Wall clock time and date at job start Sat Apr 11 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99702 * 2 1 4 4 H 1.48499 * 109.47457 * 270.00227 * 3 2 1 5 5 H 1.48500 * 109.47220 * 30.00481 * 3 2 1 6 6 H 1.48500 * 109.47026 * 150.00253 * 3 2 1 7 7 C 1.38812 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00310 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99521 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99664 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47449 * 34.99864 * 10 9 7 12 12 C 1.52999 * 109.47118 * 275.00048 * 10 9 7 13 13 C 1.52997 * 109.47278 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47127 * 60.00039 * 13 12 10 15 15 C 1.52999 * 109.47010 * 300.00125 * 14 13 12 16 16 H 1.08995 * 109.47098 * 299.99700 * 15 14 13 17 17 N 1.46498 * 109.47257 * 179.97438 * 15 14 13 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 C 1.52990 * 109.47398 * 180.02562 * 20 18 17 22 22 O 1.42899 * 109.47438 * 179.97438 * 21 20 18 23 23 C 1.42898 * 114.00219 * 180.02562 * 22 21 20 24 24 C 1.53004 * 109.47033 * 180.02562 * 23 22 21 25 25 F 1.39897 * 109.47427 * 59.99489 * 24 23 22 26 26 F 1.39898 * 109.47225 * 179.97438 * 24 23 22 27 27 F 1.39905 * 109.46764 * 299.99829 * 24 23 22 28 28 C 1.52994 * 109.47118 * 155.00173 * 10 9 7 29 29 H 0.96991 * 120.00506 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00536 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47098 * 300.00174 * 12 10 9 32 32 H 1.09003 * 109.47054 * 59.99823 * 12 10 9 33 33 H 1.08996 * 109.47253 * 180.02562 * 13 12 10 34 34 H 1.09003 * 109.47446 * 299.99911 * 13 12 10 35 35 H 1.08996 * 109.47248 * 179.97438 * 14 13 12 36 36 H 1.08995 * 109.46945 * 59.99919 * 14 13 12 37 37 H 0.97001 * 120.00384 * 265.00562 * 17 15 14 38 38 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 39 39 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 40 40 H 1.08998 * 109.47508 * 300.00200 * 21 20 18 41 41 H 1.09011 * 109.47182 * 60.00188 * 21 20 18 42 42 H 1.08997 * 109.46950 * 299.99828 * 23 22 21 43 43 H 1.08994 * 109.47450 * 60.00063 * 23 22 21 44 44 H 1.08994 * 109.47599 * 59.99981 * 28 10 9 45 45 H 1.08998 * 109.47530 * 299.99672 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9690 -3.5506 0.5889 12 6 2.4221 -4.0356 -1.4375 13 6 3.1877 -5.3602 -1.4375 14 6 2.3110 -6.4559 -0.8277 15 6 1.9471 -6.0771 0.6093 16 1 2.8578 -5.9705 1.1986 17 7 1.1072 -7.1260 1.1930 18 6 1.6768 -8.2107 1.7546 19 8 2.8847 -8.3162 1.7812 20 6 0.8127 -9.2927 2.3495 21 6 1.7017 -10.4012 2.9166 22 8 0.8824 -11.4268 3.4813 23 6 1.6184 -12.5157 4.0423 24 6 0.6448 -13.5485 4.6138 25 9 -0.1843 -14.0233 3.5919 26 9 1.3653 -14.6148 5.1625 27 9 -0.1367 -12.9519 5.6091 28 6 1.1811 -4.7521 0.6090 29 1 -0.4850 0.8399 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 1.5115 -4.1418 -2.0270 32 1 3.0470 -3.2552 -1.8718 33 1 3.4473 -5.6298 -2.4612 34 1 4.0985 -5.2536 -0.8482 35 1 2.8563 -7.3997 -0.8281 36 1 1.4004 -6.5626 -1.4170 37 1 0.1411 -7.0417 1.1717 38 1 0.2027 -8.8720 3.1488 39 1 0.1644 -9.7059 1.5768 40 1 2.3121 -10.8220 2.1176 41 1 2.3497 -9.9876 3.6895 42 1 2.2269 -12.9807 3.2668 43 1 2.2646 -12.1457 4.8382 44 1 0.2704 -4.8584 0.0196 45 1 0.9218 -4.4824 1.6328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713374816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:31 Heat of formation + Delta-G solvation = -246.981780 kcal Electronic energy + Delta-G solvation = -28773.316899 eV Core-core repulsion = 23989.266351 eV Total energy + Delta-G solvation = -4784.050549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.53956 -48.10279 -47.99046 -40.20792 -38.74236 -37.93184 -34.75476 -33.43233 -32.54693 -31.15815 -30.04032 -29.05705 -27.78268 -24.44382 -23.77068 -23.68037 -22.02122 -21.26964 -20.38561 -19.43918 -19.10434 -19.07925 -18.25911 -17.56882 -17.05178 -16.82516 -16.28943 -16.14891 -15.40879 -14.92019 -14.83952 -14.76070 -14.45944 -14.42544 -14.32639 -14.17439 -14.16654 -13.98818 -13.74612 -13.64053 -13.37438 -13.15885 -12.72199 -12.27549 -12.15737 -12.13119 -11.91621 -11.84587 -11.02661 -10.99244 -10.89419 -10.76566 -10.42421 -10.38331 -10.34716 -10.22032 -10.12765 -9.75205 -9.62336 -9.06294 -8.89221 -6.98834 -5.79236 -3.08009 1.91611 2.46285 2.64427 3.18167 3.37146 3.42043 3.47611 3.48862 3.49883 3.98671 4.34963 4.46642 4.47336 4.55686 4.59428 4.75112 4.94138 5.02142 5.07849 5.27169 5.29250 5.35912 5.47122 5.56503 5.64908 5.70483 5.83008 5.93176 5.98450 6.09801 6.25151 6.25841 6.28500 6.47015 6.49144 6.57761 6.69091 6.93263 7.09048 7.38850 7.68578 8.06810 8.39437 9.50674 10.07658 10.42371 11.43422 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.001613 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.015738 B =17350.461558 C =17864.974785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.048 0.952 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.124 4.124 15 C 0.148 3.852 16 H 0.088 0.912 17 N -0.720 5.720 18 C 0.518 3.482 19 O -0.545 6.545 20 C -0.142 4.142 21 C 0.080 3.920 22 O -0.377 6.377 23 C 0.021 3.979 24 C 0.462 3.538 25 F -0.176 7.176 26 F -0.177 7.177 27 F -0.175 7.175 28 C -0.129 4.129 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.401 0.599 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -27.934 6.202 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.044 3.956 16 H 0.106 0.894 17 N -0.370 5.370 18 C 0.304 3.696 19 O -0.423 6.423 20 C -0.182 4.182 21 C 0.004 3.996 22 O -0.296 6.296 23 C -0.058 4.058 24 C 0.407 3.593 25 F -0.157 7.157 26 F -0.159 7.159 27 F -0.157 7.157 28 C -0.168 4.168 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.236 0.764 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.123 -27.840 6.264 28.615 hybrid contribution -0.322 0.813 -0.019 0.875 sum 1.801 -27.028 6.245 27.798 Atomic orbital electron populations 1.69655 1.05096 1.25656 1.57786 1.24740 0.95520 0.97689 1.03041 0.86200 0.78675 0.83873 0.77514 1.21741 1.21803 1.20758 1.19245 0.91028 0.84064 1.42570 0.91137 1.42399 1.05736 0.99694 1.88621 1.20099 0.94108 0.85554 0.92975 0.93373 1.22294 0.99725 0.95235 1.00490 1.21486 0.98514 0.95384 0.99960 1.21877 1.00132 0.98813 0.95401 1.21071 0.94472 0.86078 0.93988 0.89403 1.46149 1.10724 1.20936 1.59229 1.20252 0.88670 0.82788 0.77920 1.90722 1.14699 1.78487 1.58354 1.21480 0.99284 0.94557 1.02883 1.22276 0.92362 0.86956 0.98044 1.87823 1.33331 1.30914 1.77536 1.23486 0.92638 0.88554 1.01132 1.20190 0.81044 0.81589 0.76454 1.93222 1.73929 1.89403 1.59178 1.93215 1.77844 1.58486 1.86331 1.93228 1.76495 1.83285 1.62674 1.22102 0.99357 0.93312 1.02064 0.93532 0.78331 0.92647 0.91877 0.92496 0.92184 0.92235 0.92034 0.76443 0.87643 0.87727 0.91487 0.91428 0.88397 0.88352 0.91651 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.48 5.12 -53.42 -0.27 -17.76 16 10 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 C -0.14 -2.34 5.50 -26.73 -0.15 -2.48 16 13 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 14 C -0.12 -1.57 5.49 -26.73 -0.15 -1.71 16 15 C 0.15 1.93 2.45 -67.90 -0.17 1.76 16 16 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 17 N -0.72 -7.44 5.08 -53.78 -0.27 -7.71 16 18 C 0.52 5.54 7.79 -10.98 -0.09 5.46 16 19 O -0.54 -7.81 15.65 5.55 0.09 -7.72 16 20 C -0.14 -1.04 6.07 -27.89 -0.17 -1.21 16 21 C 0.08 0.60 5.23 37.15 0.19 0.79 16 22 O -0.38 -2.92 10.23 -35.23 -0.36 -3.28 16 23 C 0.02 0.11 5.90 37.16 0.22 0.33 16 24 C 0.46 3.26 3.32 37.16 0.12 3.39 16 25 F -0.18 -1.50 17.26 2.25 0.04 -1.46 16 26 F -0.18 -1.23 17.32 2.25 0.04 -1.19 16 27 F -0.18 -1.52 17.26 2.25 0.04 -1.48 16 28 C -0.13 -1.94 4.86 -26.71 -0.13 -2.07 16 29 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.40 3.17 8.60 -40.82 -0.35 2.82 16 38 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.50 8.10 -51.93 -0.42 0.07 16 41 H 0.07 0.51 8.10 -51.92 -0.42 0.09 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -32.21 384.68 -7.05 -39.26 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.94 Total: 6.75 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -0.90 Total: -1.34 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.18 Total: -52.46 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.27 Total: -11.00 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.12 Total: -4.13 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.21 -7.05 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713374816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.725 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds