Wall clock time and date at job start Sat Apr 11 2020 05:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99679 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99325 * 3 2 1 5 5 H 1.48500 * 109.46886 * 30.00019 * 3 2 1 6 6 H 1.48504 * 109.46927 * 149.99791 * 3 2 1 7 7 C 1.38811 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00004 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00060 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47246 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.52670 * 55.07325 * 11 10 9 13 13 C 1.53037 * 109.49913 * 175.16210 * 11 10 9 14 14 C 1.53034 * 109.53878 * 181.31479 * 13 11 10 15 15 C 1.53626 * 109.24347 * 298.50912 * 14 13 11 16 16 N 1.46923 * 108.54032 * 54.85620 * 15 14 13 17 17 C 1.34777 * 120.63109 * 126.37100 * 16 15 14 18 18 O 1.21281 * 120.00243 * 179.71865 * 17 16 15 19 19 C 1.50703 * 119.99792 * 359.72025 * 17 16 15 20 20 C 1.50701 * 109.46992 * 179.97438 * 19 17 16 21 21 C 1.38203 * 120.00198 * 265.01889 * 20 19 17 22 22 C 1.38431 * 120.00243 * 179.97438 * 21 20 19 23 23 F 1.35101 * 120.00030 * 179.97438 * 22 21 20 24 24 C 1.38469 * 119.99609 * 359.70032 * 22 21 20 25 25 C 1.38157 * 120.00377 * 0.58202 * 24 22 21 26 26 C 1.38435 * 119.99923 * 84.99855 * 20 19 17 27 27 F 1.35100 * 120.00091 * 0.02562 * 26 20 19 28 28 C 1.46929 * 118.74185 * 306.09598 * 16 15 14 29 29 H 0.96996 * 120.00554 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99860 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.46952 * 59.99521 * 10 9 7 32 32 H 1.09004 * 109.46902 * 299.99814 * 10 9 7 33 33 H 1.09005 * 109.45830 * 301.33310 * 13 11 10 34 34 H 1.08996 * 109.46040 * 61.30491 * 13 11 10 35 35 H 1.09004 * 109.49983 * 58.58557 * 14 13 11 36 36 H 1.08996 * 109.49926 * 178.64705 * 14 13 11 37 37 H 1.08995 * 109.73721 * 295.11933 * 15 14 13 38 38 H 1.08995 * 109.66405 * 174.54615 * 15 14 13 39 39 H 1.08998 * 109.47103 * 59.99892 * 19 17 16 40 40 H 1.08995 * 109.46934 * 299.99529 * 19 17 16 41 41 H 1.08001 * 120.00031 * 0.02562 * 21 20 19 42 42 H 1.08004 * 119.99976 * 180.31492 * 24 22 21 43 43 H 1.08002 * 120.00488 * 179.72250 * 25 24 22 44 44 H 1.08998 * 109.58747 * 173.65416 * 28 16 15 45 45 H 1.09002 * 109.58187 * 294.07216 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0641 -4.8197 0.0008 12 1 0.3812 -4.7147 -0.8424 13 6 1.8249 -6.1421 -0.1197 14 6 0.8296 -7.3040 -0.1537 15 6 0.0301 -7.3244 1.1580 16 7 -0.5887 -6.0056 1.3485 17 6 -1.9148 -5.8936 1.5615 18 8 -2.4130 -4.7996 1.7224 19 6 -2.7787 -7.1279 1.5996 20 6 -4.2106 -6.7312 1.8514 21 6 -4.7140 -6.7399 3.1384 22 6 -6.0292 -6.3750 3.3697 23 9 -6.5215 -6.3841 4.6278 24 6 -6.8385 -5.9954 2.3123 25 6 -6.3370 -5.9922 1.0249 26 6 -5.0216 -6.3577 0.7934 27 9 -4.5295 -6.3492 -0.4647 28 6 0.2664 -4.8115 1.3086 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6843 -3.7140 0.8921 32 1 2.6856 -3.7149 -0.8879 33 1 2.4127 -6.1405 -1.0377 34 1 2.4892 -6.2582 0.7366 35 1 0.1490 -7.1756 -0.9954 36 1 1.3708 -8.2437 -0.2637 37 1 0.6976 -7.5389 1.9926 38 1 -0.7460 -8.0877 1.1027 39 1 -2.4381 -7.7851 2.3996 40 1 -2.7084 -7.6501 0.6455 41 1 -4.0812 -7.0306 3.9639 42 1 -7.8632 -5.7058 2.4933 43 1 -6.9696 -5.7004 0.1996 44 1 -0.3538 -3.9162 1.3529 45 1 0.9528 -4.8252 2.1553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714081731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:54 Heat of formation + Delta-G solvation = -94.693267 kcal Electronic energy + Delta-G solvation = -29282.249584 eV Core-core repulsion = 24935.571986 eV Total energy + Delta-G solvation = -4346.677598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.13031 -49.06540 -40.32598 -39.00416 -37.49088 -34.91796 -33.37843 -32.76552 -31.66235 -30.44201 -29.79839 -28.21716 -25.50486 -25.14051 -23.29986 -23.12885 -22.31384 -21.37983 -20.12807 -18.97169 -17.85108 -17.47172 -17.43106 -17.29794 -16.86710 -15.99721 -15.75369 -15.46141 -15.31874 -14.72484 -14.63183 -14.57487 -14.48227 -14.13194 -13.75673 -13.64389 -13.46818 -13.23847 -13.03102 -12.90690 -12.81611 -12.54870 -12.37046 -12.03156 -11.98633 -11.54226 -11.26538 -11.09105 -10.99976 -10.81917 -10.63783 -10.38655 -10.27961 -9.97409 -9.79806 -9.58155 -9.31763 -8.82828 -8.72275 -8.49725 -6.85984 -5.68465 -2.98466 0.70394 0.77417 2.69266 2.91554 3.24161 3.47982 3.52365 3.54896 3.87262 3.98003 4.17464 4.35871 4.50451 4.62732 4.66942 4.72896 4.82288 4.88027 4.97789 5.00992 5.13342 5.21753 5.32010 5.36033 5.47718 5.64485 5.65309 5.67270 5.73165 5.79617 5.80504 5.84530 5.85897 5.96402 6.10359 6.14128 6.22187 6.40542 6.52865 6.56497 6.65247 6.79159 6.90227 7.48463 7.75435 8.27015 8.49045 9.60002 10.18097 10.52255 11.53778 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.002998 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.802211 B = 9338.050629 C =10921.975374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.105 3.895 16 N -0.611 5.611 17 C 0.512 3.488 18 O -0.520 6.520 19 C -0.103 4.103 20 C -0.070 4.070 21 C -0.113 4.113 22 C 0.089 3.911 23 F -0.136 7.136 24 C -0.125 4.125 25 C -0.123 4.123 26 C 0.108 3.892 27 F -0.130 7.130 28 C 0.121 3.879 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.019 0.981 32 H 0.021 0.979 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.103 0.897 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 -23.539 3.959 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.127 4.127 12 H 0.092 0.908 13 C -0.150 4.150 14 C -0.172 4.172 15 C -0.018 4.018 16 N -0.345 5.345 17 C 0.299 3.701 18 O -0.395 6.395 19 C -0.142 4.142 20 C -0.072 4.072 21 C -0.132 4.132 22 C 0.069 3.931 23 F -0.115 7.115 24 C -0.144 4.144 25 C -0.142 4.142 26 C 0.088 3.912 27 F -0.108 7.108 28 C -0.001 4.001 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.122 0.878 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.266 -22.810 4.062 24.953 hybrid contribution 0.262 0.958 -0.070 0.996 sum -9.004 -21.852 3.992 23.969 Atomic orbital electron populations 1.69675 1.05061 1.25630 1.57372 1.24759 0.95481 0.97663 1.02986 0.86211 0.78626 0.84012 0.77453 1.21774 1.21780 1.20796 1.19200 0.90954 0.84190 1.43025 0.91246 1.42422 1.05955 0.99946 1.89475 1.20630 0.92957 0.85196 0.97953 1.21690 0.97956 0.95125 0.97917 0.90797 1.21518 0.97460 0.93746 1.02317 1.21989 0.98669 0.99153 0.97416 1.21854 0.97454 0.84384 0.98100 1.48165 1.06866 1.08083 1.71406 1.20291 0.82176 0.90501 0.77167 1.90805 1.72525 1.28010 1.48202 1.20664 0.90441 0.97715 1.05424 1.19149 0.94961 1.00986 0.92082 1.20826 0.94119 1.01381 0.96839 1.17565 0.92812 1.03074 0.79602 1.91516 1.87919 1.94298 1.37759 1.20974 1.00969 1.01300 0.91118 1.20970 0.94123 1.01188 0.97925 1.17482 0.92552 1.01675 0.79461 1.91527 1.88025 1.93910 1.37382 1.21734 0.93244 0.87963 0.97130 0.93486 0.78079 0.96290 0.96098 0.91504 0.91762 0.91418 0.90889 0.91184 0.90150 0.87289 0.87331 0.83834 0.83716 0.83539 0.87839 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.35 13.06 55.49 0.72 -28.62 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.21 5.38 -59.91 -0.32 -19.53 16 10 C 0.16 3.26 5.65 -4.04 -0.02 3.24 16 11 C -0.11 -1.75 2.38 -90.50 -0.22 -1.97 16 12 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.11 -1.34 5.16 -26.69 -0.14 -1.47 16 14 C -0.13 -1.24 6.10 -26.39 -0.16 -1.40 16 15 C 0.11 0.95 6.37 -3.49 -0.02 0.93 16 16 N -0.61 -8.29 2.97 -172.50 -0.51 -8.81 16 17 C 0.51 7.61 7.69 -10.98 -0.08 7.52 16 18 O -0.52 -10.46 15.45 5.56 0.09 -10.38 16 19 C -0.10 -1.03 3.95 -29.03 -0.11 -1.14 16 20 C -0.07 -0.80 4.38 -104.56 -0.46 -1.26 16 21 C -0.11 -1.19 9.66 -39.52 -0.38 -1.57 16 22 C 0.09 0.95 7.30 -39.42 -0.29 0.66 16 23 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 24 C -0.12 -1.18 10.02 -39.53 -0.40 -1.57 16 25 C -0.12 -1.24 10.02 -39.52 -0.40 -1.64 16 26 C 0.11 1.31 7.24 -39.42 -0.29 1.02 16 27 F -0.13 -1.74 16.57 2.25 0.04 -1.70 16 28 C 0.12 2.03 5.51 -3.71 -0.02 2.01 16 29 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 30 H 0.39 10.83 6.89 -40.82 -0.28 10.55 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.51 5.93 -51.93 -0.31 0.20 16 39 H 0.11 0.73 7.84 -51.93 -0.41 0.32 16 40 H 0.11 0.91 7.35 -51.93 -0.38 0.53 16 41 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 43 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.10 2.22 6.20 -51.93 -0.32 1.90 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -35.55 376.30 -8.85 -44.40 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.32 Total: 6.68 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -3.23 Total: -4.27 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.11 Total: -56.96 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.55 -8.85 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714081731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.297 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds