Wall clock time and date at job start Sat Apr 11 2020 05:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99977 * 2 1 4 4 H 1.48502 * 109.47271 * 180.27566 * 3 2 1 5 5 H 1.48499 * 109.46998 * 300.27539 * 3 2 1 6 6 H 1.48498 * 109.47262 * 60.27384 * 3 2 1 7 7 C 1.38818 * 120.00049 * 180.27227 * 2 1 3 8 8 H 1.07998 * 120.00161 * 179.72374 * 7 2 1 9 9 N 1.36936 * 119.99592 * 359.72616 * 7 2 1 10 10 C 1.46506 * 119.99452 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46799 * 174.90448 * 10 9 7 12 12 N 1.46508 * 110.01578 * 55.14428 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.17902 * 12 11 10 14 14 O 1.21278 * 120.00239 * 354.90004 * 13 12 11 15 15 C 1.50700 * 119.99626 * 174.90218 * 13 12 11 16 16 C 1.50706 * 109.47062 * 179.97438 * 15 13 12 17 17 C 1.38417 * 120.02521 * 269.72752 * 16 15 13 18 18 F 1.35097 * 120.01603 * 359.97438 * 17 16 15 19 19 C 1.38474 * 119.97160 * 179.70170 * 17 16 15 20 20 C 1.38208 * 120.02326 * 0.59365 * 19 17 16 21 21 C 1.38201 * 120.05458 * 359.68284 * 20 19 17 22 22 C 1.38415 * 120.02120 * 90.00516 * 16 15 13 23 23 F 1.35105 * 120.01638 * 359.97438 * 22 16 15 24 24 C 1.54258 * 110.03629 * 293.70293 * 11 10 9 25 25 C 1.54889 * 104.19983 * 217.10645 * 24 11 10 26 26 C 1.54888 * 102.74757 * 37.93901 * 25 24 11 27 27 C 1.53873 * 110.03292 * 176.53381 * 11 10 9 28 28 H 0.96995 * 120.00186 * 359.72784 * 1 2 3 29 29 H 0.96993 * 120.00354 * 359.97438 * 9 7 2 30 30 H 1.08992 * 109.47280 * 294.90644 * 10 9 7 31 31 H 1.09000 * 109.46837 * 54.91138 * 10 9 7 32 32 H 0.96993 * 120.00090 * 245.17366 * 12 11 10 33 33 H 1.08998 * 109.47639 * 299.99921 * 15 13 12 34 34 H 1.09007 * 109.47078 * 60.00065 * 15 13 12 35 35 H 1.07997 * 119.98935 * 180.32188 * 19 17 16 36 36 H 1.08004 * 119.97474 * 179.70524 * 20 19 17 37 37 H 1.08004 * 119.99096 * 179.97438 * 21 20 19 38 38 H 1.09007 * 110.48824 * 335.78729 * 24 11 10 39 39 H 1.09008 * 110.49110 * 98.42411 * 24 11 10 40 40 H 1.09004 * 110.75399 * 279.62546 * 25 24 11 41 41 H 1.08993 * 110.75933 * 156.25636 * 25 24 11 42 42 H 1.09001 * 110.49064 * 203.38245 * 26 25 24 43 43 H 1.09009 * 110.48457 * 80.73700 * 26 25 24 44 44 H 1.09000 * 110.03496 * 238.57153 * 27 11 10 45 45 H 1.09002 * 110.02892 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0067 5 1 1.8864 2.3993 -1.2091 6 1 1.8965 2.3936 1.2158 7 6 2.0103 -1.2022 -0.0057 8 1 3.0903 -1.2022 -0.0102 9 7 1.3255 -2.3880 -0.0057 10 6 2.0581 -3.6568 -0.0123 11 6 1.0694 -4.8172 0.1173 12 7 0.0564 -4.7331 -0.9378 13 6 0.4144 -4.8794 -2.2288 14 8 1.5855 -4.9881 -2.5248 15 6 -0.6405 -4.9078 -3.3047 16 6 0.0179 -5.0793 -4.6494 17 6 0.3973 -3.9676 -5.3817 18 9 0.1770 -2.7281 -4.8915 19 6 1.0078 -4.1266 -6.6144 20 6 1.2272 -5.3944 -7.1190 21 6 0.8437 -6.5049 -6.3914 22 6 0.2386 -6.3485 -5.1556 23 9 -0.1358 -7.4344 -4.4443 24 6 0.3938 -4.7836 1.5037 25 6 0.2540 -6.2758 1.8945 26 6 1.5690 -6.8942 1.3583 27 6 1.8165 -6.1591 0.0248 28 1 -0.4850 0.8400 0.0040 29 1 0.3556 -2.3881 -0.0013 30 1 2.6103 -3.7526 -0.9470 31 1 2.7552 -3.6782 0.8254 32 1 -0.8719 -4.5721 -0.7071 33 1 -1.3211 -5.7398 -3.1243 34 1 -1.1990 -3.9718 -3.2907 35 1 1.3086 -3.2595 -7.1836 36 1 1.6991 -5.5173 -8.0827 37 1 1.0154 -7.4952 -6.7869 38 1 1.0233 -4.2584 2.2222 39 1 -0.5871 -4.3127 1.4389 40 1 -0.6111 -6.7238 1.4054 41 1 0.1879 -6.3872 2.9767 42 1 1.4458 -7.9636 1.1873 43 1 2.3883 -6.7099 2.0533 44 1 1.4249 -6.7482 -0.8045 45 1 2.8836 -5.9837 -0.1119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698633986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:35 Heat of formation + Delta-G solvation = -95.829583 kcal Electronic energy + Delta-G solvation = -30467.526874 eV Core-core repulsion = 26120.800001 eV Total energy + Delta-G solvation = -4346.726873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -49.06778 -48.85566 -40.11243 -38.87989 -37.41906 -34.25373 -33.18928 -32.86622 -30.94266 -30.34470 -28.66920 -28.42682 -27.11539 -24.42614 -22.91785 -22.59298 -22.12157 -20.74230 -20.25748 -18.86352 -18.15671 -17.38071 -17.02793 -16.94339 -16.24461 -15.77077 -15.68997 -15.58014 -15.20177 -15.02039 -14.57141 -14.42542 -14.39394 -14.10872 -13.58687 -13.37263 -13.15076 -13.03211 -12.79659 -12.65163 -12.34294 -12.02206 -11.84369 -11.73932 -11.42066 -11.35540 -11.09112 -10.91756 -10.85103 -10.79572 -10.63266 -10.41275 -10.37279 -9.96048 -9.64510 -9.46780 -8.91196 -8.78984 -8.72958 -8.49396 -6.78839 -5.69186 -2.94801 0.89011 0.92932 3.06380 3.20610 3.47922 3.53965 3.56001 3.64836 3.86941 4.36242 4.36946 4.57638 4.64076 4.70463 4.75400 4.88822 5.04552 5.06465 5.21421 5.32322 5.44502 5.59133 5.63650 5.69338 5.70735 5.74682 5.82697 5.83228 5.86112 5.94471 5.98199 6.01445 6.04749 6.07542 6.24442 6.34260 6.45903 6.53853 6.58438 6.65006 6.69489 6.98605 7.19873 7.78920 7.94332 8.50658 8.67344 9.62195 10.20990 10.57131 11.54326 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008920 B = 0.004750 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.172172 B = 5893.596788 C = 8349.791862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.229 4.229 8 H 0.068 0.932 9 N -0.725 5.725 10 C 0.146 3.854 11 C 0.170 3.830 12 N -0.710 5.710 13 C 0.525 3.475 14 O -0.527 6.527 15 C -0.107 4.107 16 C -0.130 4.130 17 C 0.148 3.852 18 F -0.119 7.119 19 C -0.165 4.165 20 C -0.065 4.065 21 C -0.168 4.168 22 C 0.139 3.861 23 F -0.131 7.131 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.116 4.116 28 H 0.252 0.748 29 H 0.381 0.619 30 H 0.037 0.963 31 H 0.025 0.975 32 H 0.397 0.603 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 -16.871 -9.099 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.360 4.360 8 H 0.086 0.914 9 N -0.369 5.369 10 C 0.017 3.983 11 C 0.085 3.915 12 N -0.361 5.361 13 C 0.311 3.689 14 O -0.403 6.403 15 C -0.147 4.147 16 C -0.133 4.133 17 C 0.128 3.872 18 F -0.098 7.098 19 C -0.184 4.184 20 C -0.083 4.083 21 C -0.187 4.187 22 C 0.120 3.880 23 F -0.110 7.110 24 C -0.155 4.155 25 C -0.162 4.162 26 C -0.162 4.162 27 C -0.155 4.155 28 H 0.062 0.938 29 H 0.215 0.785 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.231 0.769 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.216 -16.839 -9.254 19.342 hybrid contribution -0.419 1.239 0.304 1.343 sum -2.634 -15.600 -8.950 18.177 Atomic orbital electron populations 1.69651 1.05004 1.25230 1.58684 1.24662 0.95495 0.97424 1.03523 0.86151 0.78857 0.84397 0.77070 1.20657 1.21998 1.22014 1.19283 0.91018 0.84254 1.41457 0.91394 1.42199 1.05632 0.99721 1.89376 1.21151 0.93044 0.85114 0.98963 1.21237 0.88692 0.95412 0.86199 1.45981 1.11278 1.73360 1.05469 1.20007 0.89585 0.76230 0.83119 1.90683 1.18751 1.48770 1.82073 1.20549 0.98224 1.05948 0.89956 1.19297 1.05086 0.91534 0.97349 1.17240 0.97765 0.79538 0.92656 1.91613 1.92004 1.38554 1.87587 1.21203 1.02398 0.99376 0.95451 1.20789 0.97212 0.90694 0.99599 1.21103 1.02647 1.00799 0.94172 1.17123 0.98293 0.81953 0.90668 1.91501 1.89003 1.52533 1.77931 1.22583 1.01390 0.96024 0.95485 1.22530 0.97558 0.95871 1.00279 1.22387 0.97736 0.99003 0.97074 1.22398 1.01068 0.94912 0.97123 0.93807 0.78504 0.94525 0.95752 0.76927 0.87600 0.86999 0.84015 0.84106 0.84231 0.89656 0.90990 0.91841 0.91692 0.92107 0.91621 0.91559 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.55 13.06 55.49 0.72 -27.82 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.90 23.20 29.55 -169.99 -5.02 18.17 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 7 C -0.23 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.80 5.27 -59.91 -0.32 -19.12 16 10 C 0.15 3.20 4.64 -4.04 -0.02 3.18 16 11 C 0.17 2.90 0.57 -130.70 -0.07 2.82 16 12 N -0.71 -11.49 4.50 -46.57 -0.21 -11.70 16 13 C 0.53 9.17 6.87 -10.99 -0.08 9.10 16 14 O -0.53 -10.99 13.30 5.56 0.07 -10.91 16 15 C -0.11 -1.51 5.48 -29.03 -0.16 -1.67 16 16 C -0.13 -1.89 4.38 -104.49 -0.46 -2.34 16 17 C 0.15 2.20 7.24 -39.43 -0.29 1.91 16 18 F -0.12 -2.10 16.47 2.25 0.04 -2.07 16 19 C -0.17 -1.93 10.03 -39.51 -0.40 -2.33 16 20 C -0.06 -0.61 10.04 -39.61 -0.40 -1.01 16 21 C -0.17 -1.74 10.03 -39.51 -0.40 -2.14 16 22 C 0.14 1.80 7.24 -39.43 -0.29 1.52 16 23 F -0.13 -1.72 16.48 2.25 0.04 -1.68 16 24 C -0.12 -1.76 5.74 -25.08 -0.14 -1.90 16 25 C -0.12 -1.49 6.91 -24.74 -0.17 -1.66 16 26 C -0.12 -1.53 6.83 -25.07 -0.17 -1.70 16 27 C -0.12 -1.78 5.22 -25.61 -0.13 -1.91 16 28 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.38 10.09 7.19 -40.82 -0.29 9.80 16 30 H 0.04 0.91 6.56 -51.93 -0.34 0.57 16 31 H 0.02 0.54 8.04 -51.93 -0.42 0.12 16 32 H 0.40 5.52 8.23 -40.82 -0.34 5.18 16 33 H 0.11 1.19 7.64 -51.93 -0.40 0.79 16 34 H 0.11 1.55 7.63 -51.93 -0.40 1.15 16 35 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.08 1.41 7.79 -51.92 -0.40 1.00 16 39 H 0.07 1.08 7.70 -51.92 -0.40 0.68 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 44 H 0.07 1.06 6.99 -51.93 -0.36 0.69 16 45 H 0.07 1.17 7.67 -51.93 -0.40 0.77 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -34.57 374.99 -8.69 -43.26 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.25 Total: 11.73 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -3.41 Total: -5.51 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.20 Total: -58.64 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.91 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.07 Total: -3.75 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.57 -8.69 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698633986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.568 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds