Wall clock time and date at job start Sat Apr 11 2020 05:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99977 * 2 1 4 4 H 1.48502 * 109.47271 * 180.27566 * 3 2 1 5 5 H 1.48499 * 109.46998 * 300.27539 * 3 2 1 6 6 H 1.48498 * 109.47262 * 60.27384 * 3 2 1 7 7 C 1.38818 * 120.00049 * 180.27227 * 2 1 3 8 8 H 1.07998 * 120.00161 * 179.72374 * 7 2 1 9 9 N 1.36936 * 119.99592 * 359.72616 * 7 2 1 10 10 C 1.46506 * 119.99452 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46799 * 174.90448 * 10 9 7 12 12 N 1.46508 * 110.01578 * 55.14428 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.17902 * 12 11 10 14 14 O 1.21278 * 120.00239 * 354.90004 * 13 12 11 15 15 C 1.50700 * 119.99626 * 174.90218 * 13 12 11 16 16 C 1.50706 * 109.47062 * 179.97438 * 15 13 12 17 17 C 1.38417 * 120.02521 * 269.72752 * 16 15 13 18 18 F 1.35097 * 120.01603 * 359.97438 * 17 16 15 19 19 C 1.38474 * 119.97160 * 179.70170 * 17 16 15 20 20 C 1.38208 * 120.02326 * 0.59365 * 19 17 16 21 21 C 1.38201 * 120.05458 * 359.68284 * 20 19 17 22 22 C 1.38415 * 120.02120 * 90.00516 * 16 15 13 23 23 F 1.35105 * 120.01638 * 359.97438 * 22 16 15 24 24 C 1.54258 * 110.03629 * 293.70293 * 11 10 9 25 25 C 1.54889 * 104.19983 * 217.10645 * 24 11 10 26 26 C 1.54888 * 102.74757 * 37.93901 * 25 24 11 27 27 C 1.53873 * 110.03292 * 176.53381 * 11 10 9 28 28 H 0.96995 * 120.00186 * 359.72784 * 1 2 3 29 29 H 0.96993 * 120.00354 * 359.97438 * 9 7 2 30 30 H 1.08992 * 109.47280 * 294.90644 * 10 9 7 31 31 H 1.09000 * 109.46837 * 54.91138 * 10 9 7 32 32 H 0.96993 * 120.00090 * 245.17366 * 12 11 10 33 33 H 1.08998 * 109.47639 * 299.99921 * 15 13 12 34 34 H 1.09007 * 109.47078 * 60.00065 * 15 13 12 35 35 H 1.07997 * 119.98935 * 180.32188 * 19 17 16 36 36 H 1.08004 * 119.97474 * 179.70524 * 20 19 17 37 37 H 1.08004 * 119.99096 * 179.97438 * 21 20 19 38 38 H 1.09007 * 110.48824 * 335.78729 * 24 11 10 39 39 H 1.09008 * 110.49110 * 98.42411 * 24 11 10 40 40 H 1.09004 * 110.75399 * 279.62546 * 25 24 11 41 41 H 1.08993 * 110.75933 * 156.25636 * 25 24 11 42 42 H 1.09001 * 110.49064 * 203.38245 * 26 25 24 43 43 H 1.09009 * 110.48457 * 80.73700 * 26 25 24 44 44 H 1.09000 * 110.03496 * 238.57153 * 27 11 10 45 45 H 1.09002 * 110.02892 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0067 5 1 1.8864 2.3993 -1.2091 6 1 1.8965 2.3936 1.2158 7 6 2.0103 -1.2022 -0.0057 8 1 3.0903 -1.2022 -0.0102 9 7 1.3255 -2.3880 -0.0057 10 6 2.0581 -3.6568 -0.0123 11 6 1.0694 -4.8172 0.1173 12 7 0.0564 -4.7331 -0.9378 13 6 0.4144 -4.8794 -2.2288 14 8 1.5855 -4.9881 -2.5248 15 6 -0.6405 -4.9078 -3.3047 16 6 0.0179 -5.0793 -4.6494 17 6 0.3973 -3.9676 -5.3817 18 9 0.1770 -2.7281 -4.8915 19 6 1.0078 -4.1266 -6.6144 20 6 1.2272 -5.3944 -7.1190 21 6 0.8437 -6.5049 -6.3914 22 6 0.2386 -6.3485 -5.1556 23 9 -0.1358 -7.4344 -4.4443 24 6 0.3938 -4.7836 1.5037 25 6 0.2540 -6.2758 1.8945 26 6 1.5690 -6.8942 1.3583 27 6 1.8165 -6.1591 0.0248 28 1 -0.4850 0.8400 0.0040 29 1 0.3556 -2.3881 -0.0013 30 1 2.6103 -3.7526 -0.9470 31 1 2.7552 -3.6782 0.8254 32 1 -0.8719 -4.5721 -0.7071 33 1 -1.3211 -5.7398 -3.1243 34 1 -1.1990 -3.9718 -3.2907 35 1 1.3086 -3.2595 -7.1836 36 1 1.6991 -5.5173 -8.0827 37 1 1.0154 -7.4952 -6.7869 38 1 1.0233 -4.2584 2.2222 39 1 -0.5871 -4.3127 1.4389 40 1 -0.6111 -6.7238 1.4054 41 1 0.1879 -6.3872 2.9767 42 1 1.4458 -7.9636 1.1873 43 1 2.3883 -6.7099 2.0533 44 1 1.4249 -6.7482 -0.8045 45 1 2.8836 -5.9837 -0.1119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698633986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:35 Heat of formation + Delta-G solvation = -117.518753 kcal Electronic energy + Delta-G solvation = -30468.467387 eV Core-core repulsion = 26120.800001 eV Total energy + Delta-G solvation = -4347.667386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.05961 -50.04076 -41.47095 -39.87477 -38.71011 -36.19198 -34.58027 -33.99874 -32.94924 -31.26166 -30.02962 -29.69595 -28.39324 -26.28036 -24.08019 -23.87643 -23.56006 -21.92721 -21.42517 -20.33472 -19.18897 -19.13796 -18.40967 -18.20783 -17.47778 -16.94478 -16.78172 -16.61827 -16.49240 -16.32646 -16.24719 -15.77555 -15.59826 -15.43573 -15.03916 -14.93688 -14.62004 -14.47183 -14.10195 -13.76667 -13.65473 -13.40484 -13.18534 -12.94560 -12.85751 -12.73102 -12.54543 -12.36307 -12.23433 -12.17673 -12.00322 -11.91846 -11.78222 -11.73763 -11.41400 -11.08851 -10.73117 -9.94995 -9.88138 -9.74538 -8.97238 -7.97377 -5.23677 -0.04173 -0.01710 1.41992 1.43456 1.53173 1.69049 2.15963 2.48178 2.53938 2.90679 3.34588 3.35425 3.42439 3.50361 3.63639 3.71091 3.85241 3.88343 4.00426 4.16508 4.21690 4.35029 4.38580 4.39343 4.51599 4.55793 4.68151 4.79710 4.81207 4.86043 4.88298 4.91071 5.02475 5.05461 5.08112 5.09257 5.18681 5.18960 5.24664 5.34079 5.44539 5.48508 5.73642 5.78525 6.25362 6.61908 7.32266 7.33273 8.06895 8.35965 9.25964 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008920 B = 0.004750 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.172172 B = 5893.596788 C = 8349.791862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.068 4.068 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.062 0.938 9 N -0.729 5.729 10 C 0.149 3.851 11 C 0.173 3.827 12 N -0.704 5.704 13 C 0.518 3.482 14 O -0.566 6.566 15 C -0.101 4.101 16 C -0.151 4.151 17 C 0.106 3.894 18 F -0.148 7.148 19 C -0.166 4.166 20 C -0.051 4.051 21 C -0.157 4.157 22 C 0.123 3.877 23 F -0.135 7.135 24 C -0.115 4.115 25 C -0.111 4.111 26 C -0.117 4.117 27 C -0.110 4.110 28 H 0.251 0.749 29 H 0.377 0.623 30 H 0.005 0.995 31 H 0.022 0.978 32 H 0.408 0.592 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.159 0.841 36 H 0.186 0.814 37 H 0.173 0.827 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.253 -18.644 -9.779 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.377 4.377 8 H 0.080 0.920 9 N -0.372 5.372 10 C 0.021 3.979 11 C 0.087 3.913 12 N -0.356 5.356 13 C 0.305 3.695 14 O -0.445 6.445 15 C -0.141 4.141 16 C -0.153 4.153 17 C 0.087 3.913 18 F -0.127 7.127 19 C -0.185 4.185 20 C -0.068 4.068 21 C -0.176 4.176 22 C 0.103 3.897 23 F -0.113 7.113 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.154 4.154 27 C -0.149 4.149 28 H 0.060 0.940 29 H 0.210 0.790 30 H 0.023 0.977 31 H 0.040 0.960 32 H 0.244 0.756 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.176 0.824 36 H 0.204 0.796 37 H 0.190 0.810 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.279 -18.635 -9.919 21.233 hybrid contribution -0.336 1.763 0.429 1.846 sum -2.615 -16.872 -9.490 19.533 Atomic orbital electron populations 1.69782 1.06205 1.25877 1.59459 1.25425 0.96444 1.00522 1.03635 0.85157 0.78042 0.80188 0.76903 1.19773 1.22086 1.21293 1.19573 0.91085 0.85760 1.41329 0.91975 1.42257 1.05463 1.00322 1.89108 1.21176 0.94035 0.85686 0.96997 1.21173 0.88299 0.94150 0.87709 1.45976 1.11723 1.72708 1.05200 1.20628 0.89793 0.75240 0.83878 1.90653 1.20524 1.50562 1.82713 1.20536 0.97536 1.06856 0.89174 1.19408 1.06121 0.92338 0.97436 1.17730 1.00325 0.78714 0.94528 1.91529 1.92624 1.40275 1.88230 1.21556 1.01281 1.01317 0.94297 1.21313 0.95581 0.89152 1.00792 1.21575 1.00475 1.02752 0.92783 1.17371 0.99250 0.81280 0.91790 1.91485 1.89179 1.52431 1.78253 1.22534 1.00567 0.98613 0.93550 1.22490 0.97837 0.92847 1.01711 1.22377 0.98191 0.99858 0.95014 1.22312 0.99527 0.94049 0.99012 0.93968 0.79017 0.97711 0.96017 0.75615 0.84776 0.87408 0.82378 0.79642 0.80955 0.91369 0.91039 0.90292 0.89620 0.89852 0.91090 0.92131 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.69 13.06 21.65 0.28 -59.41 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.97 48.31 29.55 68.60 2.03 50.34 16 4 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 7 C -0.25 -14.68 9.99 84.04 0.84 -13.84 16 8 H 0.06 3.71 7.83 -2.91 -0.02 3.68 16 9 N -0.73 -39.21 5.27 -343.44 -1.81 -41.02 16 10 C 0.15 6.85 4.64 86.38 0.40 7.25 16 11 C 0.17 5.99 0.57 4.32 0.00 6.00 16 12 N -0.70 -23.35 4.50 -419.65 -1.89 -25.24 16 13 C 0.52 18.75 6.87 87.66 0.60 19.36 16 14 O -0.57 -24.74 13.30 -3.02 -0.04 -24.78 16 15 C -0.10 -2.96 5.48 29.10 0.16 -2.80 16 16 C -0.15 -4.45 4.38 -19.78 -0.09 -4.53 16 17 C 0.11 3.27 7.24 22.37 0.16 3.43 16 18 F -0.15 -5.58 16.47 44.97 0.74 -4.84 16 19 C -0.17 -3.71 10.03 22.32 0.22 -3.49 16 20 C -0.05 -0.81 10.04 22.25 0.22 -0.59 16 21 C -0.16 -2.83 10.03 22.32 0.22 -2.61 16 22 C 0.12 3.07 7.24 22.37 0.16 3.23 16 23 F -0.13 -3.40 16.48 44.97 0.74 -2.66 16 24 C -0.11 -3.39 5.74 31.67 0.18 -3.21 16 25 C -0.11 -2.38 6.91 31.88 0.22 -2.16 16 26 C -0.12 -2.63 6.83 31.67 0.22 -2.42 16 27 C -0.11 -3.37 5.22 31.32 0.16 -3.21 16 28 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.38 20.66 7.19 -92.71 -0.67 20.00 16 30 H 0.00 0.26 6.56 -2.39 -0.02 0.25 16 31 H 0.02 1.01 8.04 -2.39 -0.02 0.99 16 32 H 0.41 11.47 8.23 -92.71 -0.76 10.71 16 33 H 0.13 2.99 7.64 -2.39 -0.02 2.97 16 34 H 0.11 3.18 7.63 -2.38 -0.02 3.16 16 35 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.19 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.07 2.25 7.79 -2.38 -0.02 2.23 16 39 H 0.07 2.11 7.70 -2.38 -0.02 2.09 16 40 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.06 1.92 6.99 -2.39 -0.02 1.91 16 45 H 0.05 1.80 7.67 -2.39 -0.02 1.78 16 Total: -1.00 -78.02 374.99 3.82 -74.20 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.39 Total: 36.58 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 4.16 Total: -3.17 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -3.42 Total: -125.67 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.04 Total: -24.78 kcal Atomic # 9 Polarization: -8.98 SS G_CDS: 1.48 Total: -7.50 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -78.02 3.82 -74.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698633986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.317 kcal (2) G-P(sol) polarization free energy of solvation -78.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds