Wall clock time and date at job start Sat Apr 11 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99586 * 2 1 4 4 H 1.48498 * 109.47214 * 240.00333 * 3 2 1 5 5 H 1.48503 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47110 * 119.99729 * 3 2 1 7 7 C 1.38810 * 120.00544 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99689 * 199.55272 * 7 2 1 9 9 N 1.36937 * 119.99692 * 19.55015 * 7 2 1 10 10 C 1.46499 * 120.00297 * 37.58026 * 9 7 2 11 11 N 1.46503 * 109.47117 * 89.99107 * 10 9 7 12 12 N 1.40174 * 126.34573 * 89.97892 * 11 10 9 13 13 C 1.29425 * 108.13043 * 180.02562 * 12 11 10 14 14 C 1.50702 * 125.58129 * 179.97438 * 13 12 11 15 15 O 1.42892 * 109.46788 * 270.02184 * 14 13 12 16 16 N 1.37313 * 108.83311 * 359.97438 * 13 12 11 17 17 C 1.46503 * 125.82374 * 179.97438 * 16 13 12 18 18 C 1.53010 * 117.49411 * 161.69093 * 17 16 13 19 19 C 1.53000 * 117.49956 * 230.34913 * 17 16 13 20 20 C 1.34808 * 108.34498 * 0.26636 * 16 13 12 21 21 S 1.71203 * 126.30211 * 179.72714 * 20 16 13 22 22 C 1.46505 * 119.99772 * 217.57357 * 9 7 2 23 23 C 1.54265 * 110.03009 * 54.24576 * 22 9 7 24 24 C 1.54964 * 104.15934 * 217.13288 * 23 22 9 25 25 C 1.54886 * 102.77511 * 37.88999 * 24 23 22 26 26 C 1.53869 * 110.03559 * 297.02723 * 22 9 7 27 27 H 0.96994 * 120.00748 * 4.80653 * 1 2 3 28 28 H 1.09003 * 109.46801 * 329.99982 * 10 9 7 29 29 H 1.08991 * 109.47556 * 209.99845 * 10 9 7 30 30 H 1.08996 * 109.47005 * 30.02231 * 14 13 12 31 31 H 1.08996 * 109.47003 * 150.01983 * 14 13 12 32 32 H 0.96707 * 114.00000 * 180.02562 * 15 14 13 33 33 H 1.08996 * 115.54983 * 16.02626 * 17 16 13 34 34 H 1.08993 * 117.49751 * 215.00058 * 18 17 16 35 35 H 1.08999 * 117.49565 * 0.02770 * 18 17 16 36 36 H 1.08997 * 117.49735 * 359.97438 * 19 17 16 37 37 H 1.09001 * 117.49843 * 144.97646 * 19 17 16 38 38 H 1.08996 * 110.01195 * 175.63263 * 22 9 7 39 39 H 1.08997 * 110.49002 * 335.78401 * 23 22 9 40 40 H 1.09003 * 110.48552 * 98.42298 * 23 22 9 41 41 H 1.08999 * 110.71887 * 279.57429 * 24 23 22 42 42 H 1.09004 * 110.92120 * 156.30005 * 24 23 22 43 43 H 1.09001 * 110.48231 * 203.40369 * 25 24 23 44 44 H 1.09000 * 110.59925 * 80.81728 * 25 24 23 45 45 H 1.08997 * 110.03514 * 238.56721 * 26 22 9 46 46 H 1.09001 * 110.03218 * 359.95382 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0436 -1.2290 0.3125 9 7 1.3849 -2.3536 -0.3979 10 6 0.4289 -2.3226 -1.5075 11 7 1.1360 -2.5618 -2.7682 12 7 1.3674 -3.8077 -3.3674 13 6 2.0220 -3.6106 -4.4664 14 6 2.4759 -4.6845 -5.4213 15 8 3.7812 -5.1314 -5.0498 16 7 2.2351 -2.2628 -4.6198 17 6 2.9405 -1.6278 -5.7358 18 6 2.7117 -0.1310 -5.9560 19 6 4.0466 -0.6272 -5.3947 20 6 1.6901 -1.6243 -3.5650 21 16 1.6966 0.0653 -3.2890 22 6 1.6720 -3.6167 0.2866 23 6 1.4445 -3.4589 1.8042 24 6 2.5679 -4.3115 2.4465 25 6 3.7738 -4.0504 1.5103 26 6 3.1522 -3.9931 0.0996 27 1 -0.4851 0.8370 -0.0704 28 1 -0.0558 -1.3469 -1.5423 29 1 -0.3238 -3.0971 -1.3605 30 1 1.7802 -5.5227 -5.3827 31 1 2.5040 -4.2821 -6.4339 32 1 4.1377 -5.8242 -5.6227 33 1 3.0803 -2.2508 -6.6191 34 1 2.7011 0.2306 -6.9841 35 1 2.0368 0.3812 -5.2703 36 1 4.2492 -0.4412 -4.3400 37 1 4.9144 -0.5924 -6.0534 38 1 1.0331 -4.4075 -0.1065 39 1 1.5434 -2.4140 2.0982 40 1 0.4642 -3.8440 2.0851 41 1 2.2991 -5.3678 2.4449 42 1 2.7841 -3.9710 3.4592 43 1 4.4927 -4.8670 1.5776 44 1 4.2514 -3.1018 1.7556 45 1 3.2318 -4.9670 -0.3833 46 1 3.6568 -3.2364 -0.5010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305716008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:49 Heat of formation + Delta-G solvation = 80.666785 kcal Electronic energy + Delta-G solvation = -29144.634360 eV Core-core repulsion = 25391.694082 eV Total energy + Delta-G solvation = -3752.940278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.55821 -39.57582 -38.47252 -37.93704 -36.40435 -34.31864 -33.11788 -32.76025 -29.44573 -29.37484 -28.20122 -27.41940 -25.52475 -23.70079 -23.50441 -22.99879 -21.82032 -21.39736 -20.88101 -19.34095 -18.75692 -18.26283 -17.63111 -17.36815 -17.03643 -16.42393 -16.29963 -16.11372 -15.91879 -15.56910 -15.31145 -15.24340 -14.72763 -14.27331 -14.14538 -13.44110 -13.26240 -13.12433 -13.01047 -12.98738 -12.79857 -12.66729 -12.54595 -12.25588 -12.10625 -12.01224 -11.98125 -11.89985 -11.80167 -11.50746 -11.42418 -11.40537 -11.29768 -11.16071 -10.63956 -10.48066 -8.86829 -8.51078 -7.96844 -7.96446 -5.53792 0.23479 0.55565 0.64227 1.37921 1.47494 1.54232 1.65841 1.67500 2.54509 2.80773 3.06022 3.35836 3.39912 3.43894 3.57484 3.78694 3.82873 3.88559 3.91956 3.99740 4.13376 4.22913 4.29201 4.42840 4.56087 4.57234 4.66927 4.77227 4.80330 4.82305 4.83876 4.89651 5.07522 5.15189 5.15477 5.19692 5.23334 5.41033 5.42955 5.51113 5.62569 5.65159 5.72189 5.75729 6.30641 6.46741 6.85677 7.02141 7.69486 8.14350 9.04590 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009853 B = 0.006363 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.006365 B = 4399.293074 C = 6227.372755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.050 3.950 3 Si 0.928 3.072 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.287 1.287 7 C -0.268 4.268 8 H 0.040 0.960 9 N -0.542 5.542 10 C 0.351 3.649 11 N -0.360 5.360 12 N -0.292 5.292 13 C 0.253 3.747 14 C 0.168 3.832 15 O -0.584 6.584 16 N -0.461 5.461 17 C 0.053 3.947 18 C -0.194 4.194 19 C -0.170 4.170 20 C 0.457 3.543 21 S -0.652 6.652 22 C 0.158 3.842 23 C -0.122 4.122 24 C -0.109 4.109 25 C -0.113 4.113 26 C -0.119 4.119 27 H 0.254 0.746 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.416 0.584 33 H 0.195 0.805 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.060 0.940 37 H 0.138 0.862 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.044 0.956 45 H 0.059 0.941 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.612 -14.707 -13.546 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.152 4.152 3 Si 0.759 3.241 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.214 1.214 7 C -0.397 4.397 8 H 0.058 0.942 9 N -0.258 5.258 10 C 0.144 3.856 11 N -0.158 5.158 12 N -0.115 5.115 13 C -0.027 4.027 14 C 0.088 3.912 15 O -0.394 6.394 16 N -0.160 5.160 17 C -0.048 4.048 18 C -0.234 4.234 19 C -0.209 4.209 20 C 0.092 3.908 21 S -0.523 6.523 22 C 0.052 3.948 23 C -0.161 4.161 24 C -0.147 4.147 25 C -0.150 4.150 26 C -0.158 4.158 27 H 0.064 0.936 28 H 0.145 0.855 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.270 0.730 33 H 0.211 0.789 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.079 0.921 37 H 0.156 0.844 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.888 -13.914 -11.989 19.006 hybrid contribution 0.724 0.857 -0.759 1.355 sum 5.612 -13.057 -12.748 19.092 Atomic orbital electron populations 1.69806 1.06237 1.26776 1.50501 1.25020 0.94870 0.99415 0.95870 0.85956 0.78941 0.81900 0.77305 1.20246 1.22673 1.21391 1.18423 0.92723 0.85943 1.42596 0.94229 1.44575 1.48000 1.05043 1.28142 1.22217 0.88004 1.03781 0.71563 1.53459 1.42545 1.00194 1.19561 1.77037 1.19994 1.07346 1.07155 1.25309 0.96668 0.85074 0.95620 1.20591 0.86458 0.91699 0.92464 1.86517 1.30975 1.61626 1.60289 1.45794 1.45113 1.05709 1.19432 1.22540 1.00655 0.92895 0.88746 1.24488 1.00721 0.93287 1.04889 1.23255 0.93971 1.01698 1.01970 1.23784 0.87337 0.95740 0.83961 1.92961 1.82089 0.90840 1.86367 1.21461 0.94298 0.86460 0.92571 1.22586 0.98241 1.00234 0.94994 1.22394 0.94157 0.99918 0.98188 1.22224 0.97867 1.00734 0.94202 1.22383 0.97023 0.99021 0.97372 0.93600 0.85487 0.90314 0.87065 0.86468 0.72983 0.78859 0.85077 0.85821 0.92121 0.84396 0.92197 0.92854 0.92297 0.90008 0.91125 0.90303 0.93735 0.92263 0.95731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.82 11.35 21.65 0.25 -51.57 16 2 C 0.05 2.86 4.06 84.86 0.34 3.21 16 3 Si 0.93 50.46 28.35 68.60 1.94 52.40 16 4 H -0.28 -15.85 7.08 99.48 0.70 -15.15 16 5 H -0.30 -16.46 7.11 99.48 0.71 -15.75 16 6 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 7 C -0.27 -14.82 7.52 84.03 0.63 -14.19 16 8 H 0.04 2.34 7.44 -2.91 -0.02 2.32 16 9 N -0.54 -26.62 2.59 -685.67 -1.78 -28.39 16 10 C 0.35 16.95 6.38 170.96 1.09 18.04 16 11 N -0.36 -15.93 3.86 -360.13 -1.39 -17.32 16 12 N -0.29 -10.72 12.53 -49.61 -0.62 -11.34 16 13 C 0.25 7.40 7.61 137.70 1.05 8.45 16 14 C 0.17 2.43 7.34 71.24 0.52 2.95 16 15 O -0.58 -9.27 13.64 -148.98 -2.03 -11.31 16 16 N -0.46 -15.51 3.10 -494.04 -1.53 -17.04 16 17 C 0.05 1.32 6.64 44.99 0.30 1.62 16 18 C -0.19 -5.45 9.66 30.62 0.30 -5.16 16 19 C -0.17 -4.78 9.89 30.62 0.30 -4.47 16 20 C 0.46 20.34 7.68 178.99 1.37 21.72 16 21 S -0.65 -33.62 22.99 -56.49 -1.30 -34.92 16 22 C 0.16 6.53 3.42 45.71 0.16 6.69 16 23 C -0.12 -4.70 6.41 31.70 0.20 -4.49 16 24 C -0.11 -3.30 6.91 31.91 0.22 -3.07 16 25 C -0.11 -3.70 6.83 31.67 0.22 -3.48 16 26 C -0.12 -4.60 6.21 31.32 0.19 -4.40 16 27 H 0.25 14.83 8.32 -92.71 -0.77 14.06 16 28 H 0.13 7.06 5.00 -2.39 -0.01 7.05 16 29 H 0.08 3.54 7.90 -2.39 -0.02 3.52 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.12 0.71 7.16 -2.39 -0.02 0.69 16 32 H 0.42 1.28 9.12 -74.05 -0.68 0.61 16 33 H 0.19 2.55 7.16 -2.39 -0.02 2.54 16 34 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.12 4.79 4.35 -18.77 -0.08 4.71 16 36 H 0.06 2.36 7.55 -2.39 -0.02 2.34 16 37 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.06 2.37 7.80 -2.39 -0.02 2.35 16 39 H 0.05 2.47 6.89 -2.39 -0.02 2.46 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.02 1.13 7.26 -2.39 -0.02 1.11 16 Total: -1.00 -79.99 375.50 0.70 -79.29 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.26 Total: 16.79 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 6.90 Total: 23.40 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -5.07 Total: -125.66 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -2.03 Total: -11.31 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 1.94 Total: 52.40 kcal Atomic # 16 Polarization: -33.62 SS G_CDS: -1.30 Total: -34.92 kcal Total: -79.99 0.70 -79.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305716008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.956 kcal (2) G-P(sol) polarization free energy of solvation -79.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds