Wall clock time and date at job start Sat Apr 11 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99658 * 2 1 4 4 H 1.48495 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47040 * 300.00056 * 3 2 1 6 6 H 1.48501 * 109.47302 * 60.00286 * 3 2 1 7 7 C 1.38806 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00269 * 160.27844 * 7 2 1 9 9 N 1.36934 * 119.99964 * 340.27091 * 7 2 1 10 10 C 1.46494 * 120.00171 * 320.54068 * 9 7 2 11 11 C 1.53001 * 109.47158 * 269.99638 * 10 9 7 12 12 C 1.53005 * 109.47335 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47203 * 180.02562 * 12 11 10 14 14 C 1.34771 * 119.99639 * 180.02562 * 13 12 11 15 15 O 1.21281 * 120.00522 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99726 * 179.97438 * 14 13 12 17 17 C 1.50697 * 109.47144 * 179.97438 * 16 14 13 18 18 C 1.38256 * 120.00344 * 264.72339 * 17 16 14 19 19 C 1.38219 * 120.07085 * 179.76787 * 18 17 16 20 20 C 1.38249 * 120.07038 * 0.50950 * 19 18 17 21 21 C 1.38372 * 120.00383 * 359.74686 * 20 19 18 22 22 F 1.35092 * 120.03758 * 179.97438 * 21 20 19 23 23 C 1.38371 * 120.00146 * 85.00008 * 17 16 14 24 24 F 1.35105 * 120.03384 * 0.02562 * 23 17 16 25 25 C 1.46502 * 119.99656 * 140.53918 * 9 7 2 26 26 C 1.52997 * 117.50203 * 3.29086 * 25 9 7 27 27 C 1.52997 * 117.50023 * 294.66601 * 25 9 7 28 28 H 0.97000 * 120.00354 * 355.01078 * 1 2 3 29 29 H 1.09002 * 109.47288 * 29.99818 * 10 9 7 30 30 H 1.09006 * 109.47540 * 149.99906 * 10 9 7 31 31 H 1.08995 * 109.47516 * 300.00133 * 11 10 9 32 32 H 1.08999 * 109.47295 * 60.00330 * 11 10 9 33 33 H 1.08995 * 109.47029 * 300.00556 * 12 11 10 34 34 H 1.08999 * 109.46557 * 60.00003 * 12 11 10 35 35 H 0.96997 * 120.00071 * 0.02562 * 13 12 11 36 36 H 1.08995 * 109.47463 * 300.00065 * 16 14 13 37 37 H 1.08999 * 109.47394 * 60.00290 * 16 14 13 38 38 H 1.08000 * 119.96373 * 0.02562 * 18 17 16 39 39 H 1.08007 * 119.95939 * 180.25350 * 19 18 17 40 40 H 1.08007 * 119.99936 * 179.76658 * 20 19 18 41 41 H 1.09008 * 115.54694 * 149.00279 * 25 9 7 42 42 H 1.08996 * 117.49829 * 359.97438 * 26 25 9 43 43 H 1.08995 * 117.50052 * 145.02543 * 26 25 9 44 44 H 1.09002 * 117.50243 * 214.98368 * 27 25 9 45 45 H 1.09002 * 117.49904 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8912 2.3966 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0427 -1.2293 -0.3162 9 7 1.3859 -2.3533 0.3993 10 6 0.4642 -2.3294 1.5377 11 6 1.2396 -2.6054 2.8275 12 6 0.2771 -2.5798 4.0166 13 7 1.0196 -2.8434 5.2517 14 6 0.3731 -2.8702 6.4339 15 8 -0.8235 -2.6766 6.4753 16 6 1.1368 -3.1420 7.7043 17 6 0.1888 -3.1167 8.8755 18 6 0.0327 -1.9581 9.6137 19 6 -0.8400 -1.9319 10.6852 20 6 -1.5508 -3.0672 11.0276 21 6 -1.3929 -4.2299 10.2941 22 9 -2.0868 -5.3397 10.6284 23 6 -0.5212 -4.2546 9.2157 24 9 -0.3647 -5.3889 8.4986 25 6 1.6397 -3.6090 -0.3115 26 6 2.6700 -3.5849 -1.4423 27 6 1.1796 -3.7019 -1.7677 28 1 -0.4850 0.8368 0.0731 29 1 -0.0096 -1.3498 1.6011 30 1 -0.3002 -3.0947 1.4026 31 1 1.7134 -3.5849 2.7642 32 1 2.0039 -1.8402 2.9628 33 1 -0.1964 -1.6001 4.0798 34 1 -0.4875 -3.3448 3.8816 35 1 1.9765 -2.9987 5.2185 36 1 1.6105 -4.1216 7.6410 37 1 1.9012 -2.3768 7.8395 38 1 0.5902 -1.0714 9.3502 39 1 -0.9636 -1.0247 11.2581 40 1 -2.2296 -3.0465 11.8674 41 1 1.5779 -4.5130 0.2944 42 1 3.1588 -2.6348 -1.6577 43 1 3.2865 -4.4731 -1.5805 44 1 0.8156 -4.6670 -2.1200 45 1 0.6877 -2.8289 -2.1968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713772637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:51 Heat of formation + Delta-G solvation = -79.828584 kcal Electronic energy + Delta-G solvation = -28209.832311 eV Core-core repulsion = 23863.799294 eV Total energy + Delta-G solvation = -4346.033017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.53856 -49.63220 -41.00507 -39.63665 -38.82740 -36.66351 -35.23375 -34.03539 -33.26269 -31.28776 -31.20152 -28.96127 -26.98930 -25.17610 -23.84465 -23.39172 -23.00503 -22.47415 -21.61539 -21.20938 -18.97098 -18.35811 -18.28323 -18.14620 -17.93326 -17.28908 -17.23973 -16.84389 -16.58919 -16.32718 -16.03555 -15.81233 -15.72886 -15.48243 -15.14329 -14.83227 -14.52876 -14.35489 -14.06364 -13.88784 -13.64917 -13.31865 -13.10985 -13.02370 -12.81025 -12.67095 -12.57871 -12.44061 -12.30706 -12.21347 -11.98388 -11.85962 -11.41661 -11.28480 -11.06100 -10.87202 -10.48427 -10.09927 -9.91913 -9.74649 -8.48778 -7.77179 -5.50067 -0.06185 -0.04567 1.43876 1.48112 1.57284 1.61408 2.10730 2.47927 2.53226 2.79308 3.17184 3.26194 3.41678 3.44201 3.52417 3.75089 3.86821 3.97730 4.16688 4.19277 4.28913 4.32632 4.33721 4.47557 4.49752 4.56452 4.61034 4.76239 4.79364 4.87080 4.95276 4.96907 4.98413 5.08182 5.13167 5.15756 5.27642 5.37414 5.45122 5.48363 5.56572 5.69370 5.76943 5.82897 6.48201 6.56593 7.17240 7.24982 7.85326 8.38159 9.12113 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.002174 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.612862 B =12876.609593 C =13953.921528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.035 4.035 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.297 1.297 6 H -0.287 1.287 7 C -0.257 4.257 8 H 0.060 0.940 9 N -0.569 5.569 10 C 0.154 3.846 11 C -0.121 4.121 12 C 0.134 3.866 13 N -0.714 5.714 14 C 0.508 3.492 15 O -0.585 6.585 16 C -0.097 4.097 17 C -0.085 4.085 18 C -0.089 4.089 19 C -0.090 4.090 20 C -0.124 4.124 21 C 0.038 3.962 22 F -0.144 7.144 23 C 0.049 3.951 24 F -0.144 7.144 25 C 0.103 3.897 26 C -0.178 4.178 27 C -0.224 4.224 28 H 0.250 0.750 29 H 0.060 0.940 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.417 0.583 36 H 0.123 0.877 37 H 0.154 0.846 38 H 0.168 0.832 39 H 0.179 0.821 40 H 0.170 0.830 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 -5.754 22.964 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.233 4.233 3 Si 0.780 3.220 4 H -0.188 1.188 5 H -0.224 1.224 6 H -0.213 1.213 7 C -0.387 4.387 8 H 0.078 0.922 9 N -0.286 5.286 10 C 0.027 3.973 11 C -0.161 4.161 12 C 0.009 3.991 13 N -0.366 5.366 14 C 0.295 3.705 15 O -0.465 6.465 16 C -0.136 4.136 17 C -0.086 4.086 18 C -0.107 4.107 19 C -0.108 4.108 20 C -0.143 4.143 21 C 0.018 3.982 22 F -0.123 7.123 23 C 0.029 3.971 24 F -0.123 7.123 25 C -0.006 4.006 26 C -0.217 4.217 27 C -0.265 4.265 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.254 0.746 36 H 0.141 0.859 37 H 0.171 0.829 38 H 0.185 0.815 39 H 0.196 0.804 40 H 0.187 0.813 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.130 0.870 44 H 0.117 0.883 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.559 -5.566 22.902 23.836 hybrid contribution 0.046 0.287 -0.762 0.816 sum 3.605 -5.279 22.140 23.044 Atomic orbital electron populations 1.70197 1.06854 1.26329 1.52519 1.25917 0.95580 1.01595 1.00177 0.85460 0.79181 0.80548 0.76765 1.18825 1.22409 1.21332 1.19209 0.93160 0.86008 1.40355 0.92227 1.43571 1.50965 1.03615 1.30472 1.20658 0.90858 1.00743 0.85005 1.22082 0.98365 1.01894 0.93752 1.21085 0.94789 0.99907 0.83318 1.45943 1.12964 1.71897 1.05774 1.21082 0.87701 0.75845 0.85867 1.90719 1.17135 1.50975 1.87678 1.20710 0.97617 1.08017 0.87288 1.19525 0.98616 0.92490 0.97963 1.21472 0.98260 0.96810 0.94134 1.21535 0.93882 0.98737 0.96622 1.21474 1.01640 0.90410 1.00729 1.18053 0.96545 0.85639 0.97920 1.91478 1.77514 1.51410 1.91898 1.17913 1.01419 0.84333 0.93452 1.91461 1.94579 1.49144 1.77119 1.21562 1.01719 0.90423 0.86855 1.23016 0.91745 1.02325 1.04567 1.23261 0.97689 1.00783 1.04760 0.94113 0.92163 0.95542 0.91166 0.92232 0.93661 0.92865 0.74569 0.85882 0.82868 0.81480 0.80382 0.81296 0.86953 0.90697 0.87025 0.88279 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.67 11.50 21.65 0.25 -52.42 16 2 C -0.04 -1.88 4.98 84.86 0.42 -1.46 16 3 Si 0.95 43.23 29.60 68.60 2.03 45.26 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 7 C -0.26 -13.37 8.47 84.03 0.71 -12.65 16 8 H 0.06 3.11 6.75 -2.91 -0.02 3.09 16 9 N -0.57 -26.94 2.75 -678.04 -1.86 -28.80 16 10 C 0.15 6.83 5.33 86.38 0.46 7.29 16 11 C -0.12 -4.13 5.65 30.60 0.17 -3.96 16 12 C 0.13 4.28 5.67 86.38 0.49 4.77 16 13 N -0.71 -17.38 5.56 -463.06 -2.57 -19.95 16 14 C 0.51 13.18 7.82 87.66 0.69 13.87 16 15 O -0.58 -21.13 16.03 -3.03 -0.05 -21.18 16 16 C -0.10 -1.55 5.60 29.10 0.16 -1.39 16 17 C -0.08 -1.63 4.38 -19.83 -0.09 -1.71 16 18 C -0.09 -1.21 9.68 22.27 0.22 -0.99 16 19 C -0.09 -1.00 10.04 22.27 0.22 -0.77 16 20 C -0.12 -1.82 10.02 22.30 0.22 -1.59 16 21 C 0.04 0.86 7.31 22.41 0.16 1.02 16 22 F -0.14 -3.62 17.18 44.97 0.77 -2.85 16 23 C 0.05 1.19 7.25 22.41 0.16 1.35 16 24 F -0.14 -4.06 16.48 44.97 0.74 -3.32 16 25 C 0.10 4.14 6.56 44.99 0.30 4.44 16 26 C -0.18 -6.60 9.80 30.59 0.30 -6.30 16 27 C -0.22 -8.94 10.36 30.59 0.32 -8.62 16 28 H 0.25 13.97 8.32 -92.71 -0.77 13.19 16 29 H 0.06 3.14 5.59 -2.39 -0.01 3.13 16 30 H 0.03 1.15 8.07 -2.38 -0.02 1.13 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.42 7.23 8.47 -92.71 -0.79 6.44 16 36 H 0.12 1.63 7.79 -2.39 -0.02 1.61 16 37 H 0.15 1.19 8.05 -2.39 -0.02 1.17 16 38 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.18 0.63 8.06 -2.91 -0.02 0.60 16 40 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.11 3.91 8.14 -2.38 -0.02 3.89 16 42 H 0.07 3.11 6.46 -2.39 -0.02 3.10 16 43 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -73.56 388.17 4.46 -69.10 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.23 Total: 20.89 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 4.92 Total: -6.73 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -4.19 Total: -101.17 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 1.51 Total: -6.17 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -73.56 4.46 -69.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713772637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.729 kcal (2) G-P(sol) polarization free energy of solvation -73.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds