Wall clock time and date at job start Sat Apr 11 2020 05:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99716 * 2 1 4 4 H 1.48504 * 109.46892 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47418 * 300.00197 * 3 2 1 6 6 H 1.48500 * 109.46975 * 60.00472 * 3 2 1 7 7 C 1.38805 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00125 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64503 * 14.63353 * 9 7 2 11 11 C 1.54910 * 104.82705 * 155.90694 * 10 9 7 12 12 C 1.55151 * 101.58432 * 37.01169 * 11 10 9 13 13 C 1.47015 * 125.64962 * 194.67763 * 9 7 2 14 14 H 1.09003 * 109.88457 * 300.59814 * 13 9 7 15 15 C 1.52996 * 109.88280 * 61.60165 * 13 9 7 16 16 C 1.53000 * 109.47252 * 185.23848 * 15 13 9 17 17 C 1.53009 * 109.47023 * 174.95171 * 16 15 13 18 18 N 1.46506 * 109.46955 * 180.02562 * 17 16 15 19 19 C 1.34768 * 120.00072 * 179.97438 * 18 17 16 20 20 O 1.21594 * 120.00013 * 359.97438 * 19 18 17 21 21 C 1.47544 * 120.00243 * 179.97438 * 19 18 17 22 22 C 1.39899 * 120.18476 * 89.72322 * 21 19 18 23 23 F 1.35099 * 120.10014 * 0.02562 * 22 21 19 24 24 C 1.38224 * 119.80038 * 179.74589 * 22 21 19 25 25 C 1.38305 * 120.19161 * 0.53315 * 24 22 21 26 26 C 1.38307 * 120.38287 * 359.74323 * 25 24 22 27 27 C 1.38221 * 120.18955 * 359.97388 * 26 25 24 28 28 F 1.35095 * 120.09357 * 180.02562 * 27 26 25 29 29 H 0.96998 * 120.00044 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36948 * 274.74374 * 10 9 7 31 31 H 1.09004 * 110.36922 * 37.07547 * 10 9 7 32 32 H 1.09007 * 111.00007 * 155.08208 * 11 10 9 33 33 H 1.08996 * 111.00809 * 278.89195 * 11 10 9 34 34 H 1.08999 * 110.72713 * 206.13107 * 12 11 10 35 35 H 1.09004 * 110.72288 * 82.85504 * 12 11 10 36 36 H 1.09004 * 109.46878 * 65.24230 * 15 13 9 37 37 H 1.09004 * 109.47464 * 305.24167 * 15 13 9 38 38 H 1.08998 * 109.47152 * 54.95716 * 16 15 13 39 39 H 1.09004 * 109.47229 * 294.94862 * 16 15 13 40 40 H 1.09004 * 109.46866 * 299.99913 * 17 16 15 41 41 H 1.08996 * 109.47153 * 60.00557 * 17 16 15 42 42 H 0.97004 * 119.99658 * 0.02562 * 18 17 16 43 43 H 1.08005 * 119.90251 * 180.29669 * 24 22 21 44 44 H 1.07999 * 119.80926 * 179.76364 * 25 24 22 45 45 H 1.08001 * 119.90254 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1079 -2.5525 -0.3027 11 6 -0.2477 -4.0214 -0.7746 12 6 0.7643 -4.7442 0.1531 13 6 1.8982 -3.7080 0.3016 14 1 2.7026 -3.9324 -0.3988 15 6 2.4357 -3.7265 1.7339 16 6 3.1447 -5.0568 1.9955 17 6 3.7904 -5.0266 3.3823 18 7 4.4698 -6.3003 3.6326 19 6 5.1138 -6.5027 4.7990 20 8 5.1314 -5.6281 5.6435 21 6 5.7975 -7.7856 5.0512 22 6 7.1368 -7.9532 4.6832 23 9 7.8098 -6.9399 4.0955 24 6 7.7711 -9.1566 4.9281 25 6 7.0824 -10.1970 5.5249 26 6 5.7566 -10.0418 5.8867 27 6 5.1085 -8.8432 5.6545 28 9 3.8135 -8.6935 6.0091 29 1 -0.4850 0.8400 0.0004 30 1 -0.7062 -2.3831 0.5925 31 1 -0.4092 -1.8689 -1.0964 32 1 -1.2604 -4.3898 -0.6103 33 1 0.0383 -4.1244 -1.8213 34 1 1.1341 -5.6561 -0.3157 35 1 0.3125 -4.9628 1.1207 36 1 1.6081 -3.6120 2.4341 37 1 3.1411 -2.9063 1.8679 38 1 3.9144 -5.2131 1.2398 39 1 2.4200 -5.8699 1.9498 40 1 4.5150 -4.2136 3.4280 41 1 3.0208 -4.8704 4.1382 42 1 4.4566 -6.9976 2.9583 43 1 8.8064 -9.2862 4.6490 44 1 7.5830 -11.1359 5.7099 45 1 5.2261 -10.8595 6.3519 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713440800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:43 Heat of formation + Delta-G solvation = -108.446843 kcal Electronic energy + Delta-G solvation = -28469.047726 eV Core-core repulsion = 24121.773728 eV Total energy + Delta-G solvation = -4347.273998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.22556 -50.20176 -41.14471 -39.56867 -39.30099 -36.84016 -34.74950 -33.85092 -32.41911 -31.45742 -31.24388 -29.51926 -26.73822 -26.10954 -24.69459 -23.95453 -22.80651 -21.97984 -21.88142 -20.78473 -19.50572 -18.83224 -18.64595 -18.48154 -17.62195 -17.02156 -16.87806 -16.81836 -16.63437 -16.50988 -16.32651 -16.03975 -15.70731 -15.54010 -15.35802 -15.00852 -14.38255 -13.97901 -13.84651 -13.72545 -13.61728 -13.20820 -13.14082 -13.02637 -13.01345 -12.92693 -12.80053 -12.68984 -12.29989 -11.97521 -11.89334 -11.72756 -11.57589 -11.37270 -11.30641 -11.14795 -10.67159 -10.36348 -10.23494 -9.89934 -8.78600 -7.86874 -5.22496 -0.35872 -0.13991 1.16021 1.42478 1.43757 1.53520 1.87229 2.24131 2.48353 2.62391 3.25054 3.30625 3.34562 3.67042 3.71783 3.73733 3.88588 3.96174 4.11815 4.13141 4.21835 4.32012 4.38098 4.56504 4.58340 4.61271 4.71694 4.78947 4.81056 4.88845 4.94516 4.98161 5.00813 5.09454 5.11668 5.16677 5.23947 5.31411 5.48666 5.49710 5.62353 5.67326 5.68513 5.79191 6.21962 6.27021 6.88510 7.11984 7.81480 8.48595 9.24908 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016939 B = 0.002208 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.551762 B =12678.586943 C =13522.959724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.619 5.619 10 C 0.174 3.826 11 C -0.137 4.137 12 C -0.111 4.111 13 C 0.152 3.848 14 H 0.037 0.963 15 C -0.112 4.112 16 C -0.107 4.107 17 C 0.122 3.878 18 N -0.700 5.700 19 C 0.557 3.443 20 O -0.574 6.574 21 C -0.223 4.223 22 C 0.139 3.861 23 F -0.139 7.139 24 C -0.151 4.151 25 C -0.024 4.024 26 C -0.150 4.150 27 C 0.141 3.859 28 F -0.138 7.138 29 H 0.246 0.754 30 H -0.009 1.009 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.418 0.582 43 H 0.178 0.822 44 H 0.198 0.802 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.380 -29.817 8.557 34.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.222 1.222 7 C -0.359 4.359 8 H 0.093 0.907 9 N -0.343 5.343 10 C 0.049 3.951 11 C -0.175 4.175 12 C -0.149 4.149 13 C 0.046 3.954 14 H 0.055 0.945 15 C -0.153 4.153 16 C -0.145 4.145 17 C -0.002 4.002 18 N -0.351 5.351 19 C 0.343 3.657 20 O -0.453 6.453 21 C -0.228 4.228 22 C 0.119 3.881 23 F -0.117 7.117 24 C -0.169 4.169 25 C -0.042 4.042 26 C -0.169 4.169 27 C 0.121 3.879 28 F -0.116 7.116 29 H 0.055 0.945 30 H 0.009 0.991 31 H 0.048 0.952 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.255 0.745 43 H 0.196 0.804 44 H 0.215 0.785 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 14.310 -28.907 9.099 33.514 hybrid contribution -0.240 2.116 -0.176 2.137 sum 14.070 -26.792 8.923 31.550 Atomic orbital electron populations 1.70157 1.06293 1.25084 1.58296 1.25676 0.96515 1.00952 1.02787 0.85126 0.78324 0.79991 0.76664 1.19118 1.21759 1.22212 1.19326 0.90677 0.83755 1.42178 0.90692 1.44868 1.06608 1.02571 1.80302 1.21211 0.84644 0.93205 0.96034 1.22882 0.99738 0.95655 0.99256 1.22586 0.95195 0.97342 0.99773 1.21221 0.95245 0.85510 0.93460 0.94534 1.21828 0.98934 0.96304 0.98186 1.21636 1.00347 0.98276 0.94221 1.21402 0.95813 0.84668 0.98287 1.45935 1.52812 1.18701 1.17603 1.18359 0.78397 0.86795 0.82198 1.90814 1.61933 1.46042 1.46549 1.19862 0.95971 0.95427 1.11542 1.17696 0.87829 0.86668 0.95870 1.91549 1.79470 1.59401 1.81298 1.21629 1.03232 0.90312 1.01757 1.21606 0.91917 0.99734 0.90907 1.21631 0.96722 0.95702 1.02807 1.17673 0.78626 0.94057 0.97557 1.91547 1.34444 1.96236 1.89372 0.94503 0.99127 0.95179 0.90081 0.91686 0.88437 0.91133 0.93897 0.94430 0.89926 0.88982 0.92919 0.92453 0.74460 0.80423 0.78523 0.80323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.76 10.58 21.65 0.23 -58.53 16 2 C -0.07 -3.88 5.47 84.86 0.46 -3.42 16 3 Si 0.97 47.41 29.55 68.60 2.03 49.44 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 7 C -0.23 -13.10 9.71 84.03 0.82 -12.29 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.62 -31.91 3.13 -668.29 -2.09 -34.00 16 10 C 0.17 8.75 5.41 86.86 0.47 9.22 16 11 C -0.14 -4.94 7.08 31.98 0.23 -4.71 16 12 C -0.11 -3.47 5.71 31.78 0.18 -3.28 16 13 C 0.15 5.93 3.16 45.34 0.14 6.07 16 14 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 15 C -0.11 -4.03 4.71 30.59 0.14 -3.89 16 16 C -0.11 -2.67 5.10 30.60 0.16 -2.51 16 17 C 0.12 3.40 5.68 86.38 0.49 3.89 16 18 N -0.70 -16.90 5.55 -466.24 -2.59 -19.49 16 19 C 0.56 16.20 6.54 86.70 0.57 16.77 16 20 O -0.57 -22.26 17.11 -4.01 -0.07 -22.33 16 21 C -0.22 -4.75 5.64 -20.02 -0.11 -4.87 16 22 C 0.14 2.41 7.29 22.67 0.17 2.57 16 23 F -0.14 -3.07 16.83 44.97 0.76 -2.31 16 24 C -0.15 -1.14 10.01 22.28 0.22 -0.92 16 25 C -0.02 -0.07 10.03 22.30 0.22 0.16 16 26 C -0.15 -1.09 10.01 22.28 0.22 -0.87 16 27 C 0.14 2.39 7.29 22.67 0.17 2.55 16 28 F -0.14 -2.94 16.83 44.97 0.76 -2.19 16 29 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 30 H -0.01 -0.52 8.06 -2.39 -0.02 -0.54 16 31 H 0.03 1.71 6.93 -2.38 -0.02 1.69 16 32 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.07 2.10 7.76 -2.39 -0.02 2.08 16 36 H 0.04 1.66 8.02 -2.39 -0.02 1.64 16 37 H 0.04 1.54 7.84 -2.38 -0.02 1.52 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.09 1.89 7.65 -2.39 -0.02 1.87 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.42 7.16 8.46 -92.71 -0.78 6.38 16 43 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 44 H 0.20 -1.20 8.06 -2.91 -0.02 -1.23 16 45 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 Total: -1.00 -81.76 381.76 3.80 -77.96 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 0.23 Total: 6.98 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 4.55 Total: 4.48 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -4.45 Total: -112.02 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.07 Total: -22.33 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 1.51 Total: -4.50 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -81.76 3.80 -77.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713440800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.484 kcal (2) G-P(sol) polarization free energy of solvation -81.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds