Wall clock time and date at job start Sat Apr 11 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48498 * 109.47052 * 270.00286 * 3 2 1 5 5 H 1.48496 * 109.47246 * 29.99849 * 3 2 1 6 6 H 1.48493 * 109.47043 * 150.00066 * 3 2 1 7 7 C 1.38811 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99722 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99833 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99679 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47089 * 34.99458 * 10 9 7 12 12 C 1.52997 * 109.47208 * 154.99674 * 10 9 7 13 13 N 1.46496 * 109.47194 * 305.00062 * 12 10 9 14 14 C 1.34779 * 120.00054 * 179.97438 * 13 12 10 15 15 O 1.21273 * 120.00093 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99767 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.46735 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.46912 * 180.02562 * 17 16 14 19 19 C 1.38205 * 119.99664 * 264.72412 * 18 17 16 20 20 C 1.38432 * 119.99473 * 179.76905 * 19 18 17 21 21 F 1.35106 * 119.99999 * 180.27208 * 20 19 18 22 22 C 1.38472 * 120.00308 * 0.53097 * 20 19 18 23 23 C 1.38165 * 119.99635 * 359.72209 * 22 20 19 24 24 C 1.38420 * 120.00085 * 85.00081 * 18 17 16 25 25 F 1.35103 * 120.00346 * 359.97438 * 24 18 17 26 26 C 1.53002 * 109.47040 * 274.99805 * 10 9 7 27 27 C 1.52995 * 117.49894 * 128.74748 * 26 10 9 28 28 C 1.52995 * 117.49976 * 60.08802 * 26 10 9 29 29 H 0.96994 * 120.00251 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00231 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47624 * 184.99560 * 12 10 9 32 32 H 1.09002 * 109.47045 * 64.99936 * 12 10 9 33 33 H 0.97005 * 120.00266 * 359.97438 * 13 12 10 34 34 H 1.09001 * 109.46797 * 60.00350 * 16 14 13 35 35 H 1.08992 * 109.47518 * 300.00347 * 16 14 13 36 36 H 1.09002 * 109.47398 * 300.00410 * 17 16 14 37 37 H 1.09001 * 109.47194 * 60.00591 * 17 16 14 38 38 H 1.07999 * 120.00330 * 0.02562 * 19 18 17 39 39 H 1.08000 * 120.00156 * 179.70008 * 22 20 19 40 40 H 1.07995 * 119.99700 * 179.97438 * 23 22 20 41 41 H 1.09005 * 115.55032 * 274.41883 * 26 10 9 42 42 H 1.08998 * 117.49984 * 359.97438 * 27 26 10 43 43 H 1.09006 * 117.49830 * 145.01948 * 27 26 10 44 44 H 1.09000 * 117.49832 * 214.98380 * 28 26 10 45 45 H 1.08998 * 117.49834 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9690 -3.5504 0.5899 12 6 1.1812 -4.7521 0.6102 13 7 0.7346 -4.3354 1.9418 14 6 -0.0552 -5.1473 2.6724 15 8 -0.3957 -6.2229 2.2276 16 6 -0.5141 -4.7189 4.0424 17 6 -1.3913 -5.8142 4.6520 18 6 -1.8507 -5.3856 6.0218 19 6 -1.1505 -5.7889 7.1431 20 6 -1.5698 -5.3912 8.4010 21 9 -0.8822 -5.7808 9.4968 22 6 -2.6970 -4.5984 8.5366 23 6 -3.3999 -4.1995 7.4160 24 6 -2.9772 -4.5927 6.1573 25 9 -3.6646 -4.2026 5.0616 26 6 2.4221 -4.0355 -1.4365 27 6 3.8823 -4.3890 -1.7257 28 6 3.3029 -3.0621 -2.2222 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3880 0.0005 31 1 1.7560 -5.6745 0.6919 32 1 0.3136 -4.9201 -0.0279 33 1 1.0073 -3.4752 2.2977 34 1 -1.0885 -3.7961 3.9611 35 1 0.3536 -4.5516 4.6805 36 1 -2.2590 -5.9819 4.0141 37 1 -0.8164 -6.7368 4.7335 38 1 -0.2739 -6.4109 7.0376 39 1 -3.0269 -4.2921 9.5183 40 1 -4.2792 -3.5816 7.5218 41 1 1.6542 -4.5774 -1.9887 42 1 4.5838 -4.3513 -0.8924 43 1 4.0751 -5.1632 -2.4685 44 1 3.1147 -2.9638 -3.2914 45 1 3.6228 -2.1516 -1.7156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713126705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:15 Heat of formation + Delta-G solvation = -78.694618 kcal Electronic energy + Delta-G solvation = -28279.240757 eV Core-core repulsion = 23933.256912 eV Total energy + Delta-G solvation = -4345.983845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.22266 -49.10445 -39.69194 -39.04107 -37.56741 -34.75393 -34.19316 -33.39164 -31.15767 -30.68256 -29.79874 -28.00508 -25.26389 -23.62246 -23.23979 -22.38515 -21.72952 -21.44591 -20.15112 -19.43389 -17.92565 -17.57666 -17.51091 -17.36420 -16.59428 -16.10320 -15.65667 -15.52789 -15.48414 -15.03883 -14.73652 -14.57117 -14.46851 -14.13158 -13.83434 -13.76015 -13.28122 -13.14762 -13.06477 -12.90235 -12.69471 -12.48912 -12.00999 -11.85192 -11.39045 -11.27987 -11.18003 -11.09447 -10.89663 -10.88414 -10.73642 -10.15300 -9.96315 -9.76137 -9.55003 -9.39361 -9.30020 -9.00928 -8.80568 -8.63363 -7.07924 -5.84568 -3.14310 0.62072 0.67953 2.93449 3.00118 3.37227 3.42902 3.44822 3.53840 3.83796 3.90604 4.21785 4.36446 4.39491 4.56830 4.63244 4.79198 4.91551 5.02934 5.15850 5.21179 5.40279 5.45642 5.49646 5.52523 5.58483 5.60686 5.62323 5.66246 5.73241 5.73807 5.88458 5.99653 6.00587 6.02497 6.05688 6.15714 6.38818 6.46739 6.52681 6.58434 6.75116 6.89735 6.95812 7.61962 7.92266 8.32189 8.55757 9.44474 9.98566 10.34727 11.37144 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.002542 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.019948 B =11011.920531 C =12329.819684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.193 3.807 11 H 0.055 0.945 12 C 0.119 3.881 13 N -0.712 5.712 14 C 0.512 3.488 15 O -0.556 6.556 16 C -0.137 4.137 17 C -0.065 4.065 18 C -0.084 4.084 19 C -0.122 4.122 20 C 0.089 3.911 21 F -0.137 7.137 22 C -0.131 4.131 23 C -0.123 4.123 24 C 0.095 3.905 25 F -0.128 7.128 26 C -0.159 4.159 27 C -0.196 4.196 28 C -0.156 4.156 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.411 0.589 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 -11.128 14.345 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.073 0.927 12 C -0.006 4.006 13 N -0.363 5.363 14 C 0.298 3.702 15 O -0.435 6.435 16 C -0.177 4.177 17 C -0.102 4.102 18 C -0.085 4.085 19 C -0.141 4.141 20 C 0.070 3.930 21 F -0.115 7.115 22 C -0.150 4.150 23 C -0.142 4.142 24 C 0.075 3.925 25 F -0.106 7.106 26 C -0.181 4.181 27 C -0.234 4.234 28 C -0.194 4.194 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.247 0.753 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.758 -11.719 14.040 18.495 hybrid contribution 0.239 1.531 -0.037 1.550 sum -2.518 -10.188 14.002 17.499 Atomic orbital electron populations 1.69658 1.05046 1.25720 1.57175 1.24721 0.95430 0.97563 1.02815 0.86268 0.78681 0.84119 0.77565 1.21744 1.21831 1.20784 1.19149 0.90806 0.83845 1.43108 0.91161 1.42454 1.05825 0.99400 1.88081 1.20055 0.94327 0.86150 0.91231 0.92743 1.21585 0.98554 0.97454 0.82991 1.45990 1.50556 1.21888 1.17899 1.20453 0.78303 0.84475 0.86954 1.90664 1.57177 1.22905 1.72801 1.21619 1.01245 1.00476 0.94352 1.20310 1.00960 0.98563 0.90407 1.19861 0.94233 0.97580 0.96796 1.20963 1.01420 1.01884 0.89839 1.17660 0.93014 0.99285 0.83056 1.91522 1.78511 1.89369 1.52111 1.20977 0.94838 0.99080 1.00067 1.21018 1.01501 1.01406 0.90248 1.17597 0.92638 0.98889 0.83351 1.91557 1.78122 1.88973 1.51972 1.23035 0.92152 1.03062 0.99846 1.22961 0.97284 0.99816 1.03350 1.22781 1.03415 0.94041 0.99115 0.93459 0.78037 0.91717 0.91847 0.75283 0.88399 0.88725 0.89256 0.89309 0.83588 0.83815 0.83601 0.89154 0.89555 0.90085 0.90219 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.46 13.06 55.49 0.72 -25.73 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 21.27 29.55 -169.99 -5.02 16.24 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.24 -5.96 8.63 -15.06 -0.13 -6.09 16 8 H 0.07 1.72 6.91 -52.49 -0.36 1.36 16 9 N -0.72 -16.06 4.54 -53.42 -0.24 -16.31 16 10 C 0.19 3.50 2.70 -67.93 -0.18 3.32 16 11 H 0.05 1.00 7.84 -51.93 -0.41 0.59 16 12 C 0.12 1.98 5.22 -4.05 -0.02 1.95 16 13 N -0.71 -11.33 5.39 -60.30 -0.32 -11.66 16 14 C 0.51 7.93 7.83 -10.98 -0.09 7.85 16 15 O -0.56 -10.22 15.98 5.56 0.09 -10.13 16 16 C -0.14 -1.63 5.68 -27.88 -0.16 -1.79 16 17 C -0.06 -0.72 4.41 -27.88 -0.12 -0.84 16 18 C -0.08 -0.84 5.14 -104.57 -0.54 -1.37 16 19 C -0.12 -1.09 9.66 -39.52 -0.38 -1.47 16 20 C 0.09 0.80 7.30 -39.42 -0.29 0.51 16 21 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 22 C -0.13 -1.01 10.02 -39.52 -0.40 -1.41 16 23 C -0.12 -1.02 10.02 -39.52 -0.40 -1.42 16 24 C 0.09 0.99 7.24 -39.43 -0.29 0.70 16 25 F -0.13 -1.56 16.56 2.25 0.04 -1.53 16 26 C -0.16 -2.73 5.36 -90.62 -0.49 -3.22 16 27 C -0.20 -2.93 10.18 -26.70 -0.27 -3.21 16 28 C -0.16 -2.74 9.78 -26.70 -0.26 -3.00 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.39 9.52 7.80 -40.82 -0.32 9.20 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.41 6.59 8.14 -40.82 -0.33 6.26 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.11 7.75 -51.93 -0.40 0.71 16 37 H 0.09 0.94 8.01 -51.93 -0.42 0.52 16 38 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 42 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.10 2.05 6.23 -51.93 -0.32 1.72 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -29.49 388.50 -9.29 -38.78 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -6.34 Total: 15.57 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -4.10 Total: -9.82 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.16 Total: -53.70 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.08 Total: -2.80 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.49 -9.29 -38.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713126705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.917 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds