Wall clock time and date at job start Sat Apr 11 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99573 * 2 1 4 4 H 1.48498 * 109.47451 * 269.99781 * 3 2 1 5 5 H 1.48497 * 109.47471 * 30.00407 * 3 2 1 6 6 H 1.48503 * 109.47044 * 150.00210 * 3 2 1 7 7 C 1.38812 * 120.00677 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99341 * 0.02562 * 7 2 1 9 9 N 1.36928 * 120.00406 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00123 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46596 * 35.00588 * 10 9 7 12 12 C 1.52997 * 109.47473 * 275.00490 * 10 9 7 13 13 C 1.53002 * 109.46817 * 299.99988 * 12 10 9 14 14 C 1.52996 * 109.46972 * 299.99733 * 13 12 10 15 15 C 1.52997 * 109.47131 * 60.00459 * 14 13 12 16 16 H 1.08993 * 109.47194 * 60.00154 * 15 14 13 17 17 N 1.46506 * 109.46949 * 180.02562 * 15 14 13 18 18 C 1.34783 * 119.99811 * 274.99482 * 17 15 14 19 19 O 1.21287 * 119.99943 * 0.02562 * 18 17 15 20 20 C 1.50696 * 120.00006 * 179.97438 * 18 17 15 21 21 C 1.52999 * 109.47260 * 179.97438 * 20 18 17 22 22 O 1.42895 * 109.47461 * 180.02562 * 21 20 18 23 23 C 1.42895 * 114.00242 * 180.02562 * 22 21 20 24 24 C 1.53005 * 109.47393 * 180.02562 * 23 22 21 25 25 F 1.39897 * 109.46905 * 60.00185 * 24 23 22 26 26 F 1.39898 * 109.47239 * 180.02562 * 24 23 22 27 27 F 1.39907 * 109.46892 * 300.00168 * 24 23 22 28 28 C 1.52999 * 109.46991 * 299.99311 * 15 14 13 29 29 H 0.96998 * 120.00015 * 359.97438 * 1 2 3 30 30 H 0.97007 * 120.00232 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47153 * 59.99757 * 12 10 9 32 32 H 1.08996 * 109.46952 * 179.97438 * 12 10 9 33 33 H 1.08996 * 109.47407 * 60.00219 * 13 12 10 34 34 H 1.09000 * 109.46986 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.46993 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.47380 * 299.99696 * 14 13 12 37 37 H 0.97000 * 120.00279 * 94.99983 * 17 15 14 38 38 H 1.08997 * 109.47646 * 300.00758 * 20 18 17 39 39 H 1.09002 * 109.46942 * 60.00572 * 20 18 17 40 40 H 1.08997 * 109.47525 * 300.00973 * 21 20 18 41 41 H 1.09002 * 109.46560 * 60.00480 * 21 20 18 42 42 H 1.09002 * 109.47556 * 300.00697 * 23 22 21 43 43 H 1.09005 * 109.46732 * 60.00682 * 23 22 21 44 44 H 1.08993 * 109.47839 * 300.00447 * 28 15 14 45 45 H 1.09000 * 109.47160 * 180.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4707 0.0011 11 1 3.5647 -3.2068 -0.5874 12 6 4.2589 -2.9737 1.4386 13 6 5.0275 -1.9403 2.2646 14 6 6.4144 -1.7289 1.6543 15 6 6.2678 -1.2258 0.2168 16 1 5.7228 -0.2819 0.2160 17 7 7.5959 -1.0240 -0.3678 18 6 8.2519 0.1360 -0.1659 19 8 7.7428 1.0125 0.5002 20 6 9.6182 0.3434 -0.7667 21 6 10.1359 1.7327 -0.3890 22 8 11.4313 1.9296 -0.9592 23 6 12.0085 3.2032 -0.6646 24 6 13.3863 3.3032 -1.3225 25 9 13.2529 3.1609 -2.7078 26 9 13.9516 4.5499 -1.0336 27 9 14.2142 2.2901 -0.8271 28 6 5.4993 -2.2593 -0.6092 29 1 -0.4850 0.8400 0.0004 30 1 3.8647 -0.3619 -0.0004 31 1 3.2708 -3.1243 1.8734 32 1 4.8036 -3.9178 1.4393 33 1 4.4824 -0.9964 2.2639 34 1 5.1316 -2.2984 3.2888 35 1 6.9621 -0.9930 2.2430 36 1 6.9595 -2.6728 1.6551 37 1 8.0031 -1.7251 -0.9002 38 1 10.3017 -0.4154 -0.3858 39 1 9.5540 0.2627 -1.8518 40 1 9.4523 2.4913 -0.7702 41 1 10.2001 1.8138 0.6961 42 1 11.3637 3.9926 -1.0508 43 1 12.1121 3.3142 0.4148 44 1 6.0443 -3.2032 -0.6085 45 1 5.3952 -1.9011 -1.6334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713374815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:29 Heat of formation + Delta-G solvation = -238.691010 kcal Electronic energy + Delta-G solvation = -29528.150581 eV Core-core repulsion = 24744.459547 eV Total energy + Delta-G solvation = -4783.691034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.52602 -48.08758 -47.97939 -40.21450 -38.78186 -38.07329 -34.69341 -33.20293 -32.50825 -31.20127 -30.02950 -29.19976 -28.40295 -24.41946 -23.73948 -23.36284 -22.05277 -21.71241 -20.47703 -19.10754 -19.06609 -18.71587 -18.17690 -17.81545 -17.40229 -16.79820 -16.26790 -16.09014 -15.37890 -14.90586 -14.81562 -14.66155 -14.58702 -14.44566 -14.36923 -14.16223 -14.15498 -13.99799 -13.92934 -13.72022 -13.36621 -12.77241 -12.52874 -12.29246 -12.26108 -12.12995 -11.93064 -11.82426 -11.62928 -11.08122 -10.91216 -10.78022 -10.39797 -10.36513 -10.29416 -10.17766 -10.03494 -9.64862 -9.54862 -9.05656 -8.85374 -7.26440 -5.76628 -3.11857 1.93573 2.50769 2.66275 3.19933 3.39137 3.39631 3.45345 3.48300 3.51809 4.00557 4.37135 4.49355 4.50451 4.60400 4.61839 4.76798 4.93224 5.03823 5.09785 5.28503 5.32562 5.37321 5.39794 5.52192 5.56020 5.66809 5.74164 5.93466 5.94582 6.02472 6.19773 6.28180 6.28530 6.36568 6.51753 6.65055 6.71406 6.87100 6.95694 7.40999 7.99516 8.11661 8.42458 9.20951 9.93856 10.12996 11.41658 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017080 B = 0.002161 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.985056 B =12953.127502 C =13966.584798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.877 3.123 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.746 5.746 10 C 0.184 3.816 11 H 0.061 0.939 12 C -0.136 4.136 13 C -0.111 4.111 14 C -0.121 4.121 15 C 0.143 3.857 16 H 0.091 0.909 17 N -0.722 5.722 18 C 0.515 3.485 19 O -0.539 6.539 20 C -0.140 4.140 21 C 0.079 3.921 22 O -0.377 6.377 23 C 0.020 3.980 24 C 0.462 3.538 25 F -0.176 7.176 26 F -0.177 7.177 27 F -0.176 7.176 28 C -0.132 4.132 29 H 0.259 0.741 30 H 0.361 0.639 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.399 0.601 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.926 0.847 -1.419 27.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.708 3.292 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.074 3.926 11 H 0.079 0.921 12 C -0.176 4.176 13 C -0.149 4.149 14 C -0.160 4.160 15 C 0.039 3.961 16 H 0.109 0.891 17 N -0.373 5.373 18 C 0.300 3.700 19 O -0.416 6.416 20 C -0.180 4.180 21 C 0.002 3.998 22 O -0.296 6.296 23 C -0.059 4.059 24 C 0.408 3.592 25 F -0.157 7.157 26 F -0.158 7.158 27 F -0.158 7.158 28 C -0.170 4.170 29 H 0.069 0.931 30 H 0.195 0.805 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.233 0.767 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 27.412 1.283 -1.080 27.464 hybrid contribution 0.858 1.124 -0.171 1.424 sum 28.270 2.407 -1.251 28.400 Atomic orbital electron populations 1.69695 1.05077 1.25777 1.57643 1.24640 0.95170 0.97075 1.02091 0.86663 0.79463 0.85255 0.77864 1.21177 1.21715 1.20051 1.19060 0.80609 0.94620 1.42834 0.89149 1.42871 1.03984 1.01918 1.90210 1.20137 0.89369 0.89577 0.93483 0.92096 1.22155 1.00156 0.96720 0.98570 1.21373 0.94473 1.01189 0.97877 1.21860 0.98341 1.00408 0.95393 1.21096 0.81628 1.00587 0.92786 0.89110 1.46147 1.19729 1.17223 1.54170 1.20288 0.86769 0.82299 0.80631 1.90763 1.68625 1.42492 1.39678 1.21465 0.94698 0.98145 1.03698 1.22287 0.82082 0.97002 0.98385 1.87808 1.34006 1.32005 1.75807 1.23495 0.90689 0.89897 1.01779 1.20189 0.88040 0.73678 0.77342 1.93223 1.96010 1.95367 1.31097 1.93216 1.86638 1.42667 1.93325 1.93221 1.74815 1.60442 1.87288 1.22128 0.97365 0.98000 0.99543 0.93097 0.80534 0.91439 0.93446 0.90919 0.92862 0.92297 0.92362 0.76717 0.87787 0.87725 0.91366 0.91437 0.88326 0.88363 0.91449 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 22.49 27.74 -169.99 -4.71 17.77 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.27 -6.80 6.52 56.52 0.37 -6.43 16 7 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 9 N -0.75 -16.89 4.08 -53.42 -0.22 -17.11 16 10 C 0.18 3.27 3.10 -67.93 -0.21 3.06 16 11 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 12 C -0.14 -2.20 5.61 -26.73 -0.15 -2.35 16 13 C -0.11 -1.77 5.77 -26.73 -0.15 -1.92 16 14 C -0.12 -1.69 5.49 -26.73 -0.15 -1.83 16 15 C 0.14 2.04 2.28 -67.93 -0.16 1.89 16 16 H 0.09 1.68 5.94 -51.93 -0.31 1.37 16 17 N -0.72 -7.90 5.08 -53.81 -0.27 -8.18 16 18 C 0.51 6.15 7.79 -10.98 -0.09 6.06 16 19 O -0.54 -8.87 15.65 5.55 0.09 -8.79 16 20 C -0.14 -1.12 6.07 -27.89 -0.17 -1.29 16 21 C 0.08 0.67 5.23 37.16 0.19 0.86 16 22 O -0.38 -3.16 10.23 -35.23 -0.36 -3.52 16 23 C 0.02 0.12 5.90 37.16 0.22 0.34 16 24 C 0.46 3.50 3.32 37.16 0.12 3.62 16 25 F -0.18 -1.59 17.26 2.25 0.04 -1.55 16 26 F -0.18 -1.33 17.32 2.25 0.04 -1.29 16 27 F -0.18 -1.56 17.26 2.25 0.04 -1.52 16 28 C -0.13 -1.82 5.08 -26.73 -0.14 -1.95 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.36 8.31 3.92 -40.82 -0.16 8.15 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.39 7.60 -51.93 -0.39 1.00 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 2.99 8.60 -40.82 -0.35 2.64 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 41 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -33.77 377.13 -6.54 -40.31 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.72 Total: 6.86 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.92 Total: -0.21 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.28 Total: -53.74 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.27 Total: -12.31 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.12 Total: -4.36 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.77 -6.54 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713374815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.380 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds