * 30.02231 * 14 13 12 31 31 H 1.08996 * 109.47003 * 150.01983 * 14 13 12 32 32 H 0.96707 * 114.00000 * 180.02562 * 15 14 13 33 33 H 1.08996 * 115.54983 * 16.02626 * 17 16 13 34 34 H 1.08993 * 117.49751 * 215.00058 * 18 17 16 35 35 H 1.08999 * 117.49565 * 0.02770 * 18 17 16 36 36 H 1.08997 * 117.49735 * 359.97438 * 19 17 16 37 37 H 1.09001 * 117.49843 * 144.97646 * 19 17 16 38 38 H 1.08996 * 110.01195 * 175.63263 * 22 9 7 39 39 H 1.08997 * 110.49002 * 335.78401 * 23 22 9 40 40 H 1.09003 * 110.48552 * 98.42298 * 23 22 9 41 41 H 1.08999 * 110.71887 * 279.57429 * 24 23 22 42 42 H 1.09004 * 110.92120 * 156.30005 * 24 23 22 43 43 H 1.09001 * 110.48231 * 203.40369 * 25 24 23 44 44 H 1.09000 * 110.59925 * 80.81728 * 25 24 23 45 45 H 1.08997 * 110.03514 * 238.56721 * 26 22 9 46 46 H 1.09001 * 110.03218 * 359.95382 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0436 -1.2290 0.3125 9 7 1.3849 -2.3536 -0.3979 10 6 0.4289 -2.3226 -1.5075 11 7 1.1360 -2.5618 -2.7682 12 7 1.3674 -3.8077 -3.3674 13 6 2.0220 -3.6106 -4.4664 14 6 2.4759 -4.6845 -5.4213 15 8 3.7812 -5.1314 -5.0498 16 7 2.2351 -2.2628 -4.6198 17 6 2.9405 -1.6278 -5.7358 18 6 2.7117 -0.1310 -5.9560 19 6 4.0466 -0.6272 -5.3947 20 6 1.6901 -1.6243 -3.5650 21 16 1.6966 0.0653 -3.2890 22 6 1.6720 -3.6167 0.2866 23 6 1.4445 -3.4589 1.8042 24 6 2.5679 -4.3115 2.4465 25 6 3.7738 -4.0504 1.5103 26 6 3.1522 -3.9931 0.0996 27 1 -0.4851 0.8370 -0.0704 28 1 -0.0558 -1.3469 -1.5423 29 1 -0.3238 -3.0971 -1.3605 30 1 1.7802 -5.5227 -5.3827 31 1 2.5040 -4.2821 -6.4339 32 1 4.1377 -5.8242 -5.6227 33 1 3.0803 -2.2508 -6.6191 34 1 2.7011 0.2306 -6.9841 35 1 2.0368 0.3812 -5.2703 36 1 4.2492 -0.4412 -4.3400 37 1 4.9144 -0.5924 -6.0534 38 1 1.0331 -4.4075 -0.1065 39 1 1.5434 -2.4140 2.0982 40 1 0.4642 -3.8440 2.0851 41 1 2.2991 -5.3678 2.4449 42 1 2.7841 -3.9710 3.4592 43 1 4.4927 -4.8670 1.5776 44 1 4.2514 -3.1018 1.7556 45 1 3.2318 -4.9670 -0.3833 46 1 3.6568 -3.2364 -0.5010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305716008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:49 Heat of formation + Delta-G solvation = 101.348140 kcal Electronic energy + Delta-G solvation = -29143.737549 eV Core-core repulsion = 25391.694082 eV Total energy + Delta-G solvation = -3752.043467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.03168 -37.95741 -37.17585 -37.14289 -34.73873 -32.65607 -31.66713 -30.93084 -28.03660 -27.92126 -26.56752 -25.88380 -23.85307 -22.29201 -22.04788 -21.56344 -20.46758 -19.97501 -19.15827 -17.99490 -17.73746 -16.53814 -16.19974 -15.65990 -15.49470 -15.03820 -14.80759 -14.68826 -14.42469 -14.22239 -14.08133 -13.57600 -13.08560 -12.84727 -12.61116 -12.42333 -11.61982 -11.59841 -11.34921 -11.28698 -11.23974 -10.97398 -10.74934 -10.51685 -10.49492 -10.45441 -10.35518 -10.29251 -10.24615 -10.15163 -10.09266 -9.99199 -9.82939 -9.64390 -9.22197 -8.43482 -6.92484 -6.68997 -6.15316 -5.89279 -3.46451 1.91300 1.95704 2.16863 3.00282 3.17552 3.59083 3.63018 3.81040 3.96781 4.16957 4.52505 4.58424 4.62309 4.74005 4.77988 5.03325 5.17521 5.18832 5.31800 5.34756 5.37571 5.53565 5.64739 5.74289 5.88218 5.90298 6.05475 6.21753 6.22791 6.26653 6.35555 6.41275 6.43819 6.51336 6.55749 6.75723 6.80660 6.89296 6.91274 7.06368 7.09003 7.23760 7.28588 7.44367 7.84077 7.93250 8.39046 9.02035 9.68618 10.13888 11.14890 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009853 B = 0.006363 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.006365 B = 4399.293074 C = 6227.372755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.073 3.927 3 Si 0.900 3.100 4 H -0.255 1.255 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.283 4.283 8 H 0.062 0.938 9 N -0.527 5.527 10 C 0.337 3.663 11 N -0.347 5.347 12 N -0.269 5.269 13 C 0.235 3.765 14 C 0.167 3.833 15 O -0.559 6.559 16 N -0.466 5.466 17 C 0.051 3.949 18 C -0.190 4.190 19 C -0.168 4.168 20 C 0.460 3.540 21 S -0.583 6.583 22 C 0.162 3.838 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.117 4.117 26 C -0.129 4.129 27 H 0.263 0.737 28 H 0.159 0.841 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.388 0.612 33 H 0.135 0.865 34 H 0.092 0.908 35 H 0.166 0.834 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.044 0.956 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.347 -10.874 -11.054 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.180 1.180 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.411 4.411 8 H 0.080 0.920 9 N -0.241 5.241 10 C 0.132 3.868 11 N -0.148 5.148 12 N -0.093 5.093 13 C -0.045 4.045 14 C 0.086 3.914 15 O -0.364 6.364 16 N -0.168 5.168 17 C -0.052 4.052 18 C -0.230 4.230 19 C -0.207 4.207 20 C 0.099 3.901 21 S -0.452 6.452 22 C 0.055 3.945 23 C -0.163 4.163 24 C -0.160 4.160 25 C -0.154 4.154 26 C -0.168 4.168 27 H 0.073 0.927 28 H 0.176 0.824 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.237 0.763 33 H 0.153 0.847 34 H 0.110 0.890 35 H 0.183 0.817 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.584 -10.033 -9.455 14.244 hybrid contribution 1.043 -0.161 -1.281 1.660 sum 4.627 -10.194 -10.736 15.511 Atomic orbital electron populations 1.69732 1.06022 1.27478 1.48376 1.24868 0.94691 0.98693 0.94853 0.86381 0.79820 0.82593 0.78274 1.17998 1.21963 1.21997 1.18699 0.93901 0.84844 1.43685 0.92027 1.44615 1.47767 1.04757 1.26915 1.22807 0.88098 1.04906 0.71012 1.54376 1.42380 0.98661 1.19365 1.77029 1.17333 1.09607 1.05335 1.23858 0.99740 0.84647 0.96292 1.20178 0.85831 0.92648 0.92762 1.86604 1.31073 1.60139 1.58598 1.45551 1.46303 1.05001 1.19917 1.21828 1.02239 0.92424 0.88737 1.24732 1.01648 0.92767 1.03826 1.23310 0.92413 1.00966 1.04003 1.24296 0.86625 0.96759 0.82433 1.92847 1.79883 0.87914 1.84516 1.21288 0.93478 0.87710 0.91999 1.22677 0.96278 1.01742 0.95564 1.22441 0.96402 0.99044 0.98140 1.22246 0.96996 1.00456 0.95743 1.22519 0.98121 0.99891 0.96294 0.92715 0.82425 0.91462 0.89706 0.91049 0.76345 0.84743 0.89015 0.81690 0.87158 0.88412 0.92966 0.89083 0.93193 0.92764 0.92528 0.93297 0.91901 0.93677 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.13 11.35 55.49 0.63 -23.50 16 2 C 0.07 1.98 4.06 -17.43 -0.07 1.91 16 3 Si 0.90 23.24 28.35 -169.99 -4.82 18.42 16 4 H -0.26 -6.85 7.08 56.52 0.40 -6.45 16 5 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 7 C -0.28 -7.42 7.52 -15.06 -0.11 -7.54 16 8 H 0.06 1.70 7.44 -52.49 -0.39 1.31 16 9 N -0.53 -12.48 2.59 -168.08 -0.44 -12.92 16 10 C 0.34 7.87 6.38 -63.75 -0.41 7.46 16 11 N -0.35 -7.58 3.86 -65.18 -0.25 -7.83 16 12 N -0.27 -5.14 12.53 32.97 0.41 -4.73 16 13 C 0.23 3.79 7.61 -154.18 -1.17 2.62 16 14 C 0.17 1.68 7.34 36.01 0.26 1.94 16 15 O -0.56 -5.88 13.64 -35.23 -0.48 -6.36 16 16 N -0.47 -8.25 3.10 -107.51 -0.33 -8.59 16 17 C 0.05 0.73 6.64 -67.92 -0.45 0.28 16 18 C -0.19 -2.81 9.66 -26.69 -0.26 -3.07 16 19 C -0.17 -2.49 9.89 -26.69 -0.26 -2.75 16 20 C 0.46 10.04 7.68 -86.74 -0.67 9.37 16 21 S -0.58 -14.17 22.99 -107.50 -2.47 -16.64 16 22 C 0.16 3.34 3.42 -66.81 -0.23 3.11 16 23 C -0.12 -2.41 6.41 -25.03 -0.16 -2.57 16 24 C -0.12 -1.99 6.91 -24.70 -0.17 -2.16 16 25 C -0.12 -2.00 6.83 -25.07 -0.17 -2.17 16 26 C -0.13 -2.53 6.21 -25.62 -0.16 -2.68 16 27 H 0.26 7.23 8.32 -40.82 -0.34 6.89 16 28 H 0.16 4.15 5.00 -51.93 -0.26 3.89 16 29 H 0.07 1.48 7.90 -51.93 -0.41 1.07 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.49 7.16 -51.93 -0.37 0.12 16 32 H 0.39 1.69 9.12 45.56 0.42 2.10 16 33 H 0.14 1.36 7.16 -51.93 -0.37 0.99 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.17 3.11 4.35 -26.16 -0.11 2.99 16 36 H 0.11 2.07 7.55 -51.93 -0.39 1.68 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 1.06 7.80 -51.93 -0.41 0.65 16 39 H 0.09 2.06 6.89 -51.93 -0.36 1.70 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.06 1.48 7.26 -51.93 -0.38 1.11 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -32.54 375.50 -12.10 -44.64 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.98 Total: 8.09 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -4.03 Total: 3.75 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.02 Total: -57.56 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.48 Total: -6.36 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.82 Total: 18.42 kcal Atomic # 16 Polarization: -14.17 SS G_CDS: -2.47 Total: -16.64 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.54 -12.10 -44.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305716008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.985 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds