Wall clock time and date at job start Sat Apr 11 2020 05:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00473 * 2 1 4 4 H 1.48503 * 109.47519 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46974 * 299.99898 * 3 2 1 6 6 H 1.48503 * 109.47151 * 59.99497 * 3 2 1 7 7 C 1.38820 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00149 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99688 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99610 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46762 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47203 * 179.97438 * 11 10 9 13 13 C 1.38234 * 119.99895 * 269.72772 * 12 11 10 14 14 C 1.38240 * 120.00062 * 180.32314 * 13 12 11 15 15 C 1.38235 * 119.99708 * 359.94741 * 14 13 12 16 16 C 1.50704 * 119.99518 * 180.02562 * 15 14 13 17 17 N 1.46498 * 109.46822 * 270.01998 * 16 15 14 18 18 C 1.34774 * 119.99949 * 180.02562 * 17 16 15 19 19 O 1.21275 * 120.00283 * 359.97438 * 18 17 16 20 20 C 1.50704 * 120.00152 * 180.02562 * 18 17 16 21 21 C 1.52998 * 115.54995 * 34.40842 * 20 18 17 22 22 F 1.39907 * 109.47129 * 85.58675 * 21 20 18 23 23 F 1.39904 * 109.47256 * 205.58335 * 21 20 18 24 24 C 1.53002 * 117.49665 * 248.74581 * 20 18 17 25 25 C 1.52995 * 117.50028 * 180.08210 * 20 18 17 26 26 C 1.38234 * 120.00204 * 0.02562 * 15 14 13 27 27 C 1.38230 * 119.99885 * 0.02562 * 26 15 14 28 28 H 0.97009 * 119.99600 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99724 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.47068 * 59.99797 * 10 9 7 31 31 H 1.09001 * 109.46870 * 299.99702 * 10 9 7 32 32 H 1.09003 * 109.47252 * 60.00073 * 11 10 9 33 33 H 1.09001 * 109.47630 * 300.00127 * 11 10 9 34 34 H 1.08001 * 120.00279 * 0.27436 * 13 12 11 35 35 H 1.07997 * 119.99868 * 179.97438 * 14 13 12 36 36 H 1.08990 * 109.47409 * 30.01905 * 16 15 14 37 37 H 1.08997 * 109.46925 * 150.02474 * 16 15 14 38 38 H 0.97003 * 120.00043 * 0.02562 * 17 16 15 39 39 H 1.09002 * 109.47358 * 325.58910 * 21 20 18 40 40 H 1.08999 * 117.49838 * 359.97438 * 24 20 18 41 41 H 1.09001 * 117.49706 * 145.02264 * 24 20 18 42 42 H 1.08999 * 117.50098 * 214.97567 * 25 20 18 43 43 H 1.08997 * 117.50150 * 359.97438 * 25 20 18 44 44 H 1.07992 * 119.99701 * 179.97438 * 26 15 14 45 45 H 1.08000 * 120.00356 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 6 1.0636 -4.8197 0.0008 12 6 1.8170 -6.1249 0.0013 13 6 2.1585 -6.7262 -1.1956 14 6 2.8437 -7.9268 -1.1951 15 6 3.1883 -8.5255 0.0023 16 6 3.9358 -9.8341 0.0027 17 7 2.9787 -10.9431 0.0050 18 6 3.4220 -12.2159 0.0063 19 8 4.6133 -12.4431 0.0051 20 6 2.4374 -13.3568 0.0080 21 6 1.1438 -13.1132 -0.7717 22 9 1.3441 -13.4329 -2.1190 23 9 0.1253 -13.9170 -0.2483 24 6 2.3489 -14.2116 1.2740 25 6 3.0033 -14.7783 0.0114 26 6 2.8472 -7.9238 1.1992 27 6 2.1611 -6.7238 1.1987 28 1 -0.4850 0.8402 -0.0004 29 1 0.3554 -2.3880 -0.0002 30 1 2.6838 -3.7142 0.8921 31 1 2.6852 -3.7150 -0.8878 32 1 0.4379 -4.7621 -0.8900 33 1 0.4358 -4.7617 0.8900 34 1 1.8894 -6.2585 -2.1311 35 1 3.1102 -8.3968 -2.1302 36 1 4.5611 -9.8956 -0.8878 37 1 4.5632 -9.8938 0.8921 38 1 2.0258 -10.7614 0.0056 39 1 0.8595 -12.0645 -0.6856 40 1 3.0031 -13.9489 2.1053 41 1 1.3691 -14.6008 1.5509 42 1 2.4538 -15.5400 -0.5416 43 1 4.0877 -14.8883 0.0119 44 1 3.1161 -8.3918 2.1346 45 1 1.8942 -6.2539 2.1337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713384857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:39 Heat of formation + Delta-G solvation = -83.714735 kcal Electronic energy + Delta-G solvation = -27625.182959 eV Core-core repulsion = 23278.981425 eV Total energy + Delta-G solvation = -4346.201534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.56737 -47.54516 -40.66884 -39.54660 -37.13418 -35.89278 -34.88632 -32.91204 -31.03060 -31.01788 -29.07256 -27.85772 -25.85651 -23.90723 -23.18998 -23.06271 -22.81000 -21.64014 -20.63316 -20.29076 -19.00795 -17.78861 -17.69843 -17.21952 -16.65187 -16.29992 -15.96010 -15.69450 -15.19994 -15.06877 -14.79615 -14.67148 -14.38143 -14.15976 -13.88843 -13.70395 -13.58532 -13.45399 -13.32387 -13.27901 -12.84139 -12.61665 -12.43262 -12.31733 -12.04030 -11.32467 -11.28296 -11.25440 -11.14697 -11.07772 -10.93036 -10.72788 -10.64768 -10.48558 -10.06293 -9.75174 -9.61366 -9.00762 -8.89595 -8.64806 -6.95618 -5.79360 -3.08381 1.09229 1.33376 1.85384 2.58668 2.80709 3.13485 3.41756 3.47468 3.49775 3.52994 3.62655 3.70336 4.01973 4.12737 4.38193 4.43302 4.56711 4.57507 4.67395 4.90109 4.93043 4.97740 5.00630 5.04214 5.25556 5.33308 5.42667 5.48398 5.49061 5.55599 5.71123 5.79003 5.84096 5.86246 6.01523 6.14707 6.23450 6.38909 6.40860 6.55714 6.77301 6.88418 6.89627 6.93695 7.61507 7.68435 8.39509 9.50740 10.07755 10.42576 11.43587 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027141 B = 0.001655 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.410622 B =16914.148660 C =17320.551341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.161 3.839 11 C -0.095 4.095 12 C -0.049 4.049 13 C -0.118 4.118 14 C -0.098 4.098 15 C -0.131 4.131 16 C 0.166 3.834 17 N -0.721 5.721 18 C 0.558 3.442 19 O -0.525 6.525 20 C -0.242 4.242 21 C 0.305 3.695 22 F -0.194 7.194 23 F -0.195 7.195 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.098 4.098 27 C -0.118 4.118 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.400 0.600 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.618 -31.549 1.116 31.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.379 5.379 10 C 0.033 3.967 11 C -0.133 4.133 12 C -0.050 4.050 13 C -0.136 4.136 14 C -0.117 4.117 15 C -0.132 4.132 16 C 0.044 3.956 17 N -0.373 5.373 18 C 0.343 3.657 19 O -0.401 6.401 20 C -0.246 4.246 21 C 0.251 3.749 22 F -0.175 7.175 23 F -0.176 7.176 24 C -0.164 4.164 25 C -0.160 4.160 26 C -0.116 4.116 27 C -0.136 4.136 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.235 0.765 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.631 -31.597 1.089 31.823 hybrid contribution -0.442 1.179 -0.143 1.268 sum 3.189 -30.417 0.946 30.599 Atomic orbital electron populations 1.69674 1.05122 1.25575 1.57856 1.24758 0.95562 0.97754 1.02996 0.86101 0.78797 0.83995 0.77212 1.20529 1.21817 1.21825 1.19288 0.91109 0.84112 1.42587 0.91095 1.42379 1.05895 1.00000 1.89596 1.20582 0.93103 0.84909 0.98065 1.20887 0.98127 0.91039 1.03237 1.20107 0.96166 0.95809 0.92930 1.21141 0.98973 0.95301 0.98177 1.21030 0.97868 0.95579 0.97188 1.19673 1.02800 0.96807 0.93894 1.20222 0.90325 0.81750 1.03336 1.46128 1.10740 1.05165 1.75247 1.18925 0.88124 0.82515 0.76143 1.90740 1.15970 1.84179 1.49202 1.22644 0.98236 0.95878 1.07877 1.20933 0.83918 0.94284 0.75744 1.93042 1.95318 1.94513 1.34593 1.92997 1.61378 1.76848 1.86378 1.23198 1.04247 0.98422 0.90570 1.23095 1.02878 0.90397 0.99642 1.21011 0.97887 0.95559 0.97151 1.21134 0.98979 0.95331 0.98162 0.93540 0.78272 0.96240 0.96245 0.90733 0.90728 0.85615 0.86093 0.90335 0.90358 0.76483 0.86874 0.87007 0.86349 0.87135 0.86260 0.86126 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.76 9.99 -15.05 -0.15 -6.91 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.63 5.60 -59.91 -0.34 -18.97 16 10 C 0.16 3.21 6.24 -4.04 -0.03 3.19 16 11 C -0.10 -1.48 5.46 -27.88 -0.15 -1.63 16 12 C -0.05 -0.64 5.13 -104.62 -0.54 -1.18 16 13 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 14 C -0.10 -0.97 9.70 -39.58 -0.38 -1.35 16 15 C -0.13 -1.21 5.25 -104.62 -0.55 -1.76 16 16 C 0.17 1.37 5.80 -5.19 -0.03 1.34 16 17 N -0.72 -5.23 5.45 -61.48 -0.33 -5.57 16 18 C 0.56 4.94 7.39 -10.98 -0.08 4.86 16 19 O -0.53 -6.51 16.26 5.56 0.09 -6.42 16 20 C -0.24 -1.63 2.36 -155.66 -0.37 -2.00 16 21 C 0.31 1.91 5.27 37.16 0.20 2.10 16 22 F -0.19 -1.64 17.29 2.25 0.04 -1.61 16 23 F -0.19 -1.36 15.91 2.25 0.04 -1.32 16 24 C -0.13 -0.65 9.63 -26.69 -0.26 -0.91 16 25 C -0.12 -0.76 9.69 -26.69 -0.26 -1.02 16 26 C -0.10 -0.95 9.70 -39.59 -0.38 -1.33 16 27 C -0.12 -1.37 9.70 -39.59 -0.38 -1.75 16 28 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.40 2.13 6.77 -40.82 -0.28 1.86 16 39 H 0.11 0.43 6.39 -51.93 -0.33 0.10 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.12 0.49 7.22 -51.93 -0.37 0.11 16 42 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.12 0.83 7.67 -51.93 -0.40 0.43 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -33.37 389.96 -9.07 -42.44 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.30 Total: 6.27 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -3.84 Total: -10.63 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.05 Total: -52.01 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: 0.09 Total: -6.42 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.07 Total: -2.93 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.37 -9.07 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713384857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.271 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds