Wall clock time and date at job start Sat Apr 11 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99702 * 2 1 4 4 H 1.48499 * 109.47457 * 270.00227 * 3 2 1 5 5 H 1.48500 * 109.47220 * 30.00481 * 3 2 1 6 6 H 1.48500 * 109.47026 * 150.00253 * 3 2 1 7 7 C 1.38812 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00310 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99521 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99664 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47449 * 34.99864 * 10 9 7 12 12 C 1.52999 * 109.47118 * 275.00048 * 10 9 7 13 13 C 1.52997 * 109.47278 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47127 * 60.00039 * 13 12 10 15 15 C 1.52999 * 109.47010 * 300.00125 * 14 13 12 16 16 H 1.08995 * 109.47098 * 299.99700 * 15 14 13 17 17 N 1.46498 * 109.47257 * 179.97438 * 15 14 13 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 C 1.52990 * 109.47398 * 180.02562 * 20 18 17 22 22 O 1.42899 * 109.47438 * 179.97438 * 21 20 18 23 23 C 1.42898 * 114.00219 * 180.02562 * 22 21 20 24 24 C 1.53004 * 109.47033 * 180.02562 * 23 22 21 25 25 F 1.39897 * 109.47427 * 59.99489 * 24 23 22 26 26 F 1.39898 * 109.47225 * 179.97438 * 24 23 22 27 27 F 1.39905 * 109.46764 * 299.99829 * 24 23 22 28 28 C 1.52994 * 109.47118 * 155.00173 * 10 9 7 29 29 H 0.96991 * 120.00506 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00536 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47098 * 300.00174 * 12 10 9 32 32 H 1.09003 * 109.47054 * 59.99823 * 12 10 9 33 33 H 1.08996 * 109.47253 * 180.02562 * 13 12 10 34 34 H 1.09003 * 109.47446 * 299.99911 * 13 12 10 35 35 H 1.08996 * 109.47248 * 179.97438 * 14 13 12 36 36 H 1.08995 * 109.46945 * 59.99919 * 14 13 12 37 37 H 0.97001 * 120.00384 * 265.00562 * 17 15 14 38 38 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 39 39 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 40 40 H 1.08998 * 109.47508 * 300.00200 * 21 20 18 41 41 H 1.09011 * 109.47182 * 60.00188 * 21 20 18 42 42 H 1.08997 * 109.46950 * 299.99828 * 23 22 21 43 43 H 1.08994 * 109.47450 * 60.00063 * 23 22 21 44 44 H 1.08994 * 109.47599 * 59.99981 * 28 10 9 45 45 H 1.08998 * 109.47530 * 299.99672 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9690 -3.5506 0.5889 12 6 2.4221 -4.0356 -1.4375 13 6 3.1877 -5.3602 -1.4375 14 6 2.3110 -6.4559 -0.8277 15 6 1.9471 -6.0771 0.6093 16 1 2.8578 -5.9705 1.1986 17 7 1.1072 -7.1260 1.1930 18 6 1.6768 -8.2107 1.7546 19 8 2.8847 -8.3162 1.7812 20 6 0.8127 -9.2927 2.3495 21 6 1.7017 -10.4012 2.9166 22 8 0.8824 -11.4268 3.4813 23 6 1.6184 -12.5157 4.0423 24 6 0.6448 -13.5485 4.6138 25 9 -0.1843 -14.0233 3.5919 26 9 1.3653 -14.6148 5.1625 27 9 -0.1367 -12.9519 5.6091 28 6 1.1811 -4.7521 0.6090 29 1 -0.4850 0.8399 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 1.5115 -4.1418 -2.0270 32 1 3.0470 -3.2552 -1.8718 33 1 3.4473 -5.6298 -2.4612 34 1 4.0985 -5.2536 -0.8482 35 1 2.8563 -7.3997 -0.8281 36 1 1.4004 -6.5626 -1.4170 37 1 0.1411 -7.0417 1.1717 38 1 0.2027 -8.8720 3.1488 39 1 0.1644 -9.7059 1.5768 40 1 2.3121 -10.8220 2.1176 41 1 2.3497 -9.9876 3.6895 42 1 2.2269 -12.9807 3.2668 43 1 2.2646 -12.1457 4.8382 44 1 0.2704 -4.8584 0.0196 45 1 0.9218 -4.4824 1.6328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713374816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:31 Heat of formation + Delta-G solvation = -268.478515 kcal Electronic energy + Delta-G solvation = -28774.249068 eV Core-core repulsion = 23989.266351 eV Total energy + Delta-G solvation = -4784.982717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.11307 -48.66731 -48.59984 -41.13780 -39.53930 -38.92612 -36.23157 -34.81140 -33.26604 -32.85991 -30.87184 -30.05468 -29.25621 -25.73456 -25.06328 -24.26283 -23.21423 -22.48611 -21.35871 -20.72898 -19.67498 -19.64533 -19.19834 -18.77804 -18.15128 -17.44475 -17.37357 -16.85413 -16.42404 -16.14411 -15.83015 -15.50256 -15.44944 -15.33664 -15.12095 -15.06554 -15.04186 -14.84383 -14.77820 -14.76431 -14.56414 -14.21148 -14.03306 -13.52048 -13.39187 -12.91203 -12.81049 -12.74310 -12.49071 -12.37234 -12.26234 -12.14726 -12.02638 -11.96438 -11.63481 -11.48544 -11.36580 -10.91817 -10.87681 -10.81050 -10.02633 -8.99124 -7.93630 -5.21261 1.39349 1.47790 1.48499 1.56863 1.63406 2.00054 2.48044 2.57873 2.85115 3.00053 3.39627 3.44137 3.64357 3.72617 3.87958 4.03377 4.04876 4.10732 4.13033 4.15175 4.30210 4.33059 4.45094 4.52078 4.55609 4.59414 4.68891 4.77202 4.78118 4.83112 5.04583 5.14767 5.18961 5.23959 5.36761 5.50348 5.51239 5.55219 5.67303 5.76177 6.29277 6.57631 7.25556 7.35567 8.11751 8.35128 9.29625 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.001613 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.015738 B =17350.461558 C =17864.974785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.968 3.032 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.237 4.237 8 H 0.072 0.928 9 N -0.736 5.736 10 C 0.176 3.824 11 H 0.035 0.965 12 C -0.127 4.127 13 C -0.107 4.107 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.069 0.931 17 N -0.713 5.713 18 C 0.518 3.482 19 O -0.583 6.583 20 C -0.134 4.134 21 C 0.081 3.919 22 O -0.391 6.391 23 C 0.019 3.981 24 C 0.460 3.540 25 F -0.186 7.186 26 F -0.177 7.177 27 F -0.187 7.187 28 C -0.115 4.115 29 H 0.250 0.750 30 H 0.374 0.626 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.416 0.584 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.075 0.925 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 -29.433 6.063 30.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.798 3.202 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.197 1.197 7 C -0.369 4.369 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.067 3.933 11 H 0.054 0.946 12 C -0.167 4.167 13 C -0.146 4.146 14 C -0.154 4.154 15 C 0.053 3.947 16 H 0.087 0.913 17 N -0.364 5.364 18 C 0.306 3.694 19 O -0.463 6.463 20 C -0.173 4.173 21 C 0.005 3.995 22 O -0.310 6.310 23 C -0.059 4.059 24 C 0.406 3.594 25 F -0.168 7.168 26 F -0.159 7.159 27 F -0.168 7.168 28 C -0.154 4.154 29 H 0.059 0.941 30 H 0.206 0.794 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.253 0.747 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.094 0.906 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.491 -29.386 6.126 30.121 hybrid contribution -0.401 1.188 0.050 1.255 sum 2.090 -28.198 6.176 28.942 Atomic orbital electron populations 1.69797 1.06418 1.25923 1.59746 1.25492 0.96367 1.00840 1.04043 0.85212 0.77729 0.79917 0.77361 1.21537 1.22254 1.19673 1.19587 0.91321 0.85345 1.40661 0.90985 1.42577 1.05446 1.00805 1.88700 1.20326 0.93888 0.84810 0.94278 0.94649 1.22099 0.99617 0.96459 0.98544 1.21416 0.98113 0.93773 1.01269 1.21805 1.00429 0.98278 0.94908 1.20742 0.93752 0.85826 0.94357 0.91298 1.45990 1.11274 1.20226 1.58890 1.20792 0.88461 0.83049 0.77082 1.90711 1.16551 1.79278 1.59763 1.21442 0.98798 0.93395 1.03700 1.22225 0.92270 0.87006 0.97975 1.87779 1.34041 1.31426 1.77788 1.23674 0.92128 0.87766 1.02361 1.20454 0.81009 0.81905 0.76018 1.93199 1.74402 1.89602 1.59567 1.93212 1.77708 1.58600 1.86335 1.93203 1.76961 1.83465 1.63216 1.21884 0.99110 0.93092 1.01316 0.94099 0.79434 0.92837 0.94165 0.90684 0.92387 0.91784 0.90778 0.74742 0.86181 0.85735 0.91452 0.91820 0.86287 0.86465 0.90630 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 2 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 3 Si 0.97 45.92 29.55 68.60 2.03 47.94 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.24 -13.00 9.93 84.03 0.83 -12.17 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 9 N -0.74 -35.95 5.12 -322.93 -1.65 -37.60 16 10 C 0.18 6.61 2.77 44.99 0.12 6.74 16 11 H 0.04 1.42 8.08 -2.39 -0.02 1.40 16 12 C -0.13 -4.26 5.50 30.59 0.17 -4.09 16 13 C -0.11 -2.77 5.92 30.59 0.18 -2.59 16 14 C -0.12 -2.67 5.49 30.60 0.17 -2.50 16 15 C 0.16 3.89 2.45 45.01 0.11 4.00 16 16 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 17 N -0.71 -13.17 5.08 -442.45 -2.25 -15.42 16 18 C 0.52 10.05 7.79 87.66 0.68 10.73 16 19 O -0.58 -15.93 15.65 -3.04 -0.05 -15.98 16 20 C -0.13 -1.60 6.07 29.85 0.18 -1.42 16 21 C 0.08 1.05 5.23 71.98 0.38 1.43 16 22 O -0.39 -5.23 10.23 -148.98 -1.52 -6.76 16 23 C 0.02 0.17 5.90 71.98 0.42 0.59 16 24 C 0.46 5.92 3.32 71.98 0.24 6.16 16 25 F -0.19 -2.98 17.26 44.97 0.78 -2.20 16 26 F -0.18 -2.25 17.32 44.97 0.78 -1.47 16 27 F -0.19 -3.06 17.26 44.97 0.78 -2.28 16 28 C -0.12 -3.35 4.86 30.61 0.15 -3.21 16 29 H 0.25 14.68 8.31 -92.72 -0.77 13.91 16 30 H 0.37 19.43 7.80 -92.71 -0.72 18.71 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.42 5.42 8.60 -92.71 -0.80 4.63 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 41 H 0.06 0.86 8.10 -2.38 -0.02 0.84 16 42 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -69.70 384.68 2.77 -66.92 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.50 Total: 25.07 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 4.11 Total: -0.15 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -3.62 Total: -111.10 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -1.57 Total: -22.74 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 2.33 Total: -5.95 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -69.70 2.77 -66.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713374816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.555 kcal (2) G-P(sol) polarization free energy of solvation -69.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds