Wall clock time and date at job start Sat Apr 11 2020 05:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99643 * 2 1 4 4 H 1.48505 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47584 * 300.00587 * 3 2 1 6 6 H 1.48507 * 109.47170 * 60.00375 * 3 2 1 7 7 C 1.38808 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99671 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00277 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00202 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47038 * 324.99815 * 10 9 7 12 12 C 1.52999 * 109.47322 * 84.99803 * 10 9 7 13 13 C 1.53004 * 109.47083 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47038 * 299.99966 * 13 12 10 15 15 C 1.52999 * 109.47156 * 60.00078 * 14 13 12 16 16 H 1.08995 * 109.47098 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47257 * 59.99882 * 15 14 13 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 C 1.52990 * 109.47398 * 180.02562 * 20 18 17 22 22 O 1.42899 * 109.47438 * 179.97438 * 21 20 18 23 23 C 1.42898 * 114.00219 * 180.02562 * 22 21 20 24 24 C 1.53004 * 109.47033 * 180.02562 * 23 22 21 25 25 F 1.39897 * 109.47427 * 59.99489 * 24 23 22 26 26 F 1.39898 * 109.47225 * 179.97438 * 24 23 22 27 27 F 1.39905 * 109.46764 * 299.99829 * 24 23 22 28 28 C 1.52999 * 109.47161 * 204.99991 * 10 9 7 29 29 H 0.97002 * 120.00427 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99865 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47074 * 60.00293 * 12 10 9 32 32 H 1.08995 * 109.47098 * 300.00373 * 12 10 9 33 33 H 1.08998 * 109.46617 * 180.02562 * 13 12 10 34 34 H 1.08994 * 109.47168 * 60.00055 * 13 12 10 35 35 H 1.09003 * 109.47002 * 300.00215 * 14 13 12 36 36 H 1.08996 * 109.47008 * 180.02562 * 14 13 12 37 37 H 0.97001 * 120.00384 * 265.00562 * 17 15 14 38 38 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 39 39 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 40 40 H 1.08998 * 109.47508 * 300.00200 * 21 20 18 41 41 H 1.09011 * 109.47182 * 60.00188 * 21 20 18 42 42 H 1.08997 * 109.46950 * 299.99828 * 23 22 21 43 43 H 1.08994 * 109.47450 * 60.00063 * 23 22 21 44 44 H 1.08998 * 109.47115 * 60.00306 * 28 10 9 45 45 H 1.08994 * 109.47213 * 299.99693 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8912 2.3966 -1.2124 6 1 1.8913 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 -0.5900 12 6 2.4221 -4.0355 1.4364 13 6 3.1877 -5.3602 1.4363 14 6 2.3110 -6.4559 0.8265 15 6 1.9471 -6.0771 -0.6105 16 1 1.3229 -6.8578 -1.0450 17 7 3.1710 -5.9336 -1.4026 18 6 3.7412 -7.0180 -1.9643 19 8 3.2381 -8.1119 -1.8182 20 6 5.0037 -6.8715 -2.7740 21 6 5.4375 -8.2429 -3.2951 22 8 6.6343 -8.1039 -4.0634 23 6 7.1268 -9.3334 -4.5999 24 6 8.4041 -9.0659 -5.3987 25 9 9.3706 -8.5035 -4.5581 26 9 8.8866 -10.2697 -5.9234 27 9 8.1232 -8.1801 -6.4445 28 6 1.1810 -4.7521 -0.6102 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 1.5115 -4.1418 2.0259 32 1 3.0470 -3.2552 1.8707 33 1 3.4466 -5.6303 2.4601 34 1 4.0984 -5.2535 0.8470 35 1 1.4003 -6.5626 1.4159 36 1 2.8562 -7.3997 0.8268 37 1 3.5734 -5.0588 -1.5195 38 1 4.8197 -6.2046 -3.6163 39 1 5.7916 -6.4551 -2.1463 40 1 5.6213 -8.9102 -2.4531 41 1 4.6494 -8.6589 -3.9230 42 1 7.3460 -10.0233 -3.7851 43 1 6.3736 -9.7717 -5.2545 44 1 0.9218 -4.4822 -1.6339 45 1 0.2704 -4.8584 -0.0207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713374817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:34 Heat of formation + Delta-G solvation = -244.293077 kcal Electronic energy + Delta-G solvation = -29317.529009 eV Core-core repulsion = 24533.595052 eV Total energy + Delta-G solvation = -4783.933958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.48814 -48.05362 -47.93546 -40.27915 -38.74876 -37.90759 -34.54347 -33.19469 -32.42868 -31.19497 -30.07057 -29.17765 -27.89805 -24.40459 -23.74034 -23.67614 -22.11401 -21.15590 -20.73752 -19.08164 -19.02552 -18.87318 -18.23205 -17.52491 -17.19629 -16.76523 -16.22989 -15.60459 -15.52866 -15.13795 -14.85987 -14.75895 -14.46585 -14.40580 -14.28289 -14.12740 -14.11323 -14.04527 -13.77557 -13.45416 -13.33025 -13.09302 -12.50836 -12.22814 -12.13523 -11.90550 -11.85595 -11.79066 -11.72882 -11.04295 -10.93161 -10.82913 -10.43711 -10.34923 -10.23425 -10.19184 -9.94905 -9.79348 -9.57400 -9.01761 -8.89963 -7.01739 -5.82020 -3.11178 1.97263 2.54246 2.71568 3.26539 3.39417 3.44060 3.45242 3.47438 3.54878 4.04853 4.42775 4.51894 4.52272 4.53131 4.67001 4.82145 4.99937 5.04562 5.12325 5.13811 5.38272 5.43901 5.45006 5.53262 5.64080 5.71427 5.81611 5.92280 6.00848 6.05109 6.19501 6.23851 6.32569 6.44383 6.51539 6.59092 6.66420 6.88896 7.03437 7.49059 7.64624 8.14802 8.36268 9.47705 10.04862 10.39061 11.40530 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.002069 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.675541 B =13530.279156 C =14902.646256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.181 3.819 11 H 0.042 0.958 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.127 4.127 15 C 0.151 3.849 16 H 0.084 0.916 17 N -0.714 5.714 18 C 0.519 3.481 19 O -0.551 6.551 20 C -0.144 4.144 21 C 0.081 3.919 22 O -0.376 6.376 23 C 0.021 3.979 24 C 0.461 3.539 25 F -0.175 7.175 26 F -0.178 7.178 27 F -0.175 7.175 28 C -0.134 4.134 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.405 0.595 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.988 -21.123 -7.377 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.070 3.930 11 H 0.060 0.940 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.166 4.166 15 C 0.047 3.953 16 H 0.102 0.898 17 N -0.366 5.366 18 C 0.305 3.695 19 O -0.430 6.430 20 C -0.184 4.184 21 C 0.005 3.995 22 O -0.295 6.295 23 C -0.058 4.058 24 C 0.407 3.593 25 F -0.157 7.157 26 F -0.159 7.159 27 F -0.157 7.157 28 C -0.173 4.173 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.088 0.912 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.844 -21.538 -7.329 26.126 hybrid contribution 0.430 1.274 -0.033 1.346 sum 13.274 -20.263 -7.362 25.318 Atomic orbital electron populations 1.69666 1.05113 1.25591 1.57629 1.24747 0.95510 0.97725 1.02972 0.86146 0.78788 0.84204 0.77207 1.20551 1.21868 1.21893 1.19253 0.90958 0.84077 1.42719 0.91167 1.42430 1.05802 0.99706 1.88578 1.20147 0.93903 0.85983 0.92931 0.94047 1.22293 0.99802 0.95187 1.00499 1.21505 0.98452 0.95633 0.99755 1.21897 1.00624 0.98541 0.95519 1.20981 0.85111 0.98409 0.90834 0.89795 1.46195 1.27912 1.10375 1.52101 1.20232 0.85305 0.84570 0.79383 1.90696 1.64582 1.25972 1.61721 1.21487 0.96705 0.98619 1.01557 1.22265 0.85136 0.97234 0.94862 1.87839 1.43712 1.27644 1.70329 1.23478 0.93187 0.89778 0.99349 1.20195 0.86131 0.74200 0.78779 1.93225 1.66182 1.85415 1.70870 1.93211 1.89411 1.45867 1.87441 1.93229 1.93517 1.69301 1.59617 1.22142 0.99300 0.93539 1.02279 0.93534 0.78247 0.92548 0.92049 0.92847 0.92630 0.91128 0.92134 0.75817 0.87587 0.87647 0.91546 0.91525 0.88442 0.88415 0.91191 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 9 N -0.72 -17.02 5.12 -53.43 -0.27 -17.30 16 10 C 0.18 3.20 2.60 -67.93 -0.18 3.02 16 11 H 0.04 0.72 6.44 -51.93 -0.33 0.39 16 12 C -0.14 -2.26 5.50 -26.73 -0.15 -2.41 16 13 C -0.12 -1.51 5.77 -26.73 -0.15 -1.67 16 14 C -0.13 -1.59 5.60 -26.73 -0.15 -1.74 16 15 C 0.15 1.94 2.78 -67.91 -0.19 1.75 16 16 H 0.08 1.12 7.58 -51.93 -0.39 0.73 16 17 N -0.71 -8.24 4.23 -53.78 -0.23 -8.47 16 18 C 0.52 5.93 7.79 -10.98 -0.09 5.85 16 19 O -0.55 -7.93 15.65 5.55 0.09 -7.84 16 20 C -0.14 -1.22 6.07 -27.89 -0.17 -1.39 16 21 C 0.08 0.67 5.23 37.15 0.19 0.86 16 22 O -0.38 -3.22 10.23 -35.23 -0.36 -3.58 16 23 C 0.02 0.13 5.90 37.16 0.22 0.34 16 24 C 0.46 3.56 3.32 37.16 0.12 3.68 16 25 F -0.18 -1.63 17.26 2.25 0.04 -1.59 16 26 F -0.18 -1.32 17.32 2.25 0.04 -1.28 16 27 F -0.18 -1.64 17.26 2.25 0.04 -1.60 16 28 C -0.13 -1.99 5.08 -26.71 -0.14 -2.12 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.38 9.71 7.80 -40.82 -0.32 9.39 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.70 7.60 -51.93 -0.39 0.31 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.41 4.42 6.87 -40.82 -0.28 4.14 16 38 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 41 H 0.07 0.54 8.10 -51.92 -0.42 0.12 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -31.35 380.25 -6.90 -38.26 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.76 Total: 8.34 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -0.92 Total: -0.76 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.22 Total: -52.48 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.27 Total: -11.42 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.12 Total: -4.47 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.35 -6.90 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713374817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.037 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds