Wall clock time and date at job start Sat Apr 11 2020 05:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00473 * 2 1 4 4 H 1.48503 * 109.47519 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46974 * 299.99898 * 3 2 1 6 6 H 1.48503 * 109.47151 * 59.99497 * 3 2 1 7 7 C 1.38820 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00149 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99688 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99610 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46762 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47203 * 179.97438 * 11 10 9 13 13 C 1.38234 * 119.99895 * 269.72772 * 12 11 10 14 14 C 1.38240 * 120.00062 * 180.32314 * 13 12 11 15 15 C 1.38235 * 119.99708 * 359.94741 * 14 13 12 16 16 C 1.50704 * 119.99518 * 180.02562 * 15 14 13 17 17 N 1.46498 * 109.46822 * 270.01998 * 16 15 14 18 18 C 1.34774 * 119.99949 * 180.02562 * 17 16 15 19 19 O 1.21275 * 120.00283 * 359.97438 * 18 17 16 20 20 C 1.50704 * 120.00152 * 180.02562 * 18 17 16 21 21 C 1.52998 * 115.54995 * 34.40842 * 20 18 17 22 22 F 1.39907 * 109.47129 * 85.58675 * 21 20 18 23 23 F 1.39904 * 109.47256 * 205.58335 * 21 20 18 24 24 C 1.53002 * 117.49665 * 248.74581 * 20 18 17 25 25 C 1.52995 * 117.50028 * 180.08210 * 20 18 17 26 26 C 1.38234 * 120.00204 * 0.02562 * 15 14 13 27 27 C 1.38230 * 119.99885 * 0.02562 * 26 15 14 28 28 H 0.97009 * 119.99600 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99724 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.47068 * 59.99797 * 10 9 7 31 31 H 1.09001 * 109.46870 * 299.99702 * 10 9 7 32 32 H 1.09003 * 109.47252 * 60.00073 * 11 10 9 33 33 H 1.09001 * 109.47630 * 300.00127 * 11 10 9 34 34 H 1.08001 * 120.00279 * 0.27436 * 13 12 11 35 35 H 1.07997 * 119.99868 * 179.97438 * 14 13 12 36 36 H 1.08990 * 109.47409 * 30.01905 * 16 15 14 37 37 H 1.08997 * 109.46925 * 150.02474 * 16 15 14 38 38 H 0.97003 * 120.00043 * 0.02562 * 17 16 15 39 39 H 1.09002 * 109.47358 * 325.58910 * 21 20 18 40 40 H 1.08999 * 117.49838 * 359.97438 * 24 20 18 41 41 H 1.09001 * 117.49706 * 145.02264 * 24 20 18 42 42 H 1.08999 * 117.50098 * 214.97567 * 25 20 18 43 43 H 1.08997 * 117.50150 * 359.97438 * 25 20 18 44 44 H 1.07992 * 119.99701 * 179.97438 * 26 15 14 45 45 H 1.08000 * 120.00356 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 6 1.0636 -4.8197 0.0008 12 6 1.8170 -6.1249 0.0013 13 6 2.1585 -6.7262 -1.1956 14 6 2.8437 -7.9268 -1.1951 15 6 3.1883 -8.5255 0.0023 16 6 3.9358 -9.8341 0.0027 17 7 2.9787 -10.9431 0.0050 18 6 3.4220 -12.2159 0.0063 19 8 4.6133 -12.4431 0.0051 20 6 2.4374 -13.3568 0.0080 21 6 1.1438 -13.1132 -0.7717 22 9 1.3441 -13.4329 -2.1190 23 9 0.1253 -13.9170 -0.2483 24 6 2.3489 -14.2116 1.2740 25 6 3.0033 -14.7783 0.0114 26 6 2.8472 -7.9238 1.1992 27 6 2.1611 -6.7238 1.1987 28 1 -0.4850 0.8402 -0.0004 29 1 0.3554 -2.3880 -0.0002 30 1 2.6838 -3.7142 0.8921 31 1 2.6852 -3.7150 -0.8878 32 1 0.4379 -4.7621 -0.8900 33 1 0.4358 -4.7617 0.8900 34 1 1.8894 -6.2585 -2.1311 35 1 3.1102 -8.3968 -2.1302 36 1 4.5611 -9.8956 -0.8878 37 1 4.5632 -9.8938 0.8921 38 1 2.0258 -10.7614 0.0056 39 1 0.8595 -12.0645 -0.6856 40 1 3.0031 -13.9489 2.1053 41 1 1.3691 -14.6008 1.5509 42 1 2.4538 -15.5400 -0.5416 43 1 4.0877 -14.8883 0.0119 44 1 3.1161 -8.3918 2.1346 45 1 1.8942 -6.2539 2.1337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713384857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:38 Heat of formation + Delta-G solvation = -103.300522 kcal Electronic energy + Delta-G solvation = -27626.032262 eV Core-core repulsion = 23278.981425 eV Total energy + Delta-G solvation = -4347.050837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.09363 -48.08686 -41.35191 -40.39504 -37.73509 -37.14064 -36.12464 -34.35141 -32.61196 -31.85169 -30.22420 -28.63896 -26.98890 -25.37493 -24.02681 -23.65052 -23.59523 -23.05679 -21.62085 -20.95241 -19.55482 -19.23306 -18.31637 -18.22427 -17.38937 -16.98136 -16.81738 -16.76955 -16.39585 -15.95381 -15.88702 -15.47902 -15.38412 -15.08958 -15.00457 -14.95285 -14.68584 -14.42031 -14.29073 -13.83750 -13.75416 -13.66733 -13.53262 -12.97273 -12.90300 -12.81720 -12.53632 -12.48207 -12.38063 -12.12144 -12.03281 -11.81905 -11.79887 -11.69990 -11.55008 -11.21291 -10.97368 -10.29097 -9.82941 -9.57720 -9.03912 -7.98063 -5.27679 0.23421 0.49811 1.22247 1.46793 1.47488 1.57889 1.94011 2.30671 2.54031 2.65815 2.84242 3.07376 3.15934 3.35672 3.54544 3.58845 3.63206 3.81556 3.86898 3.96524 4.08572 4.13837 4.17097 4.37276 4.44689 4.48194 4.48566 4.55817 4.60209 4.68452 4.74281 4.77589 4.83189 5.05293 5.05742 5.10690 5.18928 5.24752 5.26547 5.44823 5.49103 5.60040 5.78184 6.05823 6.24669 6.30577 6.97884 7.30764 8.05282 8.29445 9.25517 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027141 B = 0.001655 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.410622 B =16914.148660 C =17320.551341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.748 5.748 10 C 0.161 3.839 11 C -0.080 4.080 12 C -0.069 4.069 13 C -0.126 4.126 14 C -0.096 4.096 15 C -0.117 4.117 16 C 0.170 3.830 17 N -0.710 5.710 18 C 0.559 3.441 19 O -0.565 6.565 20 C -0.249 4.249 21 C 0.304 3.696 22 F -0.208 7.208 23 F -0.198 7.198 24 C -0.110 4.110 25 C -0.130 4.130 26 C -0.093 4.093 27 C -0.125 4.125 28 H 0.252 0.748 29 H 0.375 0.625 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.411 0.589 39 H 0.141 0.859 40 H 0.115 0.885 41 H 0.133 0.867 42 H 0.118 0.882 43 H 0.108 0.892 44 H 0.142 0.858 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 -32.759 1.486 32.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.092 0.908 9 N -0.391 5.391 10 C 0.035 3.965 11 C -0.118 4.118 12 C -0.070 4.070 13 C -0.144 4.144 14 C -0.114 4.114 15 C -0.118 4.118 16 C 0.047 3.953 17 N -0.362 5.362 18 C 0.345 3.655 19 O -0.444 6.444 20 C -0.253 4.253 21 C 0.250 3.750 22 F -0.189 7.189 23 F -0.179 7.179 24 C -0.147 4.147 25 C -0.168 4.168 26 C -0.112 4.112 27 C -0.143 4.143 28 H 0.061 0.939 29 H 0.207 0.793 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.144 0.856 35 H 0.157 0.843 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.249 0.751 39 H 0.158 0.842 40 H 0.133 0.867 41 H 0.151 0.849 42 H 0.137 0.863 43 H 0.126 0.874 44 H 0.160 0.840 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.145 -32.829 1.459 33.122 hybrid contribution -0.551 1.441 -0.253 1.564 sum 3.593 -31.388 1.207 31.616 Atomic orbital electron populations 1.69822 1.06590 1.26143 1.59328 1.25602 0.96482 1.01183 1.03474 0.85049 0.78162 0.79572 0.76814 1.19139 1.21825 1.21805 1.19675 0.91510 0.85413 1.41507 0.90795 1.42601 1.05730 1.01224 1.89497 1.20701 0.93821 0.84483 0.97483 1.20646 0.97195 0.90880 1.03039 1.19908 0.97725 0.95175 0.94186 1.21218 0.99378 0.96050 0.97751 1.21214 0.97041 0.94839 0.98318 1.19753 1.01691 0.96807 0.93544 1.20141 0.90317 0.81422 1.03388 1.46008 1.11249 1.04551 1.74390 1.19197 0.87865 0.83148 0.75256 1.90725 1.17700 1.84775 1.51177 1.22595 0.98141 0.95257 1.09315 1.21169 0.83562 0.95440 0.74784 1.93015 1.95404 1.94715 1.35797 1.92990 1.61406 1.77146 1.86343 1.23286 1.04769 0.96773 0.89901 1.23125 1.02460 0.90380 1.00807 1.21211 0.96910 0.94748 0.98297 1.21225 0.99315 0.96074 0.97721 0.93873 0.79290 0.96435 0.96522 0.90995 0.90903 0.85575 0.84254 0.90552 0.90222 0.75146 0.84238 0.86710 0.84920 0.86340 0.87393 0.84003 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 2 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 3 Si 0.98 46.18 29.55 68.60 2.03 48.20 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.75 -38.45 5.60 -343.46 -1.92 -40.37 16 10 C 0.16 6.48 6.24 86.38 0.54 7.02 16 11 C -0.08 -2.48 5.46 29.85 0.16 -2.32 16 12 C -0.07 -1.73 5.13 -19.87 -0.10 -1.83 16 13 C -0.13 -2.77 9.70 22.27 0.22 -2.56 16 14 C -0.10 -1.67 9.70 22.27 0.22 -1.46 16 15 C -0.12 -1.86 5.25 -19.86 -0.10 -1.96 16 16 C 0.17 2.42 5.80 85.63 0.50 2.91 16 17 N -0.71 -8.64 5.45 -466.81 -2.54 -11.18 16 18 C 0.56 9.02 7.39 87.66 0.65 9.67 16 19 O -0.56 -13.57 16.26 -3.01 -0.05 -13.62 16 20 C -0.25 -2.94 2.36 -52.93 -0.13 -3.06 16 21 C 0.30 3.17 5.27 71.98 0.38 3.55 16 22 F -0.21 -3.24 17.29 44.97 0.78 -2.46 16 23 F -0.20 -2.32 15.91 44.97 0.72 -1.61 16 24 C -0.11 -0.92 9.63 30.62 0.29 -0.63 16 25 C -0.13 -1.48 9.69 30.62 0.30 -1.18 16 26 C -0.09 -1.58 9.70 22.27 0.22 -1.37 16 27 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 28 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 29 H 0.38 20.25 7.67 -92.71 -0.71 19.54 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 2.23 8.08 -2.39 -0.02 2.21 16 33 H 0.07 2.25 8.09 -2.39 -0.02 2.23 16 34 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 37 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 38 H 0.41 3.18 6.77 -92.71 -0.63 2.56 16 39 H 0.14 0.67 6.39 -2.39 -0.02 0.66 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.13 0.75 7.22 -2.39 -0.02 0.73 16 42 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.11 1.48 7.67 -2.39 -0.02 1.47 16 44 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 45 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -71.52 389.96 3.63 -67.89 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -0.31 Total: 24.99 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.66 Total: -12.87 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -4.18 Total: -110.53 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.05 Total: -13.62 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 1.49 Total: -4.07 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -71.52 3.63 -67.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713384857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.413 kcal (2) G-P(sol) polarization free energy of solvation -71.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds