Wall clock time and date at job start Sat Apr 11 2020 05:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99716 * 2 1 4 4 H 1.48504 * 109.46892 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47418 * 300.00197 * 3 2 1 6 6 H 1.48500 * 109.46975 * 60.00472 * 3 2 1 7 7 C 1.38805 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00125 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64503 * 14.63353 * 9 7 2 11 11 C 1.54910 * 104.82705 * 155.90694 * 10 9 7 12 12 C 1.55151 * 101.58432 * 37.01169 * 11 10 9 13 13 C 1.47015 * 125.64962 * 194.67763 * 9 7 2 14 14 H 1.09003 * 109.88457 * 300.59814 * 13 9 7 15 15 C 1.52996 * 109.88280 * 61.60165 * 13 9 7 16 16 C 1.53000 * 109.47252 * 185.23848 * 15 13 9 17 17 C 1.53009 * 109.47023 * 174.95171 * 16 15 13 18 18 N 1.46506 * 109.46955 * 180.02562 * 17 16 15 19 19 C 1.34768 * 120.00072 * 179.97438 * 18 17 16 20 20 O 1.21594 * 120.00013 * 359.97438 * 19 18 17 21 21 C 1.47544 * 120.00243 * 179.97438 * 19 18 17 22 22 C 1.39899 * 120.18476 * 89.72322 * 21 19 18 23 23 F 1.35099 * 120.10014 * 0.02562 * 22 21 19 24 24 C 1.38224 * 119.80038 * 179.74589 * 22 21 19 25 25 C 1.38305 * 120.19161 * 0.53315 * 24 22 21 26 26 C 1.38307 * 120.38287 * 359.74323 * 25 24 22 27 27 C 1.38221 * 120.18955 * 359.97388 * 26 25 24 28 28 F 1.35095 * 120.09357 * 180.02562 * 27 26 25 29 29 H 0.96998 * 120.00044 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36948 * 274.74374 * 10 9 7 31 31 H 1.09004 * 110.36922 * 37.07547 * 10 9 7 32 32 H 1.09007 * 111.00007 * 155.08208 * 11 10 9 33 33 H 1.08996 * 111.00809 * 278.89195 * 11 10 9 34 34 H 1.08999 * 110.72713 * 206.13107 * 12 11 10 35 35 H 1.09004 * 110.72288 * 82.85504 * 12 11 10 36 36 H 1.09004 * 109.46878 * 65.24230 * 15 13 9 37 37 H 1.09004 * 109.47464 * 305.24167 * 15 13 9 38 38 H 1.08998 * 109.47152 * 54.95716 * 16 15 13 39 39 H 1.09004 * 109.47229 * 294.94862 * 16 15 13 40 40 H 1.09004 * 109.46866 * 299.99913 * 17 16 15 41 41 H 1.08996 * 109.47153 * 60.00557 * 17 16 15 42 42 H 0.97004 * 119.99658 * 0.02562 * 18 17 16 43 43 H 1.08005 * 119.90251 * 180.29669 * 24 22 21 44 44 H 1.07999 * 119.80926 * 179.76364 * 25 24 22 45 45 H 1.08001 * 119.90254 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1079 -2.5525 -0.3027 11 6 -0.2477 -4.0214 -0.7746 12 6 0.7643 -4.7442 0.1531 13 6 1.8982 -3.7080 0.3016 14 1 2.7026 -3.9324 -0.3988 15 6 2.4357 -3.7265 1.7339 16 6 3.1447 -5.0568 1.9955 17 6 3.7904 -5.0266 3.3823 18 7 4.4698 -6.3003 3.6326 19 6 5.1138 -6.5027 4.7990 20 8 5.1314 -5.6281 5.6435 21 6 5.7975 -7.7856 5.0512 22 6 7.1368 -7.9532 4.6832 23 9 7.8098 -6.9399 4.0955 24 6 7.7711 -9.1566 4.9281 25 6 7.0824 -10.1970 5.5249 26 6 5.7566 -10.0418 5.8867 27 6 5.1085 -8.8432 5.6545 28 9 3.8135 -8.6935 6.0091 29 1 -0.4850 0.8400 0.0004 30 1 -0.7062 -2.3831 0.5925 31 1 -0.4092 -1.8689 -1.0964 32 1 -1.2604 -4.3898 -0.6103 33 1 0.0383 -4.1244 -1.8213 34 1 1.1341 -5.6561 -0.3157 35 1 0.3125 -4.9628 1.1207 36 1 1.6081 -3.6120 2.4341 37 1 3.1411 -2.9063 1.8679 38 1 3.9144 -5.2131 1.2398 39 1 2.4200 -5.8699 1.9498 40 1 4.5150 -4.2136 3.4280 41 1 3.0208 -4.8704 4.1382 42 1 4.4566 -6.9976 2.9583 43 1 8.8064 -9.2862 4.6490 44 1 7.5830 -11.1359 5.7099 45 1 5.2261 -10.8595 6.3519 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713440800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:44 Heat of formation + Delta-G solvation = -87.023028 kcal Electronic energy + Delta-G solvation = -28468.118720 eV Core-core repulsion = 24121.773728 eV Total energy + Delta-G solvation = -4346.344992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.52046 -49.49822 -40.17407 -38.73653 -37.81299 -35.57550 -33.07733 -32.32763 -31.59766 -30.95338 -29.37004 -28.08788 -25.29117 -24.51303 -23.58325 -23.40363 -21.55272 -20.99127 -20.11731 -19.17054 -18.77689 -17.97575 -17.81985 -16.81057 -16.63186 -16.16935 -15.97852 -15.78723 -15.70834 -15.52288 -15.01916 -14.91154 -14.44061 -14.15080 -14.03602 -13.73022 -13.32320 -12.88227 -12.60386 -12.46866 -12.45124 -12.27691 -12.03664 -11.91022 -11.69916 -11.46167 -11.01010 -10.80686 -10.74320 -10.55413 -10.30002 -10.02411 -9.96630 -9.74652 -9.64684 -9.60139 -9.58516 -9.36745 -9.22993 -8.54283 -6.73174 -5.71021 -3.05958 0.20178 0.37058 2.20444 2.65301 2.88820 3.22658 3.41527 3.47901 3.49785 3.78758 4.03682 4.24848 4.27708 4.50052 4.52170 4.97375 5.08311 5.14923 5.18429 5.29155 5.37512 5.38282 5.47317 5.52293 5.61921 5.63080 5.74530 5.86865 5.95836 6.02344 6.08053 6.12128 6.25361 6.33451 6.37286 6.44976 6.59311 6.72814 6.75223 6.98569 7.18708 7.22775 7.58592 7.67477 7.84351 7.88871 8.33482 9.24582 9.86132 10.55471 11.41483 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016939 B = 0.002208 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.551762 B =12678.586943 C =13522.959724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.075 0.925 9 N -0.596 5.596 10 C 0.173 3.827 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.122 4.122 16 C -0.127 4.127 17 C 0.116 3.884 18 N -0.713 5.713 19 C 0.562 3.438 20 O -0.518 6.518 21 C -0.198 4.198 22 C 0.164 3.836 23 F -0.119 7.119 24 C -0.165 4.165 25 C -0.046 4.046 26 C -0.166 4.166 27 C 0.164 3.836 28 F -0.120 7.120 29 H 0.252 0.748 30 H 0.024 0.976 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.402 0.598 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.407 -25.297 8.664 29.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.049 0.951 15 C -0.162 4.162 16 C -0.165 4.165 17 C -0.006 4.006 18 N -0.364 5.364 19 C 0.345 3.655 20 O -0.394 6.394 21 C -0.203 4.203 22 C 0.143 3.857 23 F -0.098 7.098 24 C -0.184 4.184 25 C -0.064 4.064 26 C -0.184 4.184 27 C 0.143 3.857 28 F -0.098 7.098 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.236 0.764 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.314 -24.321 9.237 28.783 hybrid contribution 0.314 0.816 -0.223 0.903 sum 12.629 -23.505 9.014 28.164 Atomic orbital electron populations 1.69951 1.04976 1.24968 1.56588 1.24900 0.95662 0.97759 1.01947 0.86107 0.78907 0.83941 0.77218 1.20436 1.21812 1.21716 1.19010 0.90348 0.82338 1.43689 0.90768 1.44555 1.06191 1.01341 1.79969 1.21404 0.85212 0.89996 0.98600 1.23012 0.97505 0.99836 0.98557 1.22588 0.97176 0.97105 0.99344 1.20926 0.93924 0.87024 0.92655 0.95143 1.22035 0.99885 0.94532 0.99764 1.21845 0.99832 1.00422 0.94437 1.21630 0.96534 0.84237 0.98230 1.46080 1.53765 1.19025 1.17484 1.17743 0.79016 0.86009 0.82753 1.90860 1.59838 1.43814 1.44839 1.20017 0.95050 0.96488 1.08781 1.17340 0.88194 0.85640 0.94478 1.91601 1.79227 1.58224 1.80699 1.21213 1.02070 0.91812 1.03335 1.21020 0.92869 0.98753 0.93763 1.21209 0.96098 0.96757 1.04379 1.17330 0.78994 0.92987 0.96348 1.91596 1.33175 1.96019 1.88993 0.93803 0.95831 0.91311 0.92576 0.92509 0.92669 0.92038 0.92180 0.91540 0.91628 0.91614 0.90961 0.91046 0.76403 0.83217 0.83282 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.58 55.49 0.59 -26.56 16 2 C -0.01 -0.17 5.47 -17.43 -0.10 -0.27 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 7 C -0.23 -6.24 9.71 -15.06 -0.15 -6.39 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -15.06 3.13 -162.58 -0.51 -15.56 16 10 C 0.17 4.22 5.41 -2.53 -0.01 4.20 16 11 C -0.15 -2.85 7.08 -24.59 -0.17 -3.02 16 12 C -0.12 -2.12 5.71 -24.90 -0.14 -2.26 16 13 C 0.16 3.25 3.16 -66.96 -0.21 3.03 16 14 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 15 C -0.12 -2.18 4.71 -26.73 -0.13 -2.30 16 16 C -0.13 -1.68 5.10 -26.73 -0.14 -1.82 16 17 C 0.12 1.59 5.68 -4.03 -0.02 1.57 16 18 N -0.71 -8.59 5.55 -61.34 -0.34 -8.93 16 19 C 0.56 7.85 6.54 -12.47 -0.08 7.77 16 20 O -0.52 -9.42 17.11 5.28 0.09 -9.33 16 21 C -0.20 -2.13 5.64 -104.86 -0.59 -2.73 16 22 C 0.16 1.51 7.29 -38.96 -0.28 1.22 16 23 F -0.12 -1.32 16.83 2.25 0.04 -1.28 16 24 C -0.17 -0.93 10.01 -39.56 -0.40 -1.33 16 25 C -0.05 -0.18 10.03 -39.53 -0.40 -0.58 16 26 C -0.17 -0.92 10.01 -39.56 -0.40 -1.31 16 27 C 0.16 1.49 7.29 -38.97 -0.28 1.21 16 28 F -0.12 -1.29 16.83 2.25 0.04 -1.26 16 29 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.02 0.62 8.06 -51.93 -0.42 0.21 16 31 H 0.07 1.87 6.93 -51.93 -0.36 1.51 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.01 7.76 -51.93 -0.40 0.61 16 36 H 0.06 1.14 8.02 -51.93 -0.42 0.72 16 37 H 0.07 1.32 7.84 -51.93 -0.41 0.91 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.79 7.65 -51.93 -0.40 0.39 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.40 3.68 8.46 -40.82 -0.35 3.34 16 43 H 0.15 0.49 8.06 -52.48 -0.42 0.07 16 44 H 0.15 0.10 8.06 -52.49 -0.42 -0.32 16 45 H 0.15 0.48 8.06 -52.49 -0.42 0.05 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -33.99 381.76 -9.39 -43.37 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.52 Total: -0.52 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -3.50 Total: -3.01 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.26 Total: -51.06 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.08 Total: -2.54 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.99 -9.39 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713440800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.648 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds