Wall clock time and date at job start Sat Apr 11 2020 05:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99815 * 2 1 4 4 H 1.48495 * 109.47000 * 269.99610 * 3 2 1 5 5 H 1.48493 * 109.47395 * 29.99945 * 3 2 1 6 6 H 1.48500 * 109.47057 * 150.00016 * 3 2 1 7 7 C 1.38819 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99515 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00251 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00169 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47041 * 325.00297 * 10 9 7 12 12 C 1.52998 * 109.46789 * 85.00281 * 10 9 7 13 13 C 1.53002 * 109.46895 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47559 * 299.99928 * 13 12 10 15 15 C 1.53004 * 109.47169 * 59.99650 * 14 13 12 16 16 H 1.09006 * 109.46835 * 60.00187 * 15 14 13 17 17 N 1.46493 * 109.47516 * 180.02562 * 15 14 13 18 18 C 1.34779 * 119.99963 * 275.00262 * 17 15 14 19 19 O 1.21287 * 119.99919 * 0.02562 * 18 17 15 20 20 C 1.50697 * 119.99954 * 179.97438 * 18 17 15 21 21 C 1.53009 * 109.47158 * 179.97438 * 20 18 17 22 22 O 1.42899 * 109.47113 * 180.02562 * 21 20 18 23 23 C 1.42903 * 113.99629 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.46726 * 180.02562 * 23 22 21 25 25 F 1.39895 * 109.47411 * 59.99737 * 24 23 22 26 26 F 1.39898 * 109.46890 * 180.02562 * 24 23 22 27 27 F 1.39904 * 109.47059 * 299.99479 * 24 23 22 28 28 C 1.53002 * 109.47166 * 300.00590 * 15 14 13 29 29 H 0.96996 * 120.00521 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99623 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47436 * 299.99598 * 12 10 9 32 32 H 1.08996 * 109.47317 * 60.00184 * 12 10 9 33 33 H 1.09006 * 109.46914 * 60.00028 * 13 12 10 34 34 H 1.08999 * 109.47296 * 179.97438 * 13 12 10 35 35 H 1.09006 * 109.47089 * 299.99992 * 14 13 12 36 36 H 1.08991 * 109.47667 * 180.02562 * 14 13 12 37 37 H 0.96995 * 120.00307 * 94.99670 * 17 15 14 38 38 H 1.08997 * 109.47397 * 60.00544 * 20 18 17 39 39 H 1.08998 * 109.47229 * 299.99586 * 20 18 17 40 40 H 1.09007 * 109.46516 * 60.00039 * 21 20 18 41 41 H 1.09004 * 109.47113 * 300.00507 * 21 20 18 42 42 H 1.09002 * 109.47382 * 59.99956 * 23 22 21 43 43 H 1.09001 * 109.46938 * 299.99942 * 23 22 21 44 44 H 1.08999 * 109.47296 * 179.97438 * 28 15 14 45 45 H 1.08996 * 109.46969 * 299.99582 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0463 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9688 -3.5505 -0.5888 12 6 2.4219 -4.0355 1.4376 13 6 3.1864 -5.3609 1.4376 14 6 2.3088 -6.4560 0.8282 15 6 1.9449 -6.0772 -0.6088 16 1 2.8556 -5.9714 -1.1984 17 7 1.1041 -7.1254 -1.1922 18 6 1.6728 -8.2081 -1.7587 19 8 2.8807 -8.3148 -1.7850 20 6 0.8078 -9.2867 -2.3583 21 6 1.6960 -10.3935 -2.9305 22 8 0.8758 -11.4159 -3.4996 23 6 1.6110 -12.5034 -4.0645 24 6 0.6367 -13.5322 -4.6417 25 9 -0.1429 -12.9303 -5.6351 26 9 1.3563 -14.5971 -5.1942 27 9 -0.1942 -14.0105 -3.6227 28 6 1.1804 -4.7519 -0.6089 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 3.0468 -3.2553 1.8719 32 1 1.5112 -4.1418 2.0269 33 1 4.0971 -5.2550 0.8481 34 1 3.4460 -5.6306 2.4613 35 1 1.3980 -6.5619 1.4178 36 1 2.8532 -7.4002 0.8287 37 1 0.1381 -7.0404 -1.1708 38 1 0.1981 -8.8621 -3.1557 39 1 0.1594 -9.7029 -1.5874 40 1 2.3061 -10.8182 -2.1332 41 1 2.3443 -9.9770 -3.7015 42 1 2.2187 -12.9722 -3.2905 43 1 2.2580 -12.1308 -4.8587 44 1 0.9215 -4.4818 -1.6327 45 1 0.2697 -4.8577 -0.0194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713374818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:37 Heat of formation + Delta-G solvation = -246.984563 kcal Electronic energy + Delta-G solvation = -28773.594409 eV Core-core repulsion = 23989.543739 eV Total energy + Delta-G solvation = -4784.050669 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.53968 -48.10252 -47.99077 -40.20765 -38.74199 -37.93249 -34.75553 -33.43286 -32.54606 -31.15907 -30.04075 -29.05773 -27.78257 -24.44348 -23.77034 -23.68005 -22.02027 -21.26870 -20.38723 -19.43869 -19.10419 -19.07919 -18.25876 -17.56869 -17.05165 -16.82468 -16.28947 -16.14897 -15.40875 -14.91998 -14.83990 -14.76026 -14.45930 -14.42599 -14.32616 -14.17435 -14.16635 -13.98745 -13.74554 -13.63984 -13.37443 -13.15939 -12.72073 -12.27596 -12.15758 -12.13106 -11.91654 -11.84587 -11.02073 -10.99093 -10.90526 -10.76346 -10.42343 -10.37610 -10.35220 -10.21668 -10.13081 -9.75015 -9.62399 -9.06297 -8.89390 -6.98874 -5.79259 -3.07955 1.91658 2.46257 2.64442 3.18186 3.37153 3.42021 3.47582 3.48833 3.49902 3.98671 4.34927 4.46663 4.47305 4.55693 4.59478 4.75118 4.94165 5.02179 5.07869 5.27221 5.29318 5.35928 5.47175 5.56502 5.65016 5.70456 5.83023 5.93277 5.98488 6.09840 6.25137 6.25830 6.28493 6.47051 6.49189 6.57825 6.69184 6.93380 7.09120 7.38847 7.68581 8.06801 8.39391 9.50652 10.07695 10.42386 11.43413 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.001614 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.126214 B =17338.952806 C =17858.110270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.048 0.952 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.123 4.123 15 C 0.148 3.852 16 H 0.088 0.912 17 N -0.720 5.720 18 C 0.518 3.482 19 O -0.545 6.545 20 C -0.142 4.142 21 C 0.080 3.920 22 O -0.377 6.377 23 C 0.020 3.980 24 C 0.462 3.538 25 F -0.175 7.175 26 F -0.177 7.177 27 F -0.176 7.176 28 C -0.130 4.130 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.401 0.599 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.347 -27.913 -6.196 28.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.044 3.956 16 H 0.106 0.894 17 N -0.370 5.370 18 C 0.304 3.696 19 O -0.423 6.423 20 C -0.182 4.182 21 C 0.004 3.996 22 O -0.296 6.296 23 C -0.058 4.058 24 C 0.407 3.593 25 F -0.157 7.157 26 F -0.159 7.159 27 F -0.157 7.157 28 C -0.169 4.169 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.236 0.764 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.087 0.913 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.108 -27.821 -6.236 28.589 hybrid contribution -0.322 0.816 -0.011 0.877 sum 1.786 -27.005 -6.247 27.776 Atomic orbital electron populations 1.69653 1.05101 1.25655 1.57778 1.24739 0.95518 0.97688 1.03043 0.86199 0.78672 0.83875 0.77513 1.21748 1.21800 1.20759 1.19245 0.91028 0.84066 1.42578 0.91140 1.42395 1.05738 0.99696 1.88620 1.20098 0.94097 0.85551 0.92980 0.93378 1.22293 0.99732 0.95225 1.00485 1.21487 0.98513 0.95388 0.99962 1.21876 1.00127 0.98810 0.95394 1.21062 0.94458 0.86087 0.94006 0.89406 1.46146 1.10721 1.21087 1.59081 1.20253 0.88675 0.82767 0.77936 1.90723 1.14709 1.78344 1.58487 1.21481 0.99282 0.94614 1.02825 1.22280 0.92350 0.87045 0.97969 1.87825 1.33332 1.31180 1.77265 1.23489 0.92642 0.88632 1.01053 1.20188 0.81055 0.81530 0.76501 1.93225 1.76596 1.83053 1.62802 1.93215 1.77886 1.58582 1.86195 1.93224 1.73838 1.89290 1.59385 1.22098 0.99376 0.93315 1.02062 0.93532 0.78330 0.91866 0.92652 0.92188 0.92495 0.92033 0.92235 0.76444 0.87643 0.87724 0.91485 0.91428 0.88385 0.88360 0.91280 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.48 5.12 -53.43 -0.27 -17.76 16 10 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 C -0.14 -2.34 5.50 -26.73 -0.15 -2.48 16 13 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 14 C -0.12 -1.57 5.50 -26.73 -0.15 -1.71 16 15 C 0.15 1.93 2.45 -67.93 -0.17 1.76 16 16 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 17 N -0.72 -7.44 5.08 -53.80 -0.27 -7.71 16 18 C 0.52 5.55 7.79 -10.99 -0.09 5.46 16 19 O -0.54 -7.81 15.65 5.55 0.09 -7.73 16 20 C -0.14 -1.04 6.07 -27.88 -0.17 -1.21 16 21 C 0.08 0.60 5.23 37.16 0.19 0.79 16 22 O -0.38 -2.92 10.23 -35.23 -0.36 -3.28 16 23 C 0.02 0.11 5.90 37.16 0.22 0.33 16 24 C 0.46 3.26 3.32 37.16 0.12 3.39 16 25 F -0.18 -1.51 17.26 2.25 0.04 -1.48 16 26 F -0.18 -1.23 17.32 2.25 0.04 -1.19 16 27 F -0.18 -1.50 17.26 2.25 0.04 -1.46 16 28 C -0.13 -1.95 4.86 -26.73 -0.13 -2.07 16 29 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.40 3.17 8.60 -40.82 -0.35 2.82 16 38 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 41 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -32.21 384.68 -7.05 -39.26 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.94 Total: 6.75 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -0.90 Total: -1.34 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.18 Total: -52.46 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.27 Total: -11.01 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.12 Total: -4.13 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.21 -7.05 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713374818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.728 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds