Wall clock time and date at job start Sat Apr 11 2020 05:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99709 * 2 1 4 4 H 1.48493 * 109.47428 * 269.99962 * 3 2 1 5 5 H 1.48497 * 109.47001 * 30.00439 * 3 2 1 6 6 H 1.48503 * 109.46842 * 149.99713 * 3 2 1 7 7 C 1.38810 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00217 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99841 * 359.97438 * 7 2 1 10 10 C 1.47745 * 125.82342 * 346.81926 * 9 7 2 11 11 C 1.54916 * 104.83944 * 204.24773 * 10 9 7 12 12 C 1.55159 * 101.57908 * 322.90175 * 11 10 9 13 13 C 1.47027 * 125.64746 * 166.81179 * 9 7 2 14 14 H 1.09007 * 109.88087 * 59.32719 * 13 9 7 15 15 C 1.53002 * 109.88347 * 298.31697 * 13 9 7 16 16 C 1.52995 * 109.46911 * 176.67877 * 15 13 9 17 17 C 1.53006 * 109.46946 * 185.08715 * 16 15 13 18 18 N 1.46500 * 109.46819 * 180.02562 * 17 16 15 19 19 C 1.34783 * 119.99519 * 179.97438 * 18 17 16 20 20 O 1.21583 * 120.00296 * 0.02562 * 19 18 17 21 21 C 1.47548 * 119.99377 * 179.97438 * 19 18 17 22 22 C 1.39905 * 120.18441 * 89.73233 * 21 19 18 23 23 F 1.35097 * 120.09661 * 0.02562 * 22 21 19 24 24 C 1.38215 * 119.80436 * 179.76366 * 22 21 19 25 25 C 1.38308 * 120.19154 * 0.50622 * 24 22 21 26 26 C 1.38301 * 120.38210 * 359.74552 * 25 24 22 27 27 C 1.38226 * 120.19062 * 359.97438 * 26 25 24 28 28 F 1.35101 * 120.09701 * 180.02562 * 27 26 25 29 29 H 0.97001 * 120.00493 * 0.02562 * 1 2 3 30 30 H 1.08992 * 110.43921 * 85.37139 * 10 9 7 31 31 H 1.09003 * 110.28975 * 323.04521 * 10 9 7 32 32 H 1.09002 * 111.00468 * 204.82957 * 11 10 9 33 33 H 1.08997 * 111.03778 * 80.98825 * 11 10 9 34 34 H 1.08995 * 110.72066 * 277.13820 * 12 11 10 35 35 H 1.09009 * 110.71520 * 153.86683 * 12 11 10 36 36 H 1.09001 * 109.46749 * 56.67771 * 15 13 9 37 37 H 1.08999 * 109.46903 * 296.67981 * 15 13 9 38 38 H 1.08995 * 109.47272 * 65.08151 * 16 15 13 39 39 H 1.09003 * 109.47123 * 305.08394 * 16 15 13 40 40 H 1.08991 * 109.47117 * 59.99676 * 17 16 15 41 41 H 1.09000 * 109.46459 * 299.99727 * 17 16 15 42 42 H 0.97002 * 120.00653 * 359.97438 * 18 17 16 43 43 H 1.08006 * 119.90761 * 180.25409 * 24 22 21 44 44 H 1.07994 * 119.80727 * 179.76313 * 25 24 22 45 45 H 1.08003 * 119.90606 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1168 -2.5538 0.2731 11 6 -0.2622 -4.0163 0.7628 12 6 0.7706 -4.7491 -0.1338 13 6 1.9045 -3.7117 -0.2736 14 1 2.6944 -3.9265 0.4462 15 6 2.4713 -3.7487 -1.6943 16 6 3.1441 -5.1006 -1.9399 17 6 3.8203 -5.0919 -3.3123 18 7 4.4640 -6.3867 -3.5477 19 6 5.1256 -6.6107 -4.7005 20 8 5.1885 -5.7381 -5.5448 21 6 5.7743 -7.9146 -4.9372 22 6 5.0638 -8.9531 -5.5486 23 9 3.7800 -8.7656 -5.9253 24 6 5.6807 -10.1698 -5.7711 25 6 6.9934 -10.3655 -5.3817 26 6 7.7015 -9.3459 -4.7719 27 6 7.1018 -8.1210 -4.5470 28 9 7.7955 -7.1262 -3.9516 29 1 -0.4851 0.8400 -0.0004 30 1 -0.6970 -2.3989 -0.6364 31 1 -0.4361 -1.8600 1.0508 32 1 -1.2702 -4.3901 0.5832 33 1 0.0030 -4.1044 1.8164 34 1 0.3393 -4.9826 -1.1071 35 1 1.1333 -5.6532 0.3556 36 1 3.2044 -2.9509 -1.8139 37 1 1.6626 -3.6095 -2.4118 38 1 2.3938 -5.8907 -1.9094 39 1 3.8920 -5.2799 -1.1675 40 1 4.5705 -4.3019 -3.3427 41 1 3.0724 -4.9127 -4.0847 42 1 4.4142 -7.0828 -2.8740 43 1 5.1350 -10.9713 -6.2467 44 1 7.4681 -11.3198 -5.5551 45 1 8.7263 -9.5070 -4.4713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713440799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:41 Heat of formation + Delta-G solvation = -107.977251 kcal Electronic energy + Delta-G solvation = -28466.435243 eV Core-core repulsion = 24119.181608 eV Total energy + Delta-G solvation = -4347.253635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.22495 -50.20135 -41.14556 -39.56021 -39.29643 -36.83743 -34.74871 -33.84346 -32.41809 -31.45746 -31.24499 -29.50578 -26.73763 -26.10644 -24.69529 -23.95426 -22.82217 -21.98145 -21.87444 -20.76547 -19.50407 -18.82941 -18.64636 -18.48120 -17.62294 -17.03045 -16.87631 -16.81782 -16.63110 -16.50958 -16.32653 -16.03316 -15.70605 -15.53896 -15.35651 -15.00803 -14.39055 -13.96893 -13.84426 -13.71786 -13.61608 -13.20880 -13.13856 -13.02655 -13.01063 -12.92675 -12.77450 -12.70897 -12.30456 -12.01006 -11.89428 -11.71429 -11.56227 -11.37340 -11.29437 -11.14971 -10.67383 -10.36305 -10.23483 -9.89939 -8.79603 -7.85907 -5.21318 -0.35874 -0.13971 1.16021 1.42729 1.44702 1.52650 1.87226 2.24143 2.48710 2.62406 3.25053 3.30962 3.34655 3.66579 3.71772 3.73741 3.88699 3.95948 4.11821 4.12911 4.21868 4.32061 4.37977 4.56490 4.58084 4.61272 4.71672 4.78686 4.81176 4.88842 4.94280 4.98155 5.00601 5.09562 5.11677 5.16711 5.23909 5.31054 5.48484 5.49712 5.62353 5.67734 5.68280 5.79283 6.21965 6.26929 6.88521 7.11708 7.81379 8.48791 9.25408 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017108 B = 0.002199 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.252615 B =12732.856946 C =13554.964398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.971 3.029 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.230 4.230 8 H 0.076 0.924 9 N -0.620 5.620 10 C 0.173 3.827 11 C -0.137 4.137 12 C -0.111 4.111 13 C 0.151 3.849 14 H 0.036 0.964 15 C -0.112 4.112 16 C -0.107 4.107 17 C 0.122 3.878 18 N -0.700 5.700 19 C 0.557 3.443 20 O -0.574 6.574 21 C -0.223 4.223 22 C 0.141 3.859 23 F -0.138 7.138 24 C -0.150 4.150 25 C -0.024 4.024 26 C -0.151 4.151 27 C 0.140 3.860 28 F -0.139 7.139 29 H 0.246 0.754 30 H -0.010 1.010 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.418 0.582 43 H 0.179 0.821 44 H 0.198 0.802 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.996 -30.135 -8.175 34.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.360 4.360 8 H 0.093 0.907 9 N -0.344 5.344 10 C 0.047 3.953 11 C -0.175 4.175 12 C -0.149 4.149 13 C 0.045 3.955 14 H 0.054 0.946 15 C -0.152 4.152 16 C -0.145 4.145 17 C -0.002 4.002 18 N -0.351 5.351 19 C 0.343 3.657 20 O -0.453 6.453 21 C -0.228 4.228 22 C 0.121 3.879 23 F -0.116 7.116 24 C -0.169 4.169 25 C -0.042 4.042 26 C -0.169 4.169 27 C 0.119 3.881 28 F -0.117 7.117 29 H 0.055 0.945 30 H 0.008 0.992 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.255 0.745 43 H 0.197 0.803 44 H 0.215 0.785 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 13.954 -29.219 -8.708 33.530 hybrid contribution -0.203 2.113 0.138 2.127 sum 13.750 -27.106 -8.570 31.579 Atomic orbital electron populations 1.70145 1.06269 1.25125 1.58347 1.25652 0.96521 1.00916 1.02889 0.85191 0.77867 0.79700 0.77316 1.21706 1.21980 1.19351 1.19299 0.90684 0.83777 1.42199 0.90651 1.44934 1.05827 1.02249 1.81390 1.21297 0.84463 0.93360 0.96136 1.22880 0.99652 0.95664 0.99319 1.22589 0.95074 0.97273 0.99959 1.21215 0.95148 0.85479 0.93621 0.94613 1.21825 0.98988 0.96167 0.98258 1.21637 1.00340 0.98050 0.94463 1.21398 0.96242 0.84109 0.98420 1.45936 1.53104 1.17422 1.18596 1.18361 0.78265 0.87009 0.82110 1.90811 1.61557 1.46914 1.46040 1.19863 0.96278 0.95217 1.11445 1.17674 0.78883 0.94030 0.97335 1.91548 1.35431 1.95830 1.88794 1.21631 0.97146 0.95280 1.02816 1.21605 0.91658 1.00088 0.90813 1.21627 1.03375 0.90076 1.01844 1.17696 0.87671 0.86980 0.95703 1.91549 1.78356 1.60835 1.80975 0.94507 0.99173 0.94854 0.90051 0.91717 0.91096 0.88443 0.94410 0.93961 0.89008 0.89867 0.92872 0.92506 0.74458 0.80331 0.78527 0.80418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.77 10.54 21.65 0.23 -58.54 16 2 C -0.07 -3.91 5.47 84.86 0.46 -3.45 16 3 Si 0.97 47.42 29.55 68.60 2.03 49.44 16 4 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.23 -13.13 9.75 84.03 0.82 -12.31 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.62 -31.97 3.14 -667.42 -2.09 -34.06 16 10 C 0.17 8.66 5.46 86.80 0.47 9.14 16 11 C -0.14 -4.93 7.09 31.99 0.23 -4.70 16 12 C -0.11 -3.46 5.61 31.78 0.18 -3.28 16 13 C 0.15 5.92 3.18 45.34 0.14 6.07 16 14 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 15 C -0.11 -4.02 4.69 30.59 0.14 -3.88 16 16 C -0.11 -2.67 5.07 30.59 0.16 -2.51 16 17 C 0.12 3.39 5.67 86.38 0.49 3.88 16 18 N -0.70 -16.87 5.55 -466.26 -2.59 -19.45 16 19 C 0.56 16.17 6.54 86.70 0.57 16.74 16 20 O -0.57 -22.23 17.11 -3.98 -0.07 -22.30 16 21 C -0.22 -4.74 5.64 -20.02 -0.11 -4.86 16 22 C 0.14 2.38 7.29 22.67 0.17 2.55 16 23 F -0.14 -2.94 16.83 44.97 0.76 -2.19 16 24 C -0.15 -1.09 10.01 22.28 0.22 -0.87 16 25 C -0.02 -0.07 10.03 22.30 0.22 0.16 16 26 C -0.15 -1.13 10.01 22.28 0.22 -0.91 16 27 C 0.14 2.40 7.29 22.67 0.17 2.57 16 28 F -0.14 -3.06 16.83 44.97 0.76 -2.30 16 29 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 30 H -0.01 -0.54 8.10 -2.39 -0.02 -0.56 16 31 H 0.03 1.90 6.83 -2.39 -0.02 1.88 16 32 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 2.10 7.79 -2.39 -0.02 2.08 16 35 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.04 1.54 7.89 -2.39 -0.02 1.52 16 37 H 0.04 1.65 8.07 -2.39 -0.02 1.63 16 38 H 0.09 1.89 7.57 -2.39 -0.02 1.87 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.42 7.14 8.46 -92.71 -0.78 6.36 16 43 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 44 H 0.20 -1.21 8.06 -2.91 -0.02 -1.23 16 45 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 Total: -1.00 -81.72 381.70 3.79 -77.92 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 0.23 Total: 7.15 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 4.55 Total: 4.32 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -4.45 Total: -112.05 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.07 Total: -22.30 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 1.51 Total: -4.49 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.44 kcal Total: -81.72 3.79 -77.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713440799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.056 kcal (2) G-P(sol) polarization free energy of solvation -81.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds