Wall clock time and date at job start Sat Apr 11 2020 05:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42100 * 109.46427 * 2 1 4 4 C 1.81398 * 102.99956 * 116.39211 * 2 1 3 5 5 C 1.50702 * 109.46754 * 180.02562 * 4 2 1 6 6 C 1.38234 * 120.00257 * 90.00202 * 5 4 2 7 7 C 1.38238 * 119.99675 * 180.25732 * 6 5 4 8 8 C 1.38228 * 120.00114 * 359.50218 * 7 6 5 9 9 C 1.50698 * 120.00195 * 180.26174 * 8 7 6 10 10 N 1.46499 * 109.47253 * 270.21239 * 9 8 7 11 11 C 1.34782 * 120.00065 * 179.97438 * 10 9 8 12 12 O 1.21588 * 119.99719 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99745 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99834 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47253 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46912 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46820 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00136 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99850 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99970 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99924 * 180.02562 * 19 17 16 22 22 H 1.48511 * 109.47112 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47377 * 119.99942 * 21 19 17 24 24 H 1.48502 * 109.47443 * 240.00258 * 21 19 17 25 25 C 1.38234 * 120.00051 * 0.47390 * 8 7 6 26 26 C 1.38235 * 119.99522 * 269.97214 * 5 4 2 27 27 H 1.08994 * 109.47094 * 303.60441 * 1 2 3 28 28 H 1.09003 * 109.47417 * 63.61065 * 1 2 3 29 29 H 1.09004 * 109.46871 * 183.60613 * 1 2 3 30 30 H 1.08993 * 109.47488 * 60.00166 * 4 2 1 31 31 H 1.08998 * 109.46846 * 299.99948 * 4 2 1 32 32 H 1.08002 * 119.99744 * 359.97115 * 6 5 4 33 33 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 34 34 H 1.09010 * 109.46956 * 30.21065 * 9 8 7 35 35 H 1.09000 * 109.47485 * 150.21108 * 9 8 7 36 36 H 0.97002 * 119.99989 * 359.97438 * 10 9 8 37 37 H 0.97002 * 120.00309 * 0.02562 * 13 11 10 38 38 H 1.09008 * 109.47145 * 300.00071 * 14 13 11 39 39 H 1.08995 * 109.47409 * 59.99782 * 14 13 11 40 40 H 1.08997 * 109.46725 * 299.99660 * 15 14 13 41 41 H 1.09004 * 109.47002 * 59.99521 * 15 14 13 42 42 H 1.08997 * 109.47358 * 299.99530 * 16 15 14 43 43 H 1.09004 * 109.47467 * 60.00064 * 16 15 14 44 44 H 0.97004 * 119.99487 * 179.97438 * 20 19 17 45 45 H 1.08001 * 120.00294 * 179.78842 * 25 8 7 46 46 H 1.07996 * 120.00471 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2221 -0.7857 1.5833 5 6 3.7195 -0.8606 1.7356 6 6 4.4058 0.1774 2.3378 7 6 5.7800 0.1109 2.4727 8 6 6.4666 -0.9979 2.0147 9 6 7.9640 -1.0730 2.1671 10 7 8.6049 -0.4876 0.9870 11 6 9.9494 -0.4444 0.9020 12 8 10.6302 -0.8909 1.8050 13 7 10.5389 0.0937 -0.1840 14 6 12.0003 0.1401 -0.2766 15 6 12.4070 0.7955 -1.5980 16 6 13.9331 0.8445 -1.6944 17 6 14.3337 1.4894 -2.9962 18 1 13.5755 1.8306 -3.6857 19 6 15.6680 1.6449 -3.3067 20 7 16.5912 1.2299 -2.4670 21 14 16.1646 2.4449 -4.9200 22 1 14.9464 2.8215 -5.6814 23 1 16.9697 3.6614 -4.6422 24 1 16.9723 1.4886 -5.7189 25 6 5.7803 -2.0361 1.4130 26 6 4.4067 -1.9675 1.2737 27 1 -0.3633 0.5687 0.8559 28 1 -0.3634 0.4568 -0.9206 29 1 -0.3633 -1.0257 0.0646 30 1 1.8032 -1.7916 1.6084 31 1 1.8032 -0.1972 2.3995 32 1 3.8689 1.0422 2.6986 33 1 6.3167 0.9238 2.9392 34 1 8.2668 -0.5205 3.0567 35 1 8.2674 -2.1152 2.2659 36 1 8.0617 -0.1311 0.2667 37 1 9.9957 0.4502 -0.9042 38 1 12.3988 0.7217 0.5548 39 1 12.3994 -0.8733 -0.2353 40 1 12.0085 0.2142 -2.4295 41 1 12.0078 1.8090 -1.6389 42 1 14.3312 1.4260 -0.8629 43 1 14.3326 -0.1689 -1.6534 44 1 17.5299 1.3390 -2.6856 45 1 6.3171 -2.9009 1.0521 46 1 3.8705 -2.7785 0.8033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344758915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:23:02 Heat of formation + Delta-G solvation = -89.708492 kcal Electronic energy + Delta-G solvation = -24915.320071 eV Core-core repulsion = 21122.699015 eV Total energy + Delta-G solvation = -3792.621056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15623 -40.27071 -37.14837 -36.81327 -36.12849 -35.17421 -33.77175 -32.76049 -31.87769 -29.98533 -29.39255 -28.21647 -25.75832 -24.59008 -23.69555 -22.28828 -21.89015 -21.82731 -19.38346 -18.54886 -18.44882 -17.53939 -17.03384 -16.96623 -16.52917 -16.48139 -16.27455 -16.09909 -15.64331 -15.42572 -15.36672 -15.11391 -14.96623 -14.34268 -14.26406 -13.97952 -13.79174 -13.71858 -13.58449 -13.51667 -13.37653 -13.17536 -12.76132 -12.66252 -12.53059 -12.32289 -12.15223 -11.89823 -11.68171 -11.65587 -11.44874 -11.28353 -11.12612 -10.54563 -10.40228 -9.87438 -9.76464 -9.74267 -9.04541 -8.18094 -6.29407 0.00334 0.46600 0.81273 1.42715 1.43000 1.56207 1.74709 1.82344 2.14604 2.43212 2.80195 2.91119 3.15736 3.42914 3.59628 3.77781 3.88597 4.09837 4.15923 4.19095 4.25651 4.29929 4.45744 4.52151 4.54790 4.58513 4.68085 4.77790 4.79497 4.98135 5.01466 5.07045 5.14498 5.16881 5.18898 5.41084 5.43826 5.49002 5.56408 5.58376 5.64639 5.73225 5.86121 6.00479 6.04004 6.24499 6.88013 7.10571 7.40086 7.57637 8.94204 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.001571 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.182866 B =17818.713058 C =19183.282761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.489 4.489 2 S 1.286 4.714 3 O -0.923 6.923 4 C -0.404 4.404 5 C -0.068 4.068 6 C -0.136 4.136 7 C -0.107 4.107 8 C -0.112 4.112 9 C 0.183 3.817 10 N -0.728 5.728 11 C 0.698 3.302 12 O -0.640 6.640 13 N -0.730 5.730 14 C 0.150 3.850 15 C -0.101 4.101 16 C 0.022 3.978 17 C -0.540 4.540 18 H 0.066 0.934 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.259 1.259 23 H -0.281 1.281 24 H -0.279 1.279 25 C -0.096 4.096 26 C -0.107 4.107 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.152 0.848 30 H 0.173 0.827 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.410 0.590 37 H 0.412 0.588 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.066 0.934 42 H -0.008 1.008 43 H -0.006 1.006 44 H 0.263 0.737 45 H 0.146 0.854 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.578 -10.672 5.460 41.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 1.487 4.513 3 O -0.919 6.919 4 C -0.539 4.539 5 C -0.070 4.070 6 C -0.156 4.156 7 C -0.126 4.126 8 C -0.113 4.113 9 C 0.060 3.940 10 N -0.385 5.385 11 C 0.398 3.602 12 O -0.522 6.522 13 N -0.386 5.386 14 C 0.025 3.975 15 C -0.139 4.139 16 C -0.015 4.015 17 C -0.578 4.578 18 H 0.085 0.915 19 C -0.201 4.201 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.182 1.182 23 H -0.207 1.207 24 H -0.205 1.205 25 C -0.115 4.115 26 C -0.126 4.126 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.170 0.830 30 H 0.191 0.809 31 H 0.104 0.896 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.246 0.754 37 H 0.248 0.752 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.010 0.990 43 H 0.012 0.988 44 H 0.072 0.928 45 H 0.164 0.836 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -38.205 -10.698 5.607 40.069 hybrid contribution -0.331 2.343 0.964 2.555 sum -38.536 -8.355 6.571 39.975 Atomic orbital electron populations 1.27657 1.19785 1.10452 1.06929 1.69922 0.86550 0.96612 0.98172 1.93051 1.76136 1.40086 1.82595 1.26739 0.96512 1.13234 1.17465 1.19420 0.94076 0.94860 0.98619 1.21158 0.94564 0.98977 1.00852 1.21112 0.94243 0.97713 0.99501 1.19791 0.93883 0.95946 1.01709 1.19980 0.87875 0.98986 0.87208 1.45020 1.03537 1.66097 1.23797 1.16154 0.82629 0.78900 0.82531 1.90893 1.64366 1.55569 1.41367 1.45039 1.07571 1.64875 1.21109 1.21079 0.78331 0.99977 0.98100 1.21591 0.97041 1.00278 0.94946 1.18955 0.91543 0.95343 0.95684 1.21719 0.92365 1.39127 1.04631 0.91535 1.26022 0.96885 0.96301 1.00904 1.70122 1.00825 1.48427 1.38116 0.85360 0.78508 0.77926 0.78984 1.18240 1.20682 1.20488 1.21405 0.94966 0.98209 0.96884 1.21496 0.93783 0.97962 0.99336 0.91415 0.87355 0.82982 0.80912 0.89569 0.87452 0.86297 0.92215 0.90764 0.75370 0.75204 0.93684 0.93289 0.91201 0.91553 0.98985 0.98760 0.92844 0.83614 0.80633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -1.25 10.74 113.37 1.22 -0.03 16 2 S 1.29 8.28 13.78 -56.49 -0.78 7.50 16 3 O -0.92 -21.82 18.14 -148.98 -2.70 -24.53 16 4 C -0.40 -1.95 6.05 71.24 0.43 -1.52 16 5 C -0.07 -0.75 5.14 -19.87 -0.10 -0.85 16 6 C -0.14 -2.32 9.70 22.27 0.22 -2.10 16 7 C -0.11 -1.88 9.70 22.27 0.22 -1.67 16 8 C -0.11 -1.77 5.25 -19.87 -0.10 -1.88 16 9 C 0.18 3.67 5.80 85.63 0.50 4.16 16 10 N -0.73 -15.85 5.55 -482.28 -2.68 -18.53 16 11 C 0.70 21.66 8.57 179.05 1.53 23.19 16 12 O -0.64 -26.06 16.34 -3.99 -0.07 -26.12 16 13 N -0.73 -21.22 5.56 -478.53 -2.66 -23.88 16 14 C 0.15 5.50 5.67 86.38 0.49 5.99 16 15 C -0.10 -3.95 5.27 30.59 0.16 -3.79 16 16 C 0.02 1.19 4.97 29.85 0.15 1.33 16 17 C -0.54 -30.48 9.11 25.60 0.23 -30.24 16 18 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 19 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 20 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 21 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 C -0.10 -1.05 9.70 22.27 0.22 -0.84 16 26 C -0.11 -0.77 9.70 22.27 0.22 -0.56 16 27 H 0.07 0.41 8.14 -2.39 -0.02 0.40 16 28 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.15 -0.78 8.14 -2.39 -0.02 -0.80 16 30 H 0.17 -0.74 8.09 -2.39 -0.02 -0.76 16 31 H 0.09 0.65 8.08 -2.39 -0.02 0.63 16 32 H 0.11 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.06 1.36 8.09 -2.38 -0.02 1.34 16 35 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 36 H 0.41 6.74 8.48 -92.71 -0.79 5.95 16 37 H 0.41 9.07 8.49 -92.71 -0.79 8.28 16 38 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 40 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 42 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 44 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 46 H 0.18 -0.30 8.06 -2.91 -0.02 -0.32 16 Total: -1.00 -90.44 405.22 -1.33 -91.77 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -0.59 Total: 13.37 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 5.83 Total: -8.54 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -5.05 Total: -99.66 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -2.77 Total: -50.65 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 8.28 SS G_CDS: -0.78 Total: 7.50 kcal Total: -90.44 -1.33 -91.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344758915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.061 kcal (2) G-P(sol) polarization free energy of solvation -90.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds