Wall clock time and date at job start Sat Apr 11 2020 05:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99658 * 2 1 4 4 H 1.48495 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47040 * 300.00056 * 3 2 1 6 6 H 1.48501 * 109.47302 * 60.00286 * 3 2 1 7 7 C 1.38806 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00269 * 160.27844 * 7 2 1 9 9 N 1.36934 * 119.99964 * 340.27091 * 7 2 1 10 10 C 1.46494 * 120.00171 * 320.54068 * 9 7 2 11 11 C 1.53001 * 109.47158 * 269.99638 * 10 9 7 12 12 C 1.53005 * 109.47335 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47203 * 180.02562 * 12 11 10 14 14 C 1.34771 * 119.99639 * 180.02562 * 13 12 11 15 15 O 1.21281 * 120.00522 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99726 * 179.97438 * 14 13 12 17 17 C 1.50697 * 109.47144 * 179.97438 * 16 14 13 18 18 C 1.38256 * 120.00344 * 264.72339 * 17 16 14 19 19 C 1.38219 * 120.07085 * 179.76787 * 18 17 16 20 20 C 1.38249 * 120.07038 * 0.50950 * 19 18 17 21 21 C 1.38372 * 120.00383 * 359.74686 * 20 19 18 22 22 F 1.35092 * 120.03758 * 179.97438 * 21 20 19 23 23 C 1.38371 * 120.00146 * 85.00008 * 17 16 14 24 24 F 1.35105 * 120.03384 * 0.02562 * 23 17 16 25 25 C 1.46502 * 119.99656 * 140.53918 * 9 7 2 26 26 C 1.52997 * 117.50203 * 3.29086 * 25 9 7 27 27 C 1.52997 * 117.50023 * 294.66601 * 25 9 7 28 28 H 0.97000 * 120.00354 * 355.01078 * 1 2 3 29 29 H 1.09002 * 109.47288 * 29.99818 * 10 9 7 30 30 H 1.09006 * 109.47540 * 149.99906 * 10 9 7 31 31 H 1.08995 * 109.47516 * 300.00133 * 11 10 9 32 32 H 1.08999 * 109.47295 * 60.00330 * 11 10 9 33 33 H 1.08995 * 109.47029 * 300.00556 * 12 11 10 34 34 H 1.08999 * 109.46557 * 60.00003 * 12 11 10 35 35 H 0.96997 * 120.00071 * 0.02562 * 13 12 11 36 36 H 1.08995 * 109.47463 * 300.00065 * 16 14 13 37 37 H 1.08999 * 109.47394 * 60.00290 * 16 14 13 38 38 H 1.08000 * 119.96373 * 0.02562 * 18 17 16 39 39 H 1.08007 * 119.95939 * 180.25350 * 19 18 17 40 40 H 1.08007 * 119.99936 * 179.76658 * 20 19 18 41 41 H 1.09008 * 115.54694 * 149.00279 * 25 9 7 42 42 H 1.08996 * 117.49829 * 359.97438 * 26 25 9 43 43 H 1.08995 * 117.50052 * 145.02543 * 26 25 9 44 44 H 1.09002 * 117.50243 * 214.98368 * 27 25 9 45 45 H 1.09002 * 117.49904 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8912 2.3966 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0427 -1.2293 -0.3162 9 7 1.3859 -2.3533 0.3993 10 6 0.4642 -2.3294 1.5377 11 6 1.2396 -2.6054 2.8275 12 6 0.2771 -2.5798 4.0166 13 7 1.0196 -2.8434 5.2517 14 6 0.3731 -2.8702 6.4339 15 8 -0.8235 -2.6766 6.4753 16 6 1.1368 -3.1420 7.7043 17 6 0.1888 -3.1167 8.8755 18 6 0.0327 -1.9581 9.6137 19 6 -0.8400 -1.9319 10.6852 20 6 -1.5508 -3.0672 11.0276 21 6 -1.3929 -4.2299 10.2941 22 9 -2.0868 -5.3397 10.6284 23 6 -0.5212 -4.2546 9.2157 24 9 -0.3647 -5.3889 8.4986 25 6 1.6397 -3.6090 -0.3115 26 6 2.6700 -3.5849 -1.4423 27 6 1.1796 -3.7019 -1.7677 28 1 -0.4850 0.8368 0.0731 29 1 -0.0096 -1.3498 1.6011 30 1 -0.3002 -3.0947 1.4026 31 1 1.7134 -3.5849 2.7642 32 1 2.0039 -1.8402 2.9628 33 1 -0.1964 -1.6001 4.0798 34 1 -0.4875 -3.3448 3.8816 35 1 1.9765 -2.9987 5.2185 36 1 1.6105 -4.1216 7.6410 37 1 1.9012 -2.3768 7.8395 38 1 0.5902 -1.0714 9.3502 39 1 -0.9636 -1.0247 11.2581 40 1 -2.2296 -3.0465 11.8674 41 1 1.5779 -4.5130 0.2944 42 1 3.1588 -2.6348 -1.6577 43 1 3.2865 -4.4731 -1.5805 44 1 0.8156 -4.6670 -2.1200 45 1 0.6877 -2.8289 -2.1968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713772637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:52 Heat of formation + Delta-G solvation = -61.778191 kcal Electronic energy + Delta-G solvation = -28209.049587 eV Core-core repulsion = 23863.799294 eV Total energy + Delta-G solvation = -4345.250294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.67564 -48.75607 -40.03641 -38.80565 -37.13107 -35.31244 -33.57790 -33.20542 -31.60830 -30.60431 -29.63625 -28.01916 -25.29069 -23.64052 -23.13629 -22.46958 -21.42947 -21.01627 -20.32632 -19.62250 -18.16245 -17.58976 -17.21922 -17.13471 -16.43560 -16.33651 -15.71586 -15.53622 -15.24505 -15.14094 -15.13002 -14.64485 -14.62231 -14.21064 -13.83270 -13.65954 -13.62154 -13.21606 -12.66201 -12.52763 -12.32693 -12.22801 -12.06471 -11.89712 -11.56007 -11.50423 -11.03807 -10.84685 -10.75423 -10.68363 -10.21608 -10.15471 -9.88711 -9.64983 -9.58220 -9.27909 -9.18654 -9.01063 -8.89488 -8.51044 -6.56046 -5.81395 -3.48964 0.63199 0.65418 2.65236 2.93496 3.29482 3.38418 3.39996 3.41169 3.50521 4.02909 4.13722 4.35052 4.40316 4.58520 4.73421 4.81596 4.93479 4.97004 5.08093 5.15839 5.29922 5.41388 5.49368 5.62116 5.63295 5.73476 5.76243 5.90853 5.91304 5.98914 6.12211 6.26887 6.34772 6.36446 6.43460 6.49620 6.64712 6.65595 6.73650 7.03408 7.07730 7.23915 7.57761 7.60083 7.76507 8.26686 8.46592 9.12157 9.73078 10.32039 11.13074 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.002174 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.612862 B =12876.609593 C =13953.921528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.015 3.985 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.552 5.552 10 C 0.154 3.846 11 C -0.145 4.145 12 C 0.121 3.879 13 N -0.724 5.724 14 C 0.510 3.490 15 O -0.536 6.536 16 C -0.106 4.106 17 C -0.069 4.069 18 C -0.089 4.089 19 C -0.099 4.099 20 C -0.128 4.128 21 C 0.066 3.934 22 F -0.130 7.130 23 C 0.082 3.918 24 F -0.126 7.126 25 C 0.120 3.880 26 C -0.196 4.196 27 C -0.222 4.222 28 H 0.255 0.745 29 H 0.095 0.905 30 H 0.029 0.971 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.400 0.600 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 -5.872 21.326 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.186 4.186 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.390 4.390 8 H 0.081 0.919 9 N -0.268 5.268 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.003 4.003 13 N -0.375 5.375 14 C 0.295 3.705 15 O -0.412 6.412 16 C -0.146 4.146 17 C -0.071 4.071 18 C -0.107 4.107 19 C -0.117 4.117 20 C -0.147 4.147 21 C 0.046 3.954 22 F -0.108 7.108 23 C 0.062 3.938 24 F -0.104 7.104 25 C 0.011 3.989 26 C -0.234 4.234 27 C -0.263 4.263 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.234 0.766 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.388 -5.658 21.256 22.040 hybrid contribution 0.736 0.347 -0.244 0.849 sum 2.123 -5.311 21.012 21.777 Atomic orbital electron populations 1.70064 1.05515 1.26138 1.50552 1.25256 0.94999 0.98819 0.99548 0.86380 0.79791 0.84099 0.77426 1.20017 1.21567 1.21346 1.19046 0.93282 0.85009 1.41643 0.91883 1.43353 1.50942 1.03133 1.29405 1.20754 0.90524 1.02700 0.83256 1.22457 0.99214 1.01290 0.95615 1.21474 0.95154 1.01374 0.82253 1.46132 1.12217 1.72308 1.06837 1.20298 0.88068 0.77334 0.84750 1.90738 1.14758 1.48786 1.86937 1.20657 0.97709 1.05848 0.90418 1.19266 0.98260 0.92351 0.97177 1.21021 0.98342 0.96832 0.94502 1.21045 0.95500 0.98011 0.97176 1.21088 1.01634 0.91243 1.00742 1.17640 0.95840 0.84925 0.96964 1.91526 1.77116 1.50488 1.91720 1.17476 0.99761 0.84011 0.92543 1.91526 1.94273 1.48063 1.76537 1.21233 1.00582 0.90622 0.86413 1.23013 0.92197 1.01748 1.06463 1.23346 0.96796 1.00945 1.05173 0.93528 0.88699 0.95295 0.93090 0.91513 0.91433 0.91924 0.76634 0.87375 0.86859 0.84195 0.84099 0.83747 0.89710 0.88513 0.90874 0.91317 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.53 11.50 55.49 0.64 -23.89 16 2 C 0.01 0.39 4.98 -17.44 -0.09 0.31 16 3 Si 0.89 20.76 29.60 -169.99 -5.03 15.73 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.26 -6.73 8.47 -15.06 -0.13 -6.86 16 8 H 0.06 1.65 6.75 -52.49 -0.35 1.29 16 9 N -0.55 -13.07 2.75 -165.66 -0.46 -13.53 16 10 C 0.15 3.38 5.33 -4.04 -0.02 3.36 16 11 C -0.15 -2.54 5.65 -26.73 -0.15 -2.69 16 12 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 13 N -0.72 -9.31 5.56 -60.29 -0.33 -9.65 16 14 C 0.51 6.90 7.82 -10.99 -0.09 6.82 16 15 O -0.54 -9.60 16.03 5.56 0.09 -9.51 16 16 C -0.11 -0.97 5.60 -29.04 -0.16 -1.14 16 17 C -0.07 -0.72 4.38 -104.57 -0.46 -1.17 16 18 C -0.09 -0.73 9.68 -39.58 -0.38 -1.11 16 19 C -0.10 -0.71 10.04 -39.58 -0.40 -1.11 16 20 C -0.13 -1.05 10.02 -39.53 -0.40 -1.45 16 21 C 0.07 0.74 7.31 -39.36 -0.29 0.45 16 22 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16 23 C 0.08 0.99 7.25 -39.36 -0.29 0.71 16 24 F -0.13 -1.70 16.48 2.25 0.04 -1.66 16 25 C 0.12 2.53 6.56 -67.93 -0.45 2.08 16 26 C -0.20 -3.83 9.80 -26.73 -0.26 -4.09 16 27 C -0.22 -4.53 10.36 -26.73 -0.28 -4.81 16 28 H 0.25 6.86 8.32 -40.82 -0.34 6.52 16 29 H 0.10 2.38 5.59 -51.93 -0.29 2.09 16 30 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.40 3.97 8.47 -40.82 -0.35 3.62 16 36 H 0.11 0.84 7.79 -51.93 -0.40 0.43 16 37 H 0.11 0.67 8.05 -51.93 -0.42 0.26 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 40 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.10 2.06 6.46 -51.93 -0.34 1.72 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -31.94 388.17 -9.37 -41.31 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.35 Total: 5.67 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.85 Total: -8.80 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.15 Total: -47.06 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.08 Total: -3.19 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.94 -9.37 -41.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713772637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.469 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds