Wall clock time and date at job start Sat Apr 11 2020 05:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00248 * 2 1 4 4 H 1.48498 * 109.46856 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47104 * 300.00290 * 3 2 1 6 6 H 1.48493 * 109.46843 * 60.00456 * 3 2 1 7 7 C 1.38820 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00212 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99863 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00205 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47235 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46960 * 294.99891 * 11 10 9 13 13 N 1.46501 * 109.47445 * 54.99668 * 11 10 9 14 14 C 1.34776 * 120.00060 * 206.51245 * 13 11 10 15 15 O 1.21590 * 119.99611 * 355.00413 * 14 13 11 16 16 C 1.47561 * 120.00104 * 175.00610 * 14 13 11 17 17 C 1.39733 * 120.14215 * 0.24850 * 16 14 13 18 18 C 1.37736 * 119.90499 * 180.27245 * 17 16 14 19 19 C 1.38761 * 120.19348 * 359.75322 * 18 17 16 20 20 F 1.35095 * 119.85839 * 180.02562 * 19 18 17 21 21 C 1.38491 * 120.28183 * 359.96931 * 19 18 17 22 22 C 1.38194 * 120.09419 * 0.02833 * 21 19 18 23 23 F 1.35102 * 120.09661 * 179.97438 * 22 21 19 24 24 C 1.52995 * 109.47195 * 175.00000 * 11 10 9 25 25 C 1.54267 * 110.03500 * 60.55777 * 24 11 10 26 26 C 1.54886 * 104.19955 * 217.10977 * 25 24 11 27 27 C 1.54888 * 102.75063 * 37.94212 * 26 25 24 28 28 C 1.53883 * 110.03159 * 303.39611 * 24 11 10 29 29 H 0.97004 * 119.99995 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99989 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46914 * 59.99194 * 10 9 7 32 32 H 1.09002 * 109.46539 * 299.99723 * 10 9 7 33 33 H 0.96999 * 120.00030 * 26.50606 * 13 11 10 34 34 H 1.07997 * 120.04873 * 0.02981 * 17 16 14 35 35 H 1.08006 * 119.90624 * 179.72757 * 18 17 16 36 36 H 1.07999 * 119.95095 * 180.02562 * 21 19 18 37 37 H 1.09001 * 110.02136 * 182.00727 * 24 11 10 38 38 H 1.09002 * 110.48314 * 335.79065 * 25 24 11 39 39 H 1.09000 * 110.48354 * 98.43074 * 25 24 11 40 40 H 1.08998 * 110.75525 * 279.63096 * 26 25 24 41 41 H 1.08992 * 110.91831 * 156.33071 * 26 25 24 42 42 H 1.08993 * 110.48945 * 203.38075 * 27 26 25 43 43 H 1.09001 * 110.59717 * 80.79058 * 27 26 25 44 44 H 1.08994 * 110.03207 * 238.57071 * 28 24 11 45 45 H 1.09004 * 110.02906 * 359.97438 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0636 -4.8197 0.0001 12 1 0.4978 -4.8134 0.9317 13 7 0.1436 -4.6763 -1.1309 14 6 -1.0919 -5.2111 -1.0667 15 8 -1.4117 -5.8893 -0.1095 16 6 -2.0564 -4.9735 -2.1579 17 6 -1.6902 -4.1989 -3.2617 18 6 -2.5962 -3.9756 -4.2749 19 6 -3.8698 -4.5219 -4.2051 20 9 -4.7529 -4.2990 -5.2028 21 6 -4.2392 -5.2956 -3.1174 22 6 -3.3396 -5.5272 -2.0943 23 9 -3.7000 -6.2815 -1.0330 24 6 1.8243 -6.1412 -0.1256 25 6 2.7874 -6.3122 1.0673 26 6 4.0385 -6.9867 0.4518 27 6 4.1557 -6.2944 -0.9288 28 6 2.6943 -6.1300 -1.3948 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.6847 -3.7146 0.8894 32 1 2.6845 -3.7146 -0.8906 33 1 0.4236 -4.1964 -1.9260 34 1 -0.6995 -3.7726 -3.3186 35 1 -2.3146 -3.3733 -5.1260 36 1 -5.2318 -5.7185 -3.0688 37 1 1.1220 -6.9741 -0.1618 38 1 3.0465 -5.3417 1.4905 39 1 2.3428 -6.9545 1.8274 40 1 3.8809 -8.0588 0.3341 41 1 4.9233 -6.7920 1.0578 42 1 4.7096 -6.9237 -1.6253 43 1 4.6365 -5.3212 -0.8302 44 1 2.4148 -6.9577 -2.0465 45 1 2.5742 -5.1831 -1.9214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699798238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:49 Heat of formation + Delta-G solvation = -98.051678 kcal Electronic energy + Delta-G solvation = -29783.381641 eV Core-core repulsion = 25436.558411 eV Total energy + Delta-G solvation = -4346.823230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.27209 -48.96995 -40.21331 -38.84653 -37.71836 -35.25205 -33.65598 -31.86155 -30.92203 -30.58128 -29.41383 -28.56221 -26.28307 -24.30532 -23.49496 -22.94287 -21.81349 -20.91580 -20.31638 -18.86039 -18.46449 -17.79384 -17.34391 -16.98075 -16.18603 -16.00206 -15.84109 -15.54000 -15.46310 -15.14539 -14.92120 -14.55178 -14.47930 -14.14715 -13.86313 -13.67227 -13.31693 -13.17447 -12.97441 -12.54426 -12.49056 -12.12353 -12.02488 -11.72426 -11.52715 -11.20797 -11.00666 -10.93102 -10.90685 -10.88899 -10.57029 -10.42058 -10.22544 -9.97278 -9.79313 -9.69774 -9.34833 -8.98217 -8.93629 -8.65639 -6.99285 -5.82416 -3.12248 0.40375 0.81118 2.68804 3.26106 3.38837 3.44944 3.47061 3.56769 3.62109 4.15883 4.32059 4.51817 4.58413 4.64155 4.73431 4.77959 4.87980 4.94806 5.32917 5.41150 5.48900 5.50439 5.52779 5.56875 5.62731 5.70309 5.75508 5.77793 5.80516 5.82470 5.87685 5.94807 6.03049 6.07774 6.17693 6.27663 6.29051 6.41710 6.47165 6.50459 6.55565 6.70963 6.90439 7.64592 7.73286 8.35093 8.40210 9.47283 10.02976 10.38203 11.39731 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007249 B = 0.004451 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3861.553419 B = 6288.602428 C = 9038.346047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.142 3.858 11 C 0.145 3.855 12 H 0.088 0.912 13 N -0.702 5.702 14 C 0.560 3.440 15 O -0.530 6.530 16 C -0.176 4.176 17 C -0.021 4.021 18 C -0.170 4.170 19 C 0.152 3.848 20 F -0.129 7.129 21 C -0.207 4.207 22 C 0.189 3.811 23 F -0.107 7.107 24 C -0.098 4.098 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.124 4.124 28 C -0.120 4.120 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.402 0.598 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 -13.886 -8.549 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.015 3.985 11 C 0.041 3.959 12 H 0.106 0.894 13 N -0.352 5.352 14 C 0.346 3.654 15 O -0.408 6.408 16 C -0.181 4.181 17 C -0.039 4.039 18 C -0.189 4.189 19 C 0.132 3.868 20 F -0.107 7.107 21 C -0.226 4.226 22 C 0.168 3.832 23 F -0.085 7.085 24 C -0.118 4.118 25 C -0.161 4.161 26 C -0.160 4.160 27 C -0.161 4.161 28 C -0.158 4.158 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.238 0.762 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.173 -14.246 -7.833 16.300 hybrid contribution -0.097 1.233 -0.389 1.296 sum -1.270 -13.013 -8.222 15.446 Atomic orbital electron populations 1.69673 1.05082 1.25590 1.57441 1.24740 0.95477 0.97662 1.02840 0.86147 0.78802 0.84191 0.77207 1.20557 1.21895 1.21872 1.19237 0.91018 0.84013 1.43012 0.91112 1.42384 1.05978 0.99782 1.89553 1.21101 0.93165 0.85051 0.99206 1.21298 0.90404 0.94638 0.89562 0.89360 1.45813 1.13227 1.55936 1.20238 1.17790 0.81926 0.80001 0.85682 1.90823 1.77938 1.38511 1.33542 1.20223 0.94727 1.04666 0.98446 1.21157 1.00004 0.92527 0.90240 1.21146 0.92177 1.03618 1.01961 1.17490 0.87467 0.96454 0.85392 1.91542 1.67707 1.92730 1.58731 1.20965 1.02060 1.05122 0.94477 1.17248 0.91505 0.90338 0.84129 1.91625 1.91520 1.72151 1.53170 1.22107 0.96901 0.97622 0.95142 1.22498 0.95044 1.01489 0.97045 1.22452 0.97868 0.99258 0.96406 1.22355 0.96665 1.00631 0.96484 1.22231 0.94505 1.01759 0.97266 0.93524 0.78080 0.94564 0.95205 0.76226 0.83185 0.83287 0.82924 0.90756 0.90347 0.91851 0.92026 0.91818 0.92298 0.91335 0.92543 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.19 13.06 55.49 0.72 -26.46 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.40 9.99 -15.06 -0.15 -6.55 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -17.28 5.43 -59.91 -0.33 -17.60 16 10 C 0.14 2.61 5.27 -4.04 -0.02 2.59 16 11 C 0.15 2.35 1.86 -67.93 -0.13 2.23 16 12 H 0.09 1.66 7.60 -51.93 -0.39 1.26 16 13 N -0.70 -10.78 4.00 -54.84 -0.22 -10.99 16 14 C 0.56 9.32 7.74 -12.46 -0.10 9.22 16 15 O -0.53 -10.49 15.03 5.29 0.08 -10.41 16 16 C -0.18 -2.50 5.88 -104.91 -0.62 -3.12 16 17 C -0.02 -0.24 9.53 -39.21 -0.37 -0.61 16 18 C -0.17 -1.75 10.01 -39.57 -0.40 -2.14 16 19 C 0.15 1.65 7.30 -39.29 -0.29 1.36 16 20 F -0.13 -1.39 17.26 2.25 0.04 -1.35 16 21 C -0.21 -2.32 9.99 -39.50 -0.39 -2.72 16 22 C 0.19 2.62 7.28 -38.98 -0.28 2.33 16 23 F -0.11 -1.69 15.55 2.25 0.04 -1.66 16 24 C -0.10 -1.32 2.96 -89.50 -0.26 -1.59 16 25 C -0.12 -1.53 6.19 -25.07 -0.16 -1.69 16 26 C -0.12 -1.31 6.91 -24.74 -0.17 -1.48 16 27 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 28 C -0.12 -1.43 5.62 -25.61 -0.14 -1.58 16 29 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.39 9.81 7.33 -40.82 -0.30 9.51 16 31 H 0.04 0.68 6.29 -51.93 -0.33 0.36 16 32 H 0.03 0.53 6.13 -51.93 -0.32 0.21 16 33 H 0.40 5.60 6.58 -40.82 -0.27 5.33 16 34 H 0.15 1.52 6.41 -52.49 -0.34 1.18 16 35 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.05 5.85 -51.93 -0.30 0.75 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.88 5.85 -51.93 -0.30 0.58 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -31.18 371.34 -8.75 -39.93 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.90 Total: 11.95 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -3.75 Total: -5.67 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.18 Total: -55.06 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.07 Total: -3.00 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.18 -8.75 -39.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699798238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.123 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds