Wall clock time and date at job start Sat Apr 11 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46828 * 300.00073 * 3 2 1 6 6 H 1.48499 * 109.47147 * 59.99852 * 3 2 1 7 7 C 1.38815 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99544 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99792 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99686 * 173.93789 * 9 7 2 11 11 C 1.52996 * 112.85076 * 294.82257 * 10 9 7 12 12 N 1.46502 * 109.46958 * 294.03211 * 11 10 9 13 13 C 1.34782 * 119.99830 * 176.08816 * 12 11 10 14 14 O 1.21279 * 119.99941 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99706 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.46981 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47352 * 180.02562 * 16 15 13 18 18 C 1.38234 * 119.98831 * 265.23565 * 17 16 15 19 19 C 1.38187 * 120.04484 * 180.22897 * 18 17 16 20 20 C 1.38488 * 120.03173 * 359.79281 * 19 18 17 21 21 F 1.35098 * 120.01429 * 180.02562 * 20 19 18 22 22 C 1.38396 * 119.97278 * 359.97257 * 20 19 18 23 23 C 1.38444 * 119.95170 * 0.02562 * 22 20 19 24 24 F 1.35101 * 120.01596 * 179.97438 * 23 22 20 25 25 C 1.53787 * 113.61246 * 66.01886 * 10 9 7 26 26 C 1.53953 * 87.01905 * 89.22944 * 25 10 9 27 27 C 1.53783 * 113.61217 * 163.62538 * 10 9 7 28 28 H 0.96993 * 120.00101 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00355 * 353.93585 * 9 7 2 30 30 H 1.08995 * 109.47122 * 174.03418 * 11 10 9 31 31 H 1.09000 * 109.47249 * 54.03206 * 11 10 9 32 32 H 0.96997 * 120.00348 * 356.09557 * 12 11 10 33 33 H 1.09002 * 109.46942 * 60.00296 * 15 13 12 34 34 H 1.08998 * 109.47567 * 300.00552 * 15 13 12 35 35 H 1.09002 * 109.47116 * 60.00310 * 16 15 13 36 36 H 1.09001 * 109.47475 * 300.00081 * 16 15 13 37 37 H 1.07990 * 119.97285 * 359.97420 * 18 17 16 38 38 H 1.08000 * 119.98238 * 179.76806 * 19 18 17 39 39 H 1.08000 * 120.02934 * 180.02562 * 22 20 19 40 40 H 1.09001 * 113.60761 * 203.74579 * 25 10 9 41 41 H 1.08991 * 113.61391 * 334.64793 * 25 10 9 42 42 H 1.08998 * 113.53575 * 270.80845 * 26 25 10 43 43 H 1.08994 * 113.66927 * 139.93218 * 26 25 10 44 44 H 1.08996 * 113.61323 * 25.34914 * 27 10 9 45 45 H 1.09004 * 113.61090 * 156.25424 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0519 -3.6533 -0.1318 11 6 2.7401 -3.8030 -1.4901 12 7 1.7263 -3.8932 -2.5438 13 6 2.1018 -3.9509 -3.8370 14 8 3.2789 -3.9287 -4.1282 15 6 1.0589 -4.0431 -4.9209 16 6 1.7463 -4.0954 -6.2868 17 6 0.7035 -4.1870 -7.3708 18 6 0.3347 -5.4212 -7.8723 19 6 -0.6180 -5.5063 -8.8696 20 6 -1.2075 -4.3552 -9.3650 21 9 -2.1392 -4.4387 -10.3397 22 6 -0.8425 -3.1193 -8.8603 23 6 0.1120 -3.0351 -7.8611 24 9 0.4696 -1.8293 -7.3678 25 6 2.9702 -3.9653 1.0617 26 6 1.7610 -4.6682 1.7051 27 6 1.2263 -4.8839 0.2794 28 1 -0.4850 0.8400 -0.0004 29 1 0.3597 -2.3904 0.0907 30 1 3.3475 -4.7080 -1.4918 31 1 3.3772 -2.9374 -1.6719 32 1 0.7849 -3.9113 -2.3109 33 1 0.4083 -3.1698 -4.8744 34 1 0.4655 -4.9462 -4.7784 35 1 2.3967 -4.9689 -6.3331 36 1 2.3400 -3.1925 -6.4296 37 1 0.7944 -6.3193 -7.4871 38 1 -0.9027 -6.4708 -9.2633 39 1 -1.3020 -2.2210 -9.2457 40 1 3.7892 -4.6417 0.8173 41 1 3.2995 -3.0783 1.6027 42 1 1.1415 -4.0042 2.3079 43 1 2.0163 -5.5941 2.2203 44 1 0.1500 -4.7373 0.1898 45 1 1.5678 -5.8119 -0.1793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700141809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:56 Heat of formation + Delta-G solvation = -81.882059 kcal Electronic energy + Delta-G solvation = -28640.163308 eV Core-core repulsion = 24294.041245 eV Total energy + Delta-G solvation = -4346.122063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.30133 -49.16429 -39.73183 -39.19222 -38.39475 -34.13932 -33.80620 -33.26719 -31.17378 -30.16440 -29.67472 -27.24172 -25.31872 -24.67781 -23.70247 -23.49258 -21.93169 -21.35250 -19.91144 -18.46904 -18.23608 -17.52979 -17.16526 -17.00201 -16.22372 -16.10852 -15.74180 -15.52419 -15.35908 -15.32552 -14.96049 -14.66432 -14.37476 -14.19684 -13.95037 -13.62721 -13.27167 -13.19762 -12.89313 -12.72263 -12.51808 -12.07513 -11.96064 -11.80610 -11.74322 -11.59273 -11.24646 -11.05549 -11.02565 -10.86257 -10.37971 -10.22124 -10.11021 -9.74946 -9.57216 -9.46325 -9.37948 -8.92620 -8.83673 -8.48764 -7.05271 -5.83951 -3.13559 0.61696 0.68074 3.00203 3.03247 3.40742 3.48245 3.49131 3.57129 3.64349 4.11751 4.25514 4.40293 4.51877 4.53715 4.78968 4.95525 5.09081 5.16467 5.16573 5.25390 5.30407 5.42413 5.45866 5.49146 5.52403 5.57488 5.65670 5.66331 5.75077 5.77458 6.03239 6.04963 6.08588 6.10765 6.17178 6.30127 6.37333 6.45532 6.53372 6.70413 6.89014 6.96580 7.06169 7.69437 7.99094 8.34828 8.65045 9.46349 9.99632 10.34775 11.38122 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.002687 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.199025 B =10419.201356 C =11787.202673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.071 0.929 9 N -0.699 5.699 10 C 0.174 3.826 11 C 0.120 3.880 12 N -0.704 5.704 13 C 0.510 3.490 14 O -0.555 6.555 15 C -0.136 4.136 16 C -0.063 4.063 17 C -0.122 4.122 18 C -0.059 4.059 19 C -0.163 4.163 20 C 0.122 3.878 21 F -0.134 7.134 22 C -0.191 4.191 23 C 0.135 3.865 24 F -0.123 7.123 25 C -0.151 4.151 26 C -0.129 4.129 27 C -0.145 4.145 28 H 0.255 0.745 29 H 0.386 0.614 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.400 0.600 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 -14.290 -14.067 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.089 0.911 9 N -0.340 5.340 10 C 0.081 3.919 11 C -0.006 4.006 12 N -0.353 5.353 13 C 0.296 3.704 14 O -0.434 6.434 15 C -0.177 4.177 16 C -0.101 4.101 17 C -0.123 4.123 18 C -0.077 4.077 19 C -0.182 4.182 20 C 0.103 3.897 21 F -0.112 7.112 22 C -0.210 4.210 23 C 0.116 3.884 24 F -0.102 7.102 25 C -0.192 4.192 26 C -0.166 4.166 27 C -0.183 4.183 28 H 0.064 0.936 29 H 0.221 0.779 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.166 0.834 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.376 -14.053 -14.280 20.082 hybrid contribution -0.556 1.368 0.015 1.477 sum -1.932 -12.684 -14.265 19.186 Atomic orbital electron populations 1.69656 1.05057 1.25629 1.57506 1.24720 0.95472 0.97632 1.02650 0.86169 0.78998 0.84215 0.77152 1.20474 1.21852 1.21898 1.19136 0.91078 0.83607 1.42694 0.91118 1.42063 1.06058 0.99042 1.86826 1.20817 0.92961 0.87411 0.90737 1.21841 0.90702 1.00449 0.87630 1.45763 1.10911 1.73138 1.05502 1.20436 0.89795 0.76407 0.83756 1.90664 1.18900 1.50994 1.82878 1.21627 0.98371 1.04643 0.93016 1.20273 0.94813 1.05295 0.89718 1.20136 1.00085 0.91994 1.00100 1.20842 0.95272 0.97094 0.94457 1.21200 0.99333 0.97993 0.99636 1.17297 0.89914 0.93682 0.88852 1.91528 1.62823 1.97053 1.59833 1.21057 1.01347 0.98544 1.00089 1.17223 0.95821 0.80875 0.94526 1.91580 1.90289 1.42152 1.86141 1.23343 0.96348 1.00372 0.99095 1.22661 0.98537 0.99510 0.95893 1.23146 0.99888 0.97834 0.97384 0.93556 0.77946 0.92993 0.91274 0.76603 0.88691 0.88944 0.89376 0.89490 0.83732 0.84027 0.83425 0.91346 0.90718 0.90054 0.92745 0.91677 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.86 13.07 55.49 0.73 -26.14 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.23 -6.13 9.06 -15.06 -0.14 -6.26 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.70 -15.85 5.18 -46.48 -0.24 -16.10 16 10 C 0.17 3.13 0.80 -131.00 -0.10 3.02 16 11 C 0.12 2.16 5.03 -4.04 -0.02 2.14 16 12 N -0.70 -11.52 5.45 -60.30 -0.33 -11.85 16 13 C 0.51 8.27 7.83 -10.98 -0.09 8.18 16 14 O -0.56 -10.85 15.98 5.56 0.09 -10.76 16 15 C -0.14 -1.64 5.68 -27.88 -0.16 -1.80 16 16 C -0.06 -0.72 4.41 -27.89 -0.12 -0.84 16 17 C -0.12 -1.21 5.14 -104.54 -0.54 -1.74 16 18 C -0.06 -0.45 9.68 -39.60 -0.38 -0.83 16 19 C -0.16 -1.22 10.02 -39.51 -0.40 -1.62 16 20 C 0.12 1.11 7.30 -39.43 -0.29 0.82 16 21 F -0.13 -1.29 17.27 2.25 0.04 -1.25 16 22 C -0.19 -1.84 10.01 -39.45 -0.39 -2.24 16 23 C 0.14 1.48 7.24 -39.43 -0.29 1.20 16 24 F -0.12 -1.61 16.56 2.25 0.04 -1.57 16 25 C -0.15 -2.54 7.29 -25.82 -0.19 -2.73 16 26 C -0.13 -1.95 8.00 -25.83 -0.21 -2.15 16 27 C -0.14 -2.13 7.08 -25.92 -0.18 -2.32 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.39 9.34 7.87 -40.82 -0.32 9.02 16 30 H 0.05 0.87 8.06 -51.93 -0.42 0.45 16 31 H 0.07 1.48 7.85 -51.93 -0.41 1.07 16 32 H 0.40 6.06 8.30 -40.82 -0.34 5.72 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.93 8.01 -51.93 -0.42 0.51 16 36 H 0.09 1.16 7.74 -51.93 -0.40 0.75 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 41 H 0.07 1.42 7.86 -51.93 -0.41 1.01 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 45 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 387.26 15.07 5.84 5.84 Total: -1.00 -30.78 387.26 -8.93 -39.71 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -6.48 Total: 12.43 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -3.59 Total: -7.50 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.16 Total: -54.09 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.08 Total: -2.82 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.78 -8.93 -39.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700141809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.168 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds