Wall clock time and date at job start Sat Apr 11 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46828 * 300.00073 * 3 2 1 6 6 H 1.48499 * 109.47147 * 59.99852 * 3 2 1 7 7 C 1.38815 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99544 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99792 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99686 * 173.93789 * 9 7 2 11 11 C 1.52996 * 112.85076 * 294.82257 * 10 9 7 12 12 N 1.46502 * 109.46958 * 294.03211 * 11 10 9 13 13 C 1.34782 * 119.99830 * 176.08816 * 12 11 10 14 14 O 1.21279 * 119.99941 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99706 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.46981 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47352 * 180.02562 * 16 15 13 18 18 C 1.38234 * 119.98831 * 265.23565 * 17 16 15 19 19 C 1.38187 * 120.04484 * 180.22897 * 18 17 16 20 20 C 1.38488 * 120.03173 * 359.79281 * 19 18 17 21 21 F 1.35098 * 120.01429 * 180.02562 * 20 19 18 22 22 C 1.38396 * 119.97278 * 359.97257 * 20 19 18 23 23 C 1.38444 * 119.95170 * 0.02562 * 22 20 19 24 24 F 1.35101 * 120.01596 * 179.97438 * 23 22 20 25 25 C 1.53787 * 113.61246 * 66.01886 * 10 9 7 26 26 C 1.53953 * 87.01905 * 89.22944 * 25 10 9 27 27 C 1.53783 * 113.61217 * 163.62538 * 10 9 7 28 28 H 0.96993 * 120.00101 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00355 * 353.93585 * 9 7 2 30 30 H 1.08995 * 109.47122 * 174.03418 * 11 10 9 31 31 H 1.09000 * 109.47249 * 54.03206 * 11 10 9 32 32 H 0.96997 * 120.00348 * 356.09557 * 12 11 10 33 33 H 1.09002 * 109.46942 * 60.00296 * 15 13 12 34 34 H 1.08998 * 109.47567 * 300.00552 * 15 13 12 35 35 H 1.09002 * 109.47116 * 60.00310 * 16 15 13 36 36 H 1.09001 * 109.47475 * 300.00081 * 16 15 13 37 37 H 1.07990 * 119.97285 * 359.97420 * 18 17 16 38 38 H 1.08000 * 119.98238 * 179.76806 * 19 18 17 39 39 H 1.08000 * 120.02934 * 180.02562 * 22 20 19 40 40 H 1.09001 * 113.60761 * 203.74579 * 25 10 9 41 41 H 1.08991 * 113.61391 * 334.64793 * 25 10 9 42 42 H 1.08998 * 113.53575 * 270.80845 * 26 25 10 43 43 H 1.08994 * 113.66927 * 139.93218 * 26 25 10 44 44 H 1.08996 * 113.61323 * 25.34914 * 27 10 9 45 45 H 1.09004 * 113.61090 * 156.25424 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0519 -3.6533 -0.1318 11 6 2.7401 -3.8030 -1.4901 12 7 1.7263 -3.8932 -2.5438 13 6 2.1018 -3.9509 -3.8370 14 8 3.2789 -3.9287 -4.1282 15 6 1.0589 -4.0431 -4.9209 16 6 1.7463 -4.0954 -6.2868 17 6 0.7035 -4.1870 -7.3708 18 6 0.3347 -5.4212 -7.8723 19 6 -0.6180 -5.5063 -8.8696 20 6 -1.2075 -4.3552 -9.3650 21 9 -2.1392 -4.4387 -10.3397 22 6 -0.8425 -3.1193 -8.8603 23 6 0.1120 -3.0351 -7.8611 24 9 0.4696 -1.8293 -7.3678 25 6 2.9702 -3.9653 1.0617 26 6 1.7610 -4.6682 1.7051 27 6 1.2263 -4.8839 0.2794 28 1 -0.4850 0.8400 -0.0004 29 1 0.3597 -2.3904 0.0907 30 1 3.3475 -4.7080 -1.4918 31 1 3.3772 -2.9374 -1.6719 32 1 0.7849 -3.9113 -2.3109 33 1 0.4083 -3.1698 -4.8744 34 1 0.4655 -4.9462 -4.7784 35 1 2.3967 -4.9689 -6.3331 36 1 2.3400 -3.1925 -6.4296 37 1 0.7944 -6.3193 -7.4871 38 1 -0.9027 -6.4708 -9.2633 39 1 -1.3020 -2.2210 -9.2457 40 1 3.7892 -4.6417 0.8173 41 1 3.2995 -3.0783 1.6027 42 1 1.1415 -4.0042 2.3079 43 1 2.0163 -5.5941 2.2203 44 1 0.1500 -4.7373 0.1898 45 1 1.5678 -5.8119 -0.1793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700141809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:56 Heat of formation + Delta-G solvation = -99.907894 kcal Electronic energy + Delta-G solvation = -28640.944967 eV Core-core repulsion = 24294.041245 eV Total energy + Delta-G solvation = -4346.903722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.06397 -50.01175 -40.99429 -40.13449 -39.63813 -35.31163 -35.19028 -34.93268 -31.95517 -31.83983 -30.71245 -28.57684 -26.71110 -25.95018 -25.25517 -24.19343 -23.11934 -22.34051 -21.18826 -19.70307 -19.22043 -19.11329 -18.29613 -18.21766 -17.14145 -16.99063 -16.86659 -16.61951 -16.45476 -16.35126 -16.22467 -15.92737 -15.62402 -15.41675 -15.09403 -14.83710 -14.76615 -14.43158 -14.12869 -13.74876 -13.59707 -13.40861 -13.06274 -12.97856 -12.94312 -12.73127 -12.58805 -12.51466 -12.39757 -12.15334 -11.97710 -11.94556 -11.59241 -11.47665 -11.02831 -10.85889 -10.69150 -10.07803 -9.90435 -9.62476 -8.97880 -7.95372 -5.21317 -0.10180 0.00446 1.41763 1.44861 1.51892 1.73332 2.26336 2.45620 2.53825 2.85667 3.36871 3.40193 3.55389 3.59061 3.76013 3.83068 3.88263 3.95007 4.00638 4.08400 4.09931 4.19748 4.26838 4.29609 4.60844 4.70627 4.71849 4.83274 4.85729 4.91819 4.92783 4.93770 4.94820 5.03612 5.06798 5.14574 5.15069 5.30470 5.32940 5.43482 5.54546 5.65952 5.73204 5.76522 6.29659 6.69170 7.35294 7.36186 8.10560 8.33643 9.27171 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.002687 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.199025 B =10419.201356 C =11787.202673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.066 4.066 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.292 1.292 7 C -0.218 4.218 8 H 0.064 0.936 9 N -0.705 5.705 10 C 0.157 3.843 11 C 0.129 3.871 12 N -0.703 5.703 13 C 0.505 3.495 14 O -0.592 6.592 15 C -0.127 4.127 16 C -0.057 4.057 17 C -0.126 4.126 18 C -0.047 4.047 19 C -0.149 4.149 20 C 0.114 3.886 21 F -0.138 7.138 22 C -0.197 4.197 23 C 0.109 3.891 24 F -0.145 7.145 25 C -0.151 4.151 26 C -0.121 4.121 27 C -0.125 4.125 28 H 0.249 0.751 29 H 0.377 0.623 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.407 0.593 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.177 0.823 38 H 0.172 0.828 39 H 0.151 0.849 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 -17.618 -14.601 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.259 4.259 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.227 1.227 6 H -0.220 1.220 7 C -0.351 4.351 8 H 0.082 0.918 9 N -0.345 5.345 10 C 0.066 3.934 11 C 0.002 3.998 12 N -0.352 5.352 13 C 0.293 3.707 14 O -0.474 6.474 15 C -0.166 4.166 16 C -0.095 4.095 17 C -0.127 4.127 18 C -0.065 4.065 19 C -0.168 4.168 20 C 0.094 3.906 21 F -0.117 7.117 22 C -0.216 4.216 23 C 0.089 3.911 24 F -0.123 7.123 25 C -0.191 4.191 26 C -0.159 4.159 27 C -0.163 4.163 28 H 0.058 0.942 29 H 0.211 0.789 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.242 0.758 33 H 0.106 0.894 34 H 0.148 0.852 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.195 0.805 38 H 0.189 0.811 39 H 0.169 0.831 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.598 -17.415 -14.809 22.915 hybrid contribution -0.421 2.306 0.150 2.349 sum -2.020 -15.108 -14.659 21.147 Atomic orbital electron populations 1.69762 1.05968 1.25561 1.59847 1.25296 0.96193 1.00124 1.04302 0.85364 0.78311 0.81396 0.76509 1.19845 1.22689 1.21968 1.19301 0.90884 0.85003 1.39873 0.91810 1.42108 1.05722 0.99896 1.86730 1.21137 0.94251 0.86966 0.91046 1.21650 0.90752 0.99434 0.87959 1.45784 1.10966 1.72952 1.05491 1.21167 0.90130 0.75144 0.84253 1.90644 1.20766 1.52586 1.83381 1.21630 0.97181 1.06077 0.91742 1.20161 0.95091 1.04391 0.89867 1.20086 0.99896 0.92643 1.00045 1.21164 0.94609 0.97034 0.93680 1.21539 0.98051 0.98575 0.98596 1.17478 0.90116 0.94037 0.88947 1.91521 1.63036 1.97061 1.60032 1.21126 1.01200 0.99377 0.99929 1.17505 0.97192 0.80594 0.95784 1.91522 1.90689 1.43522 1.86615 1.23375 0.97620 1.00046 0.98107 1.22590 0.96977 1.00152 0.96156 1.23101 0.99590 0.96951 0.96610 0.94242 0.78944 0.91042 0.95559 0.75754 0.89394 0.85186 0.88224 0.92436 0.80538 0.81062 0.83096 0.88728 0.93670 0.92223 0.89549 0.91425 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.69 13.07 21.65 0.28 -56.41 16 2 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.95 46.74 29.55 68.60 2.03 48.77 16 4 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 6 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 7 C -0.22 -11.64 9.06 84.03 0.76 -10.87 16 8 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 9 N -0.71 -32.19 5.18 -300.95 -1.56 -33.75 16 10 C 0.16 5.49 0.80 4.13 0.00 5.50 16 11 C 0.13 4.54 5.03 86.38 0.43 4.97 16 12 N -0.70 -22.31 5.45 -463.06 -2.52 -24.84 16 13 C 0.51 16.02 7.83 87.66 0.69 16.71 16 14 O -0.59 -23.17 15.98 -3.03 -0.05 -23.22 16 15 C -0.13 -2.87 5.68 29.85 0.17 -2.70 16 16 C -0.06 -1.25 4.41 29.85 0.13 -1.11 16 17 C -0.13 -2.30 5.14 -19.81 -0.10 -2.40 16 18 C -0.05 -0.56 9.68 22.26 0.22 -0.34 16 19 C -0.15 -1.72 10.02 22.32 0.22 -1.50 16 20 C 0.11 1.86 7.30 22.37 0.16 2.02 16 21 F -0.14 -2.43 17.27 44.97 0.78 -1.65 16 22 C -0.20 -3.72 10.01 22.36 0.22 -3.50 16 23 C 0.11 2.38 7.24 22.37 0.16 2.54 16 24 F -0.14 -3.99 16.56 44.97 0.74 -3.25 16 25 C -0.15 -4.86 7.29 31.18 0.23 -4.63 16 26 C -0.12 -3.36 8.00 31.18 0.25 -3.11 16 27 C -0.12 -3.30 7.08 31.12 0.22 -3.08 16 28 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.38 18.44 7.87 -92.71 -0.73 17.71 16 30 H 0.07 2.24 8.06 -2.39 -0.02 2.23 16 31 H 0.03 1.14 7.85 -2.39 -0.02 1.12 16 32 H 0.41 11.77 8.30 -92.71 -0.77 11.00 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.10 1.91 8.01 -2.39 -0.02 1.89 16 36 H 0.06 1.58 7.74 -2.39 -0.02 1.56 16 37 H 0.18 0.97 8.06 -2.92 -0.02 0.94 16 38 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 39 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.09 2.53 8.04 -2.39 -0.02 2.52 16 41 H 0.04 1.70 7.86 -2.39 -0.02 1.69 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.07 1.80 8.09 -2.39 -0.02 1.78 16 45 H 0.11 2.26 8.10 -2.38 -0.02 2.24 16 Total: -1.00 -69.44 387.26 3.47 -65.97 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -0.47 Total: 33.16 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 4.24 Total: -4.78 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -3.80 Total: -115.00 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 1.52 Total: -4.90 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -69.44 3.47 -65.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700141809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.938 kcal (2) G-P(sol) polarization free energy of solvation -69.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds