Wall clock time and date at job start Sat Apr 11 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99709 * 2 1 4 4 H 1.48493 * 109.47428 * 269.99962 * 3 2 1 5 5 H 1.48497 * 109.47001 * 30.00439 * 3 2 1 6 6 H 1.48503 * 109.46842 * 149.99713 * 3 2 1 7 7 C 1.38810 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00217 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99841 * 359.97438 * 7 2 1 10 10 C 1.47745 * 125.82342 * 346.81926 * 9 7 2 11 11 C 1.54916 * 104.83944 * 204.24773 * 10 9 7 12 12 C 1.55159 * 101.57908 * 322.90175 * 11 10 9 13 13 C 1.47027 * 125.64746 * 166.81179 * 9 7 2 14 14 H 1.09007 * 109.88087 * 59.32719 * 13 9 7 15 15 C 1.53002 * 109.88347 * 298.31697 * 13 9 7 16 16 C 1.52995 * 109.46911 * 176.67877 * 15 13 9 17 17 C 1.53006 * 109.46946 * 185.08715 * 16 15 13 18 18 N 1.46500 * 109.46819 * 180.02562 * 17 16 15 19 19 C 1.34783 * 119.99519 * 179.97438 * 18 17 16 20 20 O 1.21583 * 120.00296 * 0.02562 * 19 18 17 21 21 C 1.47548 * 119.99377 * 179.97438 * 19 18 17 22 22 C 1.39905 * 120.18441 * 89.73233 * 21 19 18 23 23 F 1.35097 * 120.09661 * 0.02562 * 22 21 19 24 24 C 1.38215 * 119.80436 * 179.76366 * 22 21 19 25 25 C 1.38308 * 120.19154 * 0.50622 * 24 22 21 26 26 C 1.38301 * 120.38210 * 359.74552 * 25 24 22 27 27 C 1.38226 * 120.19062 * 359.97438 * 26 25 24 28 28 F 1.35101 * 120.09701 * 180.02562 * 27 26 25 29 29 H 0.97001 * 120.00493 * 0.02562 * 1 2 3 30 30 H 1.08992 * 110.43921 * 85.37139 * 10 9 7 31 31 H 1.09003 * 110.28975 * 323.04521 * 10 9 7 32 32 H 1.09002 * 111.00468 * 204.82957 * 11 10 9 33 33 H 1.08997 * 111.03778 * 80.98825 * 11 10 9 34 34 H 1.08995 * 110.72066 * 277.13820 * 12 11 10 35 35 H 1.09009 * 110.71520 * 153.86683 * 12 11 10 36 36 H 1.09001 * 109.46749 * 56.67771 * 15 13 9 37 37 H 1.08999 * 109.46903 * 296.67981 * 15 13 9 38 38 H 1.08995 * 109.47272 * 65.08151 * 16 15 13 39 39 H 1.09003 * 109.47123 * 305.08394 * 16 15 13 40 40 H 1.08991 * 109.47117 * 59.99676 * 17 16 15 41 41 H 1.09000 * 109.46459 * 299.99727 * 17 16 15 42 42 H 0.97002 * 120.00653 * 359.97438 * 18 17 16 43 43 H 1.08006 * 119.90761 * 180.25409 * 24 22 21 44 44 H 1.07994 * 119.80727 * 179.76313 * 25 24 22 45 45 H 1.08003 * 119.90606 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1168 -2.5538 0.2731 11 6 -0.2622 -4.0163 0.7628 12 6 0.7706 -4.7491 -0.1338 13 6 1.9045 -3.7117 -0.2736 14 1 2.6944 -3.9265 0.4462 15 6 2.4713 -3.7487 -1.6943 16 6 3.1441 -5.1006 -1.9399 17 6 3.8203 -5.0919 -3.3123 18 7 4.4640 -6.3867 -3.5477 19 6 5.1256 -6.6107 -4.7005 20 8 5.1885 -5.7381 -5.5448 21 6 5.7743 -7.9146 -4.9372 22 6 5.0638 -8.9531 -5.5486 23 9 3.7800 -8.7656 -5.9253 24 6 5.6807 -10.1698 -5.7711 25 6 6.9934 -10.3655 -5.3817 26 6 7.7015 -9.3459 -4.7719 27 6 7.1018 -8.1210 -4.5470 28 9 7.7955 -7.1262 -3.9516 29 1 -0.4851 0.8400 -0.0004 30 1 -0.6970 -2.3989 -0.6364 31 1 -0.4361 -1.8600 1.0508 32 1 -1.2702 -4.3901 0.5832 33 1 0.0030 -4.1044 1.8164 34 1 0.3393 -4.9826 -1.1071 35 1 1.1333 -5.6532 0.3556 36 1 3.2044 -2.9509 -1.8139 37 1 1.6626 -3.6095 -2.4118 38 1 2.3938 -5.8907 -1.9094 39 1 3.8920 -5.2799 -1.1675 40 1 4.5705 -4.3019 -3.3427 41 1 3.0724 -4.9127 -4.0847 42 1 4.4142 -7.0828 -2.8740 43 1 5.1350 -10.9713 -6.2467 44 1 7.4681 -11.3198 -5.5551 45 1 8.7263 -9.5070 -4.4713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713440799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:42 Heat of formation + Delta-G solvation = -86.565508 kcal Electronic energy + Delta-G solvation = -28465.506760 eV Core-core repulsion = 24119.181608 eV Total energy + Delta-G solvation = -4346.325152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.52131 -49.49909 -40.17635 -38.73868 -37.80336 -35.57336 -33.07709 -32.32284 -31.59587 -30.95465 -29.37336 -28.07448 -25.28820 -24.51652 -23.58198 -23.40463 -21.56813 -20.99500 -20.10880 -19.15911 -18.77540 -17.97504 -17.82100 -16.81131 -16.63288 -16.17040 -15.98093 -15.78824 -15.71273 -15.52551 -15.02151 -14.91275 -14.43859 -14.14813 -14.03338 -13.73069 -13.32437 -12.89312 -12.60380 -12.47234 -12.45294 -12.27097 -12.03943 -11.90032 -11.69465 -11.45534 -11.01368 -10.81371 -10.73945 -10.55254 -10.30272 -10.05089 -9.96709 -9.74838 -9.64633 -9.58433 -9.57286 -9.36874 -9.23169 -8.54924 -6.74223 -5.70030 -3.04770 0.20047 0.36956 2.20265 2.65174 2.88661 3.22541 3.42403 3.47889 3.49007 3.78631 4.03571 4.24711 4.27556 4.49949 4.52431 4.97182 5.08177 5.14770 5.18153 5.29058 5.37374 5.38062 5.47538 5.52187 5.62169 5.62773 5.74335 5.86854 5.95461 6.01826 6.07909 6.11658 6.25445 6.33160 6.37082 6.44699 6.59357 6.72419 6.75140 6.97949 7.18595 7.22585 7.59214 7.66166 7.84468 7.88683 8.33340 9.24398 9.86300 10.55607 11.42172 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017108 B = 0.002199 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.252615 B =12732.856946 C =13554.964398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.074 0.926 9 N -0.597 5.597 10 C 0.171 3.829 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.122 4.122 16 C -0.127 4.127 17 C 0.116 3.884 18 N -0.713 5.713 19 C 0.562 3.438 20 O -0.518 6.518 21 C -0.198 4.198 22 C 0.164 3.836 23 F -0.120 7.120 24 C -0.166 4.166 25 C -0.046 4.046 26 C -0.165 4.165 27 C 0.164 3.836 28 F -0.119 7.119 29 H 0.252 0.748 30 H 0.023 0.977 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.402 0.598 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.118 -25.600 -8.345 29.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.047 3.953 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.165 4.165 17 C -0.006 4.006 18 N -0.364 5.364 19 C 0.345 3.655 20 O -0.393 6.393 21 C -0.203 4.203 22 C 0.143 3.857 23 F -0.098 7.098 24 C -0.184 4.184 25 C -0.064 4.064 26 C -0.184 4.184 27 C 0.144 3.856 28 F -0.098 7.098 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.236 0.764 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.055 -24.617 -8.911 28.822 hybrid contribution 0.322 0.810 0.206 0.896 sum 12.377 -23.807 -8.705 28.209 Atomic orbital electron populations 1.69933 1.04961 1.25051 1.56659 1.24872 0.95663 0.97720 1.02057 0.86174 0.78683 0.83637 0.77624 1.21546 1.21732 1.20678 1.18969 0.90321 0.82353 1.43686 0.90775 1.44622 1.05360 1.00995 1.81110 1.21486 0.85011 0.90208 0.98639 1.23010 0.97400 0.99775 0.98703 1.22591 0.97125 0.97096 0.99407 1.20921 0.93825 0.86986 0.92813 0.95167 1.22033 1.00078 0.94194 0.99901 1.21845 0.99729 1.00365 0.94607 1.21626 0.96996 0.83598 0.98410 1.46082 1.54044 1.17752 1.18486 1.17745 0.78930 0.86146 0.82693 1.90857 1.59465 1.44713 1.44302 1.20018 0.95251 0.96390 1.08682 1.17332 0.79259 0.92922 0.96155 1.91597 1.34188 1.95590 1.88408 1.21209 0.96496 0.96411 1.04325 1.21019 0.92721 0.99001 0.93660 1.21212 1.02215 0.91637 1.03368 1.17338 0.88052 0.85906 0.94345 1.91602 1.78090 1.59686 1.80377 0.93762 0.95935 0.90999 0.92570 0.92495 0.92046 0.92661 0.91638 0.92134 0.91584 0.91634 0.90966 0.91052 0.76400 0.83222 0.83282 0.83217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 10.54 55.49 0.59 -26.60 16 2 C -0.01 -0.19 5.47 -17.43 -0.10 -0.28 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -6.23 9.75 -15.06 -0.15 -6.38 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -15.07 3.14 -162.31 -0.51 -15.58 16 10 C 0.17 4.18 5.46 -2.35 -0.01 4.17 16 11 C -0.15 -2.84 7.09 -24.58 -0.17 -3.02 16 12 C -0.12 -2.12 5.61 -24.90 -0.14 -2.26 16 13 C 0.16 3.25 3.18 -66.95 -0.21 3.03 16 14 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 15 C -0.12 -2.17 4.69 -26.73 -0.13 -2.30 16 16 C -0.13 -1.68 5.07 -26.73 -0.14 -1.82 16 17 C 0.12 1.58 5.67 -4.04 -0.02 1.56 16 18 N -0.71 -8.57 5.55 -61.34 -0.34 -8.91 16 19 C 0.56 7.84 6.54 -12.46 -0.08 7.76 16 20 O -0.52 -9.40 17.11 5.29 0.09 -9.31 16 21 C -0.20 -2.13 5.64 -104.86 -0.59 -2.72 16 22 C 0.16 1.49 7.29 -38.97 -0.28 1.20 16 23 F -0.12 -1.29 16.83 2.25 0.04 -1.26 16 24 C -0.17 -0.92 10.01 -39.56 -0.40 -1.31 16 25 C -0.05 -0.18 10.03 -39.53 -0.40 -0.58 16 26 C -0.17 -0.93 10.01 -39.56 -0.40 -1.32 16 27 C 0.16 1.50 7.29 -38.97 -0.28 1.22 16 28 F -0.12 -1.31 16.83 2.25 0.04 -1.28 16 29 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.02 0.60 8.10 -51.93 -0.42 0.17 16 31 H 0.07 1.96 6.83 -51.93 -0.35 1.60 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.01 7.79 -51.93 -0.40 0.60 16 35 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.06 1.29 7.89 -51.93 -0.41 0.88 16 37 H 0.06 1.15 8.07 -51.93 -0.42 0.74 16 38 H 0.07 0.79 7.57 -51.93 -0.39 0.40 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.40 3.67 8.46 -40.82 -0.35 3.33 16 43 H 0.15 0.48 8.06 -52.48 -0.42 0.05 16 44 H 0.15 0.10 8.06 -52.49 -0.42 -0.33 16 45 H 0.15 0.49 8.06 -52.48 -0.42 0.07 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -33.98 381.70 -9.39 -43.37 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.52 Total: -0.47 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -3.50 Total: -3.05 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.26 Total: -51.09 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.08 Total: -2.53 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.98 -9.39 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713440799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.198 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds