Wall clock time and date at job start Sat Apr 11 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99573 * 2 1 4 4 H 1.48498 * 109.47451 * 269.99781 * 3 2 1 5 5 H 1.48497 * 109.47471 * 30.00407 * 3 2 1 6 6 H 1.48503 * 109.47044 * 150.00210 * 3 2 1 7 7 C 1.38812 * 120.00677 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99341 * 0.02562 * 7 2 1 9 9 N 1.36928 * 120.00406 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00123 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46596 * 35.00588 * 10 9 7 12 12 C 1.52997 * 109.47473 * 275.00490 * 10 9 7 13 13 C 1.53002 * 109.46817 * 299.99988 * 12 10 9 14 14 C 1.52996 * 109.46972 * 299.99733 * 13 12 10 15 15 C 1.52997 * 109.47131 * 60.00459 * 14 13 12 16 16 H 1.08993 * 109.47194 * 60.00154 * 15 14 13 17 17 N 1.46506 * 109.46949 * 180.02562 * 15 14 13 18 18 C 1.34783 * 119.99811 * 274.99482 * 17 15 14 19 19 O 1.21287 * 119.99943 * 0.02562 * 18 17 15 20 20 C 1.50696 * 120.00006 * 179.97438 * 18 17 15 21 21 C 1.52999 * 109.47260 * 179.97438 * 20 18 17 22 22 O 1.42895 * 109.47461 * 180.02562 * 21 20 18 23 23 C 1.42895 * 114.00242 * 180.02562 * 22 21 20 24 24 C 1.53005 * 109.47393 * 180.02562 * 23 22 21 25 25 F 1.39897 * 109.46905 * 60.00185 * 24 23 22 26 26 F 1.39898 * 109.47239 * 180.02562 * 24 23 22 27 27 F 1.39907 * 109.46892 * 300.00168 * 24 23 22 28 28 C 1.52999 * 109.46991 * 299.99311 * 15 14 13 29 29 H 0.96998 * 120.00015 * 359.97438 * 1 2 3 30 30 H 0.97007 * 120.00232 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47153 * 59.99757 * 12 10 9 32 32 H 1.08996 * 109.46952 * 179.97438 * 12 10 9 33 33 H 1.08996 * 109.47407 * 60.00219 * 13 12 10 34 34 H 1.09000 * 109.46986 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.46993 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.47380 * 299.99696 * 14 13 12 37 37 H 0.97000 * 120.00279 * 94.99983 * 17 15 14 38 38 H 1.08997 * 109.47646 * 300.00758 * 20 18 17 39 39 H 1.09002 * 109.46942 * 60.00572 * 20 18 17 40 40 H 1.08997 * 109.47525 * 300.00973 * 21 20 18 41 41 H 1.09002 * 109.46560 * 60.00480 * 21 20 18 42 42 H 1.09002 * 109.47556 * 300.00697 * 23 22 21 43 43 H 1.09005 * 109.46732 * 60.00682 * 23 22 21 44 44 H 1.08993 * 109.47839 * 300.00447 * 28 15 14 45 45 H 1.09000 * 109.47160 * 180.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4707 0.0011 11 1 3.5647 -3.2068 -0.5874 12 6 4.2589 -2.9737 1.4386 13 6 5.0275 -1.9403 2.2646 14 6 6.4144 -1.7289 1.6543 15 6 6.2678 -1.2258 0.2168 16 1 5.7228 -0.2819 0.2160 17 7 7.5959 -1.0240 -0.3678 18 6 8.2519 0.1360 -0.1659 19 8 7.7428 1.0125 0.5002 20 6 9.6182 0.3434 -0.7667 21 6 10.1359 1.7327 -0.3890 22 8 11.4313 1.9296 -0.9592 23 6 12.0085 3.2032 -0.6646 24 6 13.3863 3.3032 -1.3225 25 9 13.2529 3.1609 -2.7078 26 9 13.9516 4.5499 -1.0336 27 9 14.2142 2.2901 -0.8271 28 6 5.4993 -2.2593 -0.6092 29 1 -0.4850 0.8400 0.0004 30 1 3.8647 -0.3619 -0.0004 31 1 3.2708 -3.1243 1.8734 32 1 4.8036 -3.9178 1.4393 33 1 4.4824 -0.9964 2.2639 34 1 5.1316 -2.2984 3.2888 35 1 6.9621 -0.9930 2.2430 36 1 6.9595 -2.6728 1.6551 37 1 8.0031 -1.7251 -0.9002 38 1 10.3017 -0.4154 -0.3858 39 1 9.5540 0.2627 -1.8518 40 1 9.4523 2.4913 -0.7702 41 1 10.2001 1.8138 0.6961 42 1 11.3637 3.9926 -1.0508 43 1 12.1121 3.3142 0.4148 44 1 6.0443 -3.2032 -0.6085 45 1 5.3952 -1.9011 -1.6334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713374815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:29 Heat of formation + Delta-G solvation = -262.468807 kcal Electronic energy + Delta-G solvation = -29529.181664 eV Core-core repulsion = 24744.459547 eV Total energy + Delta-G solvation = -4784.722117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.13573 -48.68981 -48.61979 -41.21912 -39.70723 -39.00798 -36.10666 -34.74643 -33.32032 -32.95066 -30.93846 -30.38202 -29.59403 -25.47006 -25.04739 -24.29024 -23.35089 -22.85771 -21.44711 -20.05580 -19.79968 -19.66942 -19.66837 -18.83869 -18.20794 -17.42194 -17.35114 -16.92358 -16.49746 -16.17848 -15.87338 -15.72418 -15.50714 -15.46849 -15.14512 -15.07052 -15.06004 -14.79907 -14.78742 -14.78206 -14.53427 -14.18135 -14.09391 -13.68296 -13.45414 -12.99838 -12.96706 -12.76972 -12.51784 -12.50212 -12.40985 -12.20461 -12.15131 -11.85122 -11.60132 -11.52889 -11.27163 -10.95796 -10.89878 -10.79945 -10.02965 -9.26962 -8.02786 -5.32375 1.32333 1.35363 1.36110 1.40629 1.61289 1.97789 2.44699 2.46844 2.82275 2.97583 3.29482 3.41589 3.61481 3.66508 3.83641 3.91893 4.00298 4.08198 4.09735 4.11208 4.18914 4.33177 4.41388 4.46564 4.57250 4.66710 4.72678 4.76910 4.79841 4.80638 4.98566 5.11189 5.16818 5.28293 5.41605 5.46044 5.58398 5.62266 5.71680 5.81879 6.23100 6.57656 7.09702 7.27934 7.88791 8.04161 9.19299 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017080 B = 0.002161 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.985056 B =12953.127502 C =13966.584798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.061 4.061 3 Si 0.940 3.060 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.214 4.214 8 H 0.064 0.936 9 N -0.750 5.750 10 C 0.170 3.830 11 H 0.056 0.944 12 C -0.128 4.128 13 C -0.110 4.110 14 C -0.111 4.111 15 C 0.146 3.854 16 H 0.045 0.955 17 N -0.708 5.708 18 C 0.511 3.489 19 O -0.590 6.590 20 C -0.129 4.129 21 C 0.080 3.920 22 O -0.387 6.387 23 C 0.017 3.983 24 C 0.462 3.538 25 F -0.186 7.186 26 F -0.177 7.177 27 F -0.185 7.185 28 C -0.118 4.118 29 H 0.255 0.745 30 H 0.360 0.640 31 H 0.036 0.964 32 H 0.088 0.912 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.420 0.580 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.307 -0.378 -1.821 31.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.253 4.253 3 Si 0.769 3.231 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.345 4.345 8 H 0.082 0.918 9 N -0.394 5.394 10 C 0.062 3.938 11 H 0.074 0.926 12 C -0.168 4.168 13 C -0.148 4.148 14 C -0.150 4.150 15 C 0.041 3.959 16 H 0.063 0.937 17 N -0.359 5.359 18 C 0.299 3.701 19 O -0.470 6.470 20 C -0.168 4.168 21 C 0.003 3.997 22 O -0.307 6.307 23 C -0.061 4.061 24 C 0.408 3.592 25 F -0.167 7.167 26 F -0.159 7.159 27 F -0.166 7.166 28 C -0.157 4.157 29 H 0.064 0.936 30 H 0.194 0.806 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.258 0.742 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.131 0.869 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 30.875 -0.004 -1.508 30.912 hybrid contribution -0.145 1.397 -0.033 1.405 sum 30.730 1.393 -1.541 30.800 Atomic orbital electron populations 1.69847 1.06738 1.26233 1.60679 1.25299 0.95871 1.00350 1.03738 0.85642 0.78292 0.81291 0.77876 1.20682 1.22373 1.19222 1.19080 0.82795 0.93276 1.39392 0.91788 1.42958 1.02338 1.04062 1.90015 1.20494 0.91260 0.87179 0.94849 0.92594 1.22041 0.99243 0.98594 0.96908 1.21337 0.95338 0.98976 0.99181 1.21769 0.96893 1.01752 0.94544 1.20803 0.82940 0.98524 0.93605 0.93718 1.45910 1.18330 1.17806 1.53895 1.20970 0.87831 0.81570 0.79716 1.90751 1.70063 1.44159 1.42032 1.21421 0.92359 0.98551 1.04518 1.22222 0.82041 0.97194 0.98219 1.87767 1.33805 1.33082 1.76008 1.23680 0.89867 0.89584 1.02968 1.20391 0.88550 0.73390 0.76885 1.93201 1.96067 1.95416 1.32064 1.93214 1.86742 1.42628 1.93267 1.93202 1.75236 1.60866 1.87332 1.22000 0.94930 1.00044 0.98694 0.93551 0.80626 0.94530 0.89308 0.95188 0.91246 0.93386 0.88822 0.74183 0.85201 0.85842 0.92318 0.91711 0.86709 0.86378 0.86867 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.74 13.97 21.65 0.30 -63.44 16 2 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.94 48.00 27.74 68.60 1.90 49.91 16 4 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 5 H -0.30 -15.34 7.11 99.48 0.71 -14.64 16 6 H -0.27 -13.09 6.52 99.48 0.65 -12.45 16 7 C -0.21 -12.05 10.41 84.03 0.87 -11.17 16 8 H 0.06 3.89 8.06 -2.91 -0.02 3.87 16 9 N -0.75 -34.11 4.08 -322.94 -1.32 -35.42 16 10 C 0.17 5.78 3.10 44.99 0.14 5.91 16 11 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 12 C -0.13 -3.92 5.61 30.59 0.17 -3.75 16 13 C -0.11 -3.34 5.77 30.59 0.18 -3.17 16 14 C -0.11 -2.77 5.49 30.59 0.17 -2.60 16 15 C 0.15 3.84 2.28 44.99 0.10 3.94 16 16 H 0.04 1.63 5.94 -2.39 -0.01 1.61 16 17 N -0.71 -13.06 5.08 -442.52 -2.25 -15.31 16 18 C 0.51 11.01 7.79 87.65 0.68 11.69 16 19 O -0.59 -18.99 15.65 -3.05 -0.05 -19.04 16 20 C -0.13 -1.64 6.07 29.85 0.18 -1.46 16 21 C 0.08 1.18 5.23 71.98 0.38 1.56 16 22 O -0.39 -5.58 10.23 -148.98 -1.52 -7.11 16 23 C 0.02 0.18 5.90 71.98 0.42 0.60 16 24 C 0.46 6.31 3.32 71.98 0.24 6.55 16 25 F -0.19 -3.14 17.26 44.97 0.78 -2.36 16 26 F -0.18 -2.42 17.32 44.97 0.78 -1.64 16 27 F -0.18 -3.01 17.26 44.97 0.78 -2.24 16 28 C -0.12 -2.86 5.08 30.60 0.16 -2.71 16 29 H 0.26 15.91 8.31 -92.71 -0.77 15.13 16 30 H 0.36 16.65 3.92 -92.70 -0.36 16.29 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.03 1.15 7.60 -2.39 -0.02 1.13 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.42 4.22 8.60 -92.71 -0.80 3.42 16 38 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 41 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 42 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -77.52 377.13 3.36 -74.16 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.20 Total: 20.29 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 4.16 Total: 2.20 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -3.26 Total: -114.18 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -1.57 Total: -26.14 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 2.33 Total: -6.24 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.90 Total: 49.91 kcal Total: -77.52 3.36 -74.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713374815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.312 kcal (2) G-P(sol) polarization free energy of solvation -77.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds