Wall clock time and date at job start Sat Apr 11 2020 05:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00248 * 2 1 4 4 H 1.48498 * 109.46856 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47104 * 300.00290 * 3 2 1 6 6 H 1.48493 * 109.46843 * 60.00456 * 3 2 1 7 7 C 1.38820 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00212 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99863 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00205 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47235 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46960 * 294.99891 * 11 10 9 13 13 N 1.46501 * 109.47445 * 54.99668 * 11 10 9 14 14 C 1.34776 * 120.00060 * 206.51245 * 13 11 10 15 15 O 1.21590 * 119.99611 * 355.00413 * 14 13 11 16 16 C 1.47561 * 120.00104 * 175.00610 * 14 13 11 17 17 C 1.39733 * 120.14215 * 0.24850 * 16 14 13 18 18 C 1.37736 * 119.90499 * 180.27245 * 17 16 14 19 19 C 1.38761 * 120.19348 * 359.75322 * 18 17 16 20 20 F 1.35095 * 119.85839 * 180.02562 * 19 18 17 21 21 C 1.38491 * 120.28183 * 359.96931 * 19 18 17 22 22 C 1.38194 * 120.09419 * 0.02833 * 21 19 18 23 23 F 1.35102 * 120.09661 * 179.97438 * 22 21 19 24 24 C 1.52995 * 109.47195 * 175.00000 * 11 10 9 25 25 C 1.54267 * 110.03500 * 60.55777 * 24 11 10 26 26 C 1.54886 * 104.19955 * 217.10977 * 25 24 11 27 27 C 1.54888 * 102.75063 * 37.94212 * 26 25 24 28 28 C 1.53883 * 110.03159 * 303.39611 * 24 11 10 29 29 H 0.97004 * 119.99995 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99989 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46914 * 59.99194 * 10 9 7 32 32 H 1.09002 * 109.46539 * 299.99723 * 10 9 7 33 33 H 0.96999 * 120.00030 * 26.50606 * 13 11 10 34 34 H 1.07997 * 120.04873 * 0.02981 * 17 16 14 35 35 H 1.08006 * 119.90624 * 179.72757 * 18 17 16 36 36 H 1.07999 * 119.95095 * 180.02562 * 21 19 18 37 37 H 1.09001 * 110.02136 * 182.00727 * 24 11 10 38 38 H 1.09002 * 110.48314 * 335.79065 * 25 24 11 39 39 H 1.09000 * 110.48354 * 98.43074 * 25 24 11 40 40 H 1.08998 * 110.75525 * 279.63096 * 26 25 24 41 41 H 1.08992 * 110.91831 * 156.33071 * 26 25 24 42 42 H 1.08993 * 110.48945 * 203.38075 * 27 26 25 43 43 H 1.09001 * 110.59717 * 80.79058 * 27 26 25 44 44 H 1.08994 * 110.03207 * 238.57071 * 28 24 11 45 45 H 1.09004 * 110.02906 * 359.97438 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0636 -4.8197 0.0001 12 1 0.4978 -4.8134 0.9317 13 7 0.1436 -4.6763 -1.1309 14 6 -1.0919 -5.2111 -1.0667 15 8 -1.4117 -5.8893 -0.1095 16 6 -2.0564 -4.9735 -2.1579 17 6 -1.6902 -4.1989 -3.2617 18 6 -2.5962 -3.9756 -4.2749 19 6 -3.8698 -4.5219 -4.2051 20 9 -4.7529 -4.2990 -5.2028 21 6 -4.2392 -5.2956 -3.1174 22 6 -3.3396 -5.5272 -2.0943 23 9 -3.7000 -6.2815 -1.0330 24 6 1.8243 -6.1412 -0.1256 25 6 2.7874 -6.3122 1.0673 26 6 4.0385 -6.9867 0.4518 27 6 4.1557 -6.2944 -0.9288 28 6 2.6943 -6.1300 -1.3948 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.6847 -3.7146 0.8894 32 1 2.6845 -3.7146 -0.8906 33 1 0.4236 -4.1964 -1.9260 34 1 -0.6995 -3.7726 -3.3186 35 1 -2.3146 -3.3733 -5.1260 36 1 -5.2318 -5.7185 -3.0688 37 1 1.1220 -6.9741 -0.1618 38 1 3.0465 -5.3417 1.4905 39 1 2.3428 -6.9545 1.8274 40 1 3.8809 -8.0588 0.3341 41 1 4.9233 -6.7920 1.0578 42 1 4.7096 -6.9237 -1.6253 43 1 4.6365 -5.3212 -0.8302 44 1 2.4148 -6.9577 -2.0465 45 1 2.5742 -5.1831 -1.9214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699798238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:48 Heat of formation + Delta-G solvation = -115.674325 kcal Electronic energy + Delta-G solvation = -29784.145817 eV Core-core repulsion = 25436.558411 eV Total energy + Delta-G solvation = -4347.587405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.15214 -50.09223 -41.45182 -39.89637 -38.86175 -36.74787 -35.29334 -33.27437 -32.23760 -31.74243 -30.61360 -29.53339 -27.81549 -25.59053 -24.80906 -24.18960 -23.17363 -22.04506 -21.31792 -20.05418 -19.61431 -19.09907 -18.76057 -18.24275 -17.26498 -17.16093 -17.00273 -16.68628 -16.48632 -16.29137 -16.26051 -15.96517 -15.54208 -15.39874 -15.13065 -15.01929 -14.88089 -14.36209 -14.15187 -13.90889 -13.56779 -13.49644 -13.07151 -13.04593 -12.79550 -12.71265 -12.56464 -12.27509 -12.04102 -11.90557 -11.86589 -11.79177 -11.69528 -11.35196 -11.30919 -11.02073 -10.88001 -10.30031 -10.10919 -9.82859 -8.96752 -7.91636 -5.20814 -0.60727 -0.11498 1.49692 1.51314 1.58065 1.60331 2.03846 2.45008 2.57911 2.66553 3.18727 3.41758 3.42746 3.50114 3.64718 3.72899 3.76375 3.85981 3.99239 4.05317 4.21682 4.36181 4.52163 4.55193 4.58402 4.60353 4.72041 4.73110 4.78019 4.86995 4.88515 4.90219 4.93889 4.94084 5.09856 5.14806 5.19362 5.31220 5.32551 5.50265 5.54089 5.55073 5.57819 5.59636 6.28719 6.46430 7.12234 7.36579 8.09293 8.33464 9.31336 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007249 B = 0.004451 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3861.553419 B = 6288.602428 C = 9038.346047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.070 4.070 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.301 1.301 7 C -0.238 4.238 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.148 3.852 11 C 0.154 3.846 12 H 0.056 0.944 13 N -0.694 5.694 14 C 0.555 3.445 15 O -0.571 6.571 16 C -0.196 4.196 17 C -0.018 4.018 18 C -0.158 4.158 19 C 0.157 3.843 20 F -0.124 7.124 21 C -0.197 4.197 22 C 0.166 3.834 23 F -0.126 7.126 24 C -0.090 4.090 25 C -0.125 4.125 26 C -0.116 4.116 27 C -0.121 4.121 28 C -0.116 4.116 29 H 0.249 0.751 30 H 0.373 0.627 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.410 0.590 34 H 0.164 0.836 35 H 0.179 0.821 36 H 0.174 0.826 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 -13.988 -10.513 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.228 1.228 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.386 5.386 10 C 0.022 3.978 11 C 0.050 3.950 12 H 0.074 0.926 13 N -0.345 5.345 14 C 0.343 3.657 15 O -0.452 6.452 16 C -0.200 4.200 17 C -0.037 4.037 18 C -0.176 4.176 19 C 0.137 3.863 20 F -0.102 7.102 21 C -0.216 4.216 22 C 0.145 3.855 23 F -0.104 7.104 24 C -0.110 4.110 25 C -0.163 4.163 26 C -0.154 4.154 27 C -0.159 4.159 28 C -0.154 4.154 29 H 0.058 0.942 30 H 0.205 0.795 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.247 0.753 34 H 0.181 0.819 35 H 0.197 0.803 36 H 0.191 0.809 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.323 -14.369 -9.822 17.408 hybrid contribution -0.566 1.221 0.196 1.360 sum -0.243 -13.148 -9.626 16.297 Atomic orbital electron populations 1.69828 1.06567 1.25789 1.59559 1.25479 0.96208 1.00807 1.03810 0.85148 0.78407 0.80231 0.76400 1.18917 1.22020 1.22842 1.19622 0.91522 0.84963 1.40876 0.90303 1.42552 1.05605 1.00941 1.89459 1.21191 0.93299 0.83559 0.99763 1.21104 0.89883 0.95407 0.88648 0.92621 1.45730 1.12965 1.55622 1.20139 1.18213 0.82317 0.79274 0.85859 1.90791 1.78646 1.40448 1.35325 1.20159 0.94519 1.06533 0.98786 1.21297 1.00935 0.91835 0.89606 1.21445 0.91397 1.02694 1.02067 1.17538 0.87696 0.95925 0.85120 1.91563 1.67617 1.92596 1.58431 1.21109 1.02401 1.04526 0.93590 1.17510 0.92150 0.91201 0.84605 1.91572 1.91692 1.72852 1.54271 1.22016 0.96850 0.95208 0.96928 1.22509 0.95880 1.01221 0.96726 1.22440 0.97061 0.99622 0.96234 1.22355 0.95797 1.00819 0.96909 1.22205 0.94956 1.01983 0.96240 0.94209 0.79488 0.94473 0.93355 0.75285 0.81885 0.80348 0.80875 0.91997 0.91462 0.91825 0.90977 0.90698 0.90405 0.91848 0.91456 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.25 13.06 21.65 0.28 -56.96 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 3 Si 0.97 44.43 29.55 68.60 2.03 46.46 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 6 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 7 C -0.24 -12.47 9.99 84.04 0.84 -11.63 16 8 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -35.18 5.43 -343.44 -1.87 -37.05 16 10 C 0.15 5.39 5.27 86.38 0.45 5.84 16 11 C 0.15 5.11 1.86 44.99 0.08 5.20 16 12 H 0.06 2.22 7.60 -2.39 -0.02 2.20 16 13 N -0.69 -21.74 4.00 -445.68 -1.78 -23.52 16 14 C 0.56 19.23 7.74 86.70 0.67 19.90 16 15 O -0.57 -23.93 15.03 -4.00 -0.06 -23.99 16 16 C -0.20 -5.62 5.88 -20.05 -0.12 -5.74 16 17 C -0.02 -0.40 9.53 22.51 0.21 -0.18 16 18 C -0.16 -2.85 10.01 22.28 0.22 -2.62 16 19 C 0.16 3.06 7.30 22.46 0.16 3.23 16 20 F -0.12 -2.34 17.26 44.97 0.78 -1.56 16 21 C -0.20 -4.21 9.99 22.32 0.22 -3.99 16 22 C 0.17 4.67 7.28 22.66 0.17 4.83 16 23 F -0.13 -4.17 15.55 44.97 0.70 -3.47 16 24 C -0.09 -2.42 2.96 -10.07 -0.03 -2.45 16 25 C -0.13 -3.06 6.19 31.67 0.20 -2.87 16 26 C -0.12 -2.24 6.91 31.88 0.22 -2.02 16 27 C -0.12 -2.35 6.83 31.67 0.22 -2.13 16 28 C -0.12 -2.58 5.62 31.32 0.18 -2.40 16 29 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.37 19.41 7.33 -92.71 -0.68 18.73 16 31 H 0.04 1.38 6.29 -2.39 -0.02 1.37 16 32 H 0.05 1.63 6.13 -2.39 -0.01 1.61 16 33 H 0.41 11.33 6.58 -92.71 -0.61 10.72 16 34 H 0.16 3.06 6.41 -2.91 -0.02 3.04 16 35 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 1.79 5.85 -2.39 -0.01 1.77 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.07 1.53 5.85 -2.39 -0.01 1.51 16 Total: -1.00 -68.02 371.34 4.00 -64.02 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -0.24 Total: 36.51 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 4.17 Total: -0.43 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -3.37 Total: -117.54 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.06 Total: -23.99 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 1.48 Total: -5.03 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.02 4.00 -64.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699798238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.656 kcal (2) G-P(sol) polarization free energy of solvation -68.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds