Wall clock time and date at job start Sat Apr 11 2020 05:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46860 * 299.99795 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99608 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08996 * 110.03206 * 240.71356 * 14 13 12 16 16 C 1.52997 * 110.03196 * 119.28084 * 14 13 12 17 17 N 1.46495 * 109.47257 * 67.83445 * 16 14 13 18 18 C 1.34778 * 120.00207 * 179.97438 * 17 16 14 19 19 O 1.21281 * 119.99885 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99872 * 180.02562 * 18 17 16 21 21 C 1.50703 * 109.47046 * 180.02562 * 20 18 17 22 22 C 1.38230 * 119.98448 * 264.72208 * 21 20 18 23 23 C 1.38185 * 120.04905 * 179.76431 * 22 21 20 24 24 C 1.38499 * 120.02496 * 0.51088 * 23 22 21 25 25 F 1.35101 * 120.01379 * 179.76494 * 24 23 22 26 26 C 1.38397 * 119.97137 * 359.75018 * 24 23 22 27 27 C 1.38436 * 119.95181 * 359.97438 * 26 24 23 28 28 F 1.35095 * 120.01229 * 180.02562 * 27 26 24 29 29 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 30 30 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 32 32 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 33 33 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 34 34 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 35 35 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 36 36 H 1.09003 * 109.46907 * 187.83566 * 16 14 13 37 37 H 1.08999 * 109.47243 * 307.83162 * 16 14 13 38 38 H 0.97004 * 119.99936 * 0.02562 * 17 16 14 39 39 H 1.08999 * 109.47802 * 300.00200 * 20 18 17 40 40 H 1.08999 * 109.47403 * 60.00515 * 20 18 17 41 41 H 1.08000 * 119.97723 * 0.02562 * 22 21 20 42 42 H 1.08007 * 119.99213 * 180.26110 * 23 22 21 43 43 H 1.07998 * 120.01902 * 180.02562 * 26 24 23 44 44 H 1.09002 * 110.48043 * 217.71140 * 29 14 13 45 45 H 1.09002 * 110.60152 * 95.12776 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0013 -3.5565 0.5374 12 6 2.2959 -4.1533 -1.4473 13 6 2.4851 -5.6771 -1.2983 14 6 1.7856 -6.0810 0.0114 15 1 2.5077 -6.5179 0.7011 16 6 0.6658 -7.0821 -0.2796 17 7 1.2478 -8.3462 -0.7373 18 6 0.4455 -9.3819 -1.0540 19 8 -0.7582 -9.2672 -0.9604 20 6 1.0442 -10.6824 -1.5242 21 6 -0.0587 -11.6685 -1.8110 22 6 -0.4389 -12.5803 -0.8441 23 6 -1.4533 -13.4819 -1.1040 24 6 -2.0831 -13.4799 -2.3375 25 9 -3.0717 -14.3646 -2.5930 26 6 -1.6996 -12.5710 -3.3081 27 6 -0.6871 -11.6645 -3.0447 28 9 -0.3120 -10.7764 -3.9911 29 6 1.1963 -4.7884 0.6130 30 1 -0.4849 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 1.4299 -3.9357 -2.0723 33 1 3.1933 -3.6965 -1.8646 34 1 3.5467 -5.9180 -1.2443 35 1 2.0274 -6.1950 -2.1411 36 1 0.0885 -7.2556 0.6285 37 1 0.0124 -6.6813 -1.0545 38 1 2.2106 -8.4381 -0.8118 39 1 1.6216 -10.5094 -2.4324 40 1 1.6976 -11.0829 -0.7491 41 1 0.0544 -12.5853 0.1166 42 1 -1.7525 -14.1912 -0.3464 43 1 -2.1905 -12.5685 -4.2701 44 1 1.2908 -4.7954 1.6988 45 1 0.1521 -4.6715 0.3227 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707106244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:10 Heat of formation + Delta-G solvation = -107.637894 kcal Electronic energy + Delta-G solvation = -27899.585265 eV Core-core repulsion = 23552.346345 eV Total energy + Delta-G solvation = -4347.238920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.39061 -49.34889 -40.24824 -39.04442 -38.06378 -34.96433 -33.45953 -33.09710 -31.24574 -30.77771 -29.23047 -27.98547 -26.93461 -24.33250 -23.65233 -23.07019 -22.44654 -20.73635 -19.69579 -19.40090 -18.61422 -17.68587 -17.40721 -17.07908 -16.67955 -16.25512 -16.19816 -15.77573 -15.63271 -15.41889 -15.02841 -14.89353 -14.76585 -14.27493 -13.99188 -13.72823 -13.55244 -13.27945 -12.93368 -12.81310 -12.37021 -12.34466 -12.23369 -12.08324 -11.85064 -11.78461 -11.18022 -10.88481 -10.80516 -10.61332 -10.57618 -10.28302 -10.15168 -10.11185 -9.83231 -9.66832 -9.48317 -9.17222 -9.02671 -8.88701 -6.94699 -5.76926 -3.05513 0.49002 0.59499 2.44793 2.77450 3.18069 3.42733 3.46216 3.48173 3.50609 3.94954 4.06916 4.11707 4.39940 4.57702 4.59928 4.61922 4.82773 4.90548 4.92975 4.99135 5.04869 5.34629 5.36974 5.49270 5.51440 5.53610 5.59193 5.67990 5.71623 5.74433 5.87848 5.95433 6.01399 6.04379 6.20761 6.31662 6.32243 6.35561 6.45104 6.55832 6.70605 6.86722 7.09942 7.32028 7.70538 8.04444 8.41943 9.52822 10.11809 10.45713 11.45786 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028661 B = 0.001700 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.702811 B =16466.657654 C =16602.569478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.056 0.944 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.073 0.927 16 C 0.126 3.874 17 N -0.726 5.726 18 C 0.511 3.489 19 O -0.533 6.533 20 C -0.103 4.103 21 C -0.109 4.109 22 C -0.049 4.049 23 C -0.162 4.162 24 C 0.129 3.871 25 F -0.132 7.132 26 C -0.191 4.191 27 C 0.147 3.853 28 F -0.127 7.127 29 C -0.123 4.123 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.401 0.599 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.149 0.851 44 H 0.063 0.937 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.031 -31.051 -2.969 31.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.066 3.934 11 H 0.074 0.926 12 C -0.185 4.185 13 C -0.158 4.158 14 C -0.119 4.119 15 H 0.092 0.908 16 C 0.003 3.997 17 N -0.378 5.378 18 C 0.297 3.703 19 O -0.409 6.409 20 C -0.143 4.143 21 C -0.111 4.111 22 C -0.067 4.067 23 C -0.181 4.181 24 C 0.109 3.891 25 F -0.111 7.111 26 C -0.211 4.211 27 C 0.127 3.873 28 F -0.105 7.105 29 C -0.162 4.162 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.235 0.765 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.082 0.918 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.244 -30.779 -2.929 30.999 hybrid contribution 0.431 0.950 -0.396 1.116 sum 2.674 -29.829 -3.325 30.132 Atomic orbital electron populations 1.69671 1.05107 1.25550 1.57734 1.24760 0.95522 0.97731 1.03067 0.86129 0.78761 0.84191 0.77178 1.20573 1.21899 1.21888 1.19309 0.91025 0.84170 1.42547 0.91126 1.42399 1.05781 0.99798 1.88047 1.21156 0.94306 0.85616 0.92304 0.92638 1.23077 1.01362 0.92765 1.01302 1.22211 0.99340 0.98081 0.96210 1.21956 0.96476 0.95606 0.97897 0.90827 1.21581 0.96016 0.82186 0.99891 1.46045 1.10225 1.13315 1.68169 1.20381 0.87316 0.84991 0.77660 1.90752 1.14566 1.83113 1.52446 1.20604 0.96967 0.92185 1.04541 1.19386 0.99715 0.98863 0.93102 1.20744 0.95146 0.92490 0.98367 1.21169 0.98404 1.02262 0.96283 1.17301 0.88088 0.89512 0.94179 1.91536 1.58894 1.66107 1.94532 1.21002 1.00426 0.97839 1.01812 1.17077 0.95075 0.88842 0.86313 1.91539 1.90029 1.65916 1.63024 1.22610 1.00523 0.93353 0.99755 0.93548 0.78190 0.91857 0.92574 0.92435 0.92393 0.91505 0.91131 0.76544 0.87378 0.87070 0.83871 0.83870 0.83350 0.91775 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.61 9.96 -15.06 -0.15 -6.76 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.92 5.23 -51.51 -0.27 -18.19 16 10 C 0.18 3.39 3.56 -65.95 -0.23 3.16 16 11 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 12 C -0.14 -2.46 6.51 -25.07 -0.16 -2.62 16 13 C -0.12 -1.50 6.19 -25.61 -0.16 -1.66 16 14 C -0.10 -1.19 2.96 -89.50 -0.27 -1.45 16 15 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 16 C 0.13 1.49 4.69 -4.05 -0.02 1.47 16 17 N -0.73 -6.77 5.34 -60.30 -0.32 -7.09 16 18 C 0.51 5.46 7.82 -10.99 -0.09 5.37 16 19 O -0.53 -8.15 16.03 5.56 0.09 -8.06 16 20 C -0.10 -0.70 5.60 -29.03 -0.16 -0.86 16 21 C -0.11 -0.91 4.38 -104.55 -0.46 -1.37 16 22 C -0.05 -0.33 9.67 -39.60 -0.38 -0.72 16 23 C -0.16 -1.13 10.03 -39.50 -0.40 -1.53 16 24 C 0.13 1.09 7.30 -39.43 -0.29 0.80 16 25 F -0.13 -1.19 17.27 2.25 0.04 -1.15 16 26 C -0.19 -1.69 10.01 -39.45 -0.39 -2.08 16 27 C 0.15 1.42 7.24 -39.43 -0.29 1.14 16 28 F -0.13 -1.38 16.57 2.25 0.04 -1.34 16 29 C -0.12 -1.92 5.98 -25.09 -0.15 -2.07 16 30 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.38 10.21 7.76 -40.82 -0.32 9.89 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.70 7.61 -51.93 -0.40 0.30 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.40 2.55 8.35 -40.82 -0.34 2.21 16 39 H 0.11 0.60 7.79 -51.93 -0.40 0.19 16 40 H 0.11 0.39 8.05 -51.93 -0.42 -0.03 16 41 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 43 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 1.15 7.73 -51.93 -0.40 0.75 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -33.75 384.46 -9.09 -42.84 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.47 Total: 7.08 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -3.69 Total: -9.70 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.13 Total: -52.81 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.08 Total: -2.49 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.75 -9.09 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707106244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.796 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds