Wall clock time and date at job start Sat Apr 11 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99978 * 2 1 4 4 H 1.48498 * 109.47004 * 239.99736 * 3 2 1 5 5 H 1.48501 * 109.47464 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47376 * 120.00186 * 3 2 1 7 7 C 1.38815 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99714 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46750 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.49817 * 305.06130 * 11 10 9 13 13 C 1.53045 * 109.49273 * 185.00012 * 11 10 9 14 14 C 1.53034 * 109.53554 * 178.65196 * 13 11 10 15 15 C 1.53199 * 109.31351 * 61.36303 * 14 13 11 16 16 N 1.46922 * 108.77456 * 305.36396 * 15 14 13 17 17 C 1.34775 * 120.62964 * 233.58675 * 16 15 14 18 18 O 1.21283 * 119.99683 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00195 * 359.97438 * 17 16 15 20 20 C 1.50701 * 109.47131 * 180.02562 * 19 17 16 21 21 C 1.38205 * 120.00210 * 100.00352 * 20 19 17 22 22 C 1.38423 * 120.00379 * 180.02562 * 21 20 19 23 23 F 1.35104 * 120.00297 * 180.02562 * 22 21 20 24 24 C 1.38475 * 119.99778 * 0.26844 * 22 21 20 25 25 C 1.38159 * 119.99902 * 359.45371 * 24 22 21 26 26 C 1.38431 * 120.00248 * 280.01808 * 20 19 17 27 27 F 1.35105 * 119.99644 * 359.96241 * 26 20 19 28 28 C 1.46925 * 118.73797 * 53.85977 * 16 15 14 29 29 H 0.97002 * 119.99695 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00111 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47018 * 59.99492 * 10 9 7 32 32 H 1.08996 * 109.46772 * 300.00096 * 10 9 7 33 33 H 1.08998 * 109.45921 * 58.63121 * 13 11 10 34 34 H 1.08999 * 109.44689 * 298.66108 * 13 11 10 35 35 H 1.08999 * 109.49953 * 301.41322 * 14 13 11 36 36 H 1.09000 * 109.50227 * 181.31458 * 14 13 11 37 37 H 1.08999 * 109.58587 * 185.57629 * 15 14 13 38 38 H 1.08998 * 109.70085 * 65.22703 * 15 14 13 39 39 H 1.09001 * 109.47074 * 60.00285 * 19 17 16 40 40 H 1.08996 * 109.47492 * 300.00245 * 19 17 16 41 41 H 1.07999 * 119.99783 * 0.04130 * 21 20 19 42 42 H 1.08004 * 119.99842 * 179.72729 * 24 22 21 43 43 H 1.08000 * 120.00020 * 180.29348 * 25 24 22 44 44 H 1.09004 * 109.58352 * 65.92636 * 28 16 15 45 45 H 1.08997 * 109.58403 * 186.34594 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0017 11 6 1.0636 -4.8197 0.0021 12 1 0.3783 -4.7121 0.8428 13 6 1.8240 -6.1418 0.1290 14 6 0.8285 -7.3035 0.1633 15 6 0.0323 -7.3273 -1.1453 16 7 -0.5850 -6.0094 -1.3473 17 6 -1.9104 -5.8980 -1.5647 18 8 -2.4079 -4.8044 -1.7304 19 6 -2.7741 -7.1323 -1.6029 20 6 -4.2052 -6.7362 -1.8601 21 6 -4.7350 -6.8467 -3.1318 22 6 -6.0493 -6.4824 -3.3681 23 9 -6.5674 -6.5908 -4.6112 24 6 -6.8317 -6.0020 -2.3315 25 6 -6.3039 -5.8970 -1.0590 26 6 -4.9892 -6.2614 -0.8226 27 9 -4.4714 -6.1539 0.4207 28 6 0.2711 -4.8158 -1.3139 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.6840 -3.7142 0.8921 32 1 2.6853 -3.7149 -0.8878 33 1 2.4089 -6.1375 1.0488 34 1 2.4910 -6.2603 -0.7250 35 1 0.1452 -7.1725 1.0024 36 1 1.3693 -8.2430 0.2772 37 1 -0.7447 -8.0895 -1.0866 38 1 0.7000 -7.5496 -1.9777 39 1 -2.7068 -7.6525 -0.6474 40 1 -2.4310 -7.7913 -2.4004 41 1 -4.1236 -7.2175 -3.9411 42 1 -7.8559 -5.7136 -2.5168 43 1 -6.9156 -5.5268 -0.2495 44 1 0.9598 -4.8363 -2.1585 45 1 -0.3482 -3.9204 -1.3665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714081732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:57 Heat of formation + Delta-G solvation = -94.482277 kcal Electronic energy + Delta-G solvation = -29298.450904 eV Core-core repulsion = 24951.782455 eV Total energy + Delta-G solvation = -4346.668449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.13374 -49.03669 -40.32152 -39.00203 -37.48581 -34.91513 -33.37672 -32.76226 -31.66956 -30.44155 -29.79358 -28.21450 -25.50213 -25.13407 -23.29150 -23.12244 -22.31536 -21.37773 -20.12589 -18.97356 -17.83342 -17.49562 -17.40623 -17.27970 -16.86550 -15.99244 -15.74976 -15.44514 -15.32275 -14.71938 -14.62956 -14.57371 -14.47113 -14.12911 -13.75133 -13.63894 -13.46597 -13.23156 -13.04479 -12.90738 -12.81697 -12.53929 -12.36830 -12.03442 -11.97679 -11.53976 -11.26369 -11.08395 -10.99691 -10.80285 -10.63317 -10.39309 -10.28141 -9.99264 -9.79759 -9.57636 -9.31571 -8.82081 -8.71562 -8.49415 -6.85694 -5.68042 -2.98041 0.70874 0.77566 2.69649 2.91879 3.24254 3.48577 3.52396 3.54272 3.87245 3.99427 4.17630 4.35543 4.51015 4.62907 4.66897 4.72863 4.82677 4.88764 4.98165 5.00929 5.13372 5.21540 5.32407 5.36157 5.47866 5.64726 5.65117 5.67565 5.73241 5.79811 5.80799 5.84629 5.86365 5.96680 6.10521 6.14514 6.22612 6.40714 6.53217 6.56681 6.65192 6.79418 6.90609 7.48709 7.75233 8.27314 8.49524 9.60354 10.18524 10.52732 11.54114 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010986 B = 0.002992 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.120505 B = 9356.197724 C =10944.063143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.106 3.894 16 N -0.611 5.611 17 C 0.512 3.488 18 O -0.520 6.520 19 C -0.102 4.102 20 C -0.072 4.072 21 C -0.114 4.114 22 C 0.088 3.912 23 F -0.137 7.137 24 C -0.125 4.125 25 C -0.124 4.124 26 C 0.111 3.889 27 F -0.129 7.129 28 C 0.121 3.879 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.065 0.935 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 -23.504 -3.890 25.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.032 3.968 11 C -0.127 4.127 12 H 0.092 0.908 13 C -0.150 4.150 14 C -0.172 4.172 15 C -0.018 4.018 16 N -0.345 5.345 17 C 0.299 3.701 18 O -0.395 6.395 19 C -0.142 4.142 20 C -0.073 4.073 21 C -0.133 4.133 22 C 0.068 3.932 23 F -0.115 7.115 24 C -0.143 4.143 25 C -0.142 4.142 26 C 0.091 3.909 27 F -0.107 7.107 28 C -0.001 4.001 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.084 0.916 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.284 -22.771 -3.987 24.912 hybrid contribution 0.275 0.950 0.051 0.991 sum -9.008 -21.821 -3.936 23.933 Atomic orbital electron populations 1.69671 1.05057 1.25737 1.57278 1.24759 0.95486 0.97660 1.02967 0.86283 0.78501 0.83701 0.77763 1.21304 1.21698 1.21334 1.19157 0.90922 0.84207 1.43167 0.91302 1.42411 1.05949 0.99931 1.89487 1.20630 0.92967 0.85216 0.97940 1.21766 0.97978 0.95093 0.97827 0.90772 1.21519 0.97458 0.93754 1.02309 1.21915 0.98687 0.99184 0.97450 1.21759 0.97503 0.84416 0.98088 1.48160 1.06925 1.08156 1.71277 1.20285 0.82183 0.90500 0.77167 1.90805 1.72511 1.28032 1.48185 1.20662 0.90448 0.97720 1.05370 1.19157 0.95063 1.00710 0.92375 1.20826 0.93997 1.01714 0.96785 1.17561 0.92636 1.02766 0.80208 1.91516 1.86923 1.93989 1.39095 1.20976 1.01061 1.00852 0.91446 1.20976 0.93995 1.01278 0.97994 1.17479 0.92300 1.00914 0.80160 1.91536 1.87025 1.93555 1.38628 1.21821 0.93210 0.87972 0.97055 0.93441 0.78076 0.96118 0.96299 0.91504 0.91765 0.91432 0.90858 0.90186 0.91230 0.87328 0.87317 0.83827 0.83725 0.83533 0.91623 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.35 13.06 55.49 0.72 -28.62 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 23.06 29.55 -169.99 -5.02 18.03 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -19.22 5.38 -59.91 -0.32 -19.55 16 10 C 0.16 3.26 5.65 -4.04 -0.02 3.24 16 11 C -0.11 -1.75 2.38 -90.27 -0.22 -1.97 16 12 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 13 C -0.11 -1.34 5.16 -26.69 -0.14 -1.47 16 14 C -0.13 -1.24 6.08 -26.61 -0.16 -1.41 16 15 C 0.11 0.95 6.34 -3.71 -0.02 0.93 16 16 N -0.61 -8.30 2.97 -172.51 -0.51 -8.82 16 17 C 0.51 7.62 7.68 -10.99 -0.08 7.53 16 18 O -0.52 -10.47 15.36 5.55 0.09 -10.38 16 19 C -0.10 -1.02 3.90 -29.04 -0.11 -1.14 16 20 C -0.07 -0.82 4.43 -104.56 -0.46 -1.28 16 21 C -0.11 -1.18 9.65 -39.53 -0.38 -1.56 16 22 C 0.09 0.92 7.30 -39.43 -0.29 0.64 16 23 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 24 C -0.12 -1.18 10.02 -39.52 -0.40 -1.57 16 25 C -0.12 -1.26 10.02 -39.53 -0.40 -1.66 16 26 C 0.11 1.37 7.12 -39.43 -0.28 1.09 16 27 F -0.13 -1.78 16.66 2.25 0.04 -1.74 16 28 C 0.12 2.04 5.55 -3.49 -0.02 2.02 16 29 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 30 H 0.39 10.85 6.92 -40.82 -0.28 10.56 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.51 5.93 -51.93 -0.31 0.20 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.90 7.49 -51.93 -0.39 0.51 16 40 H 0.11 0.72 7.80 -51.93 -0.41 0.32 16 41 H 0.14 1.18 8.04 -52.49 -0.42 0.76 16 42 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 43 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.10 2.22 6.23 -51.93 -0.32 1.89 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -35.57 376.30 -8.86 -44.42 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.33 Total: 6.69 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -3.23 Total: -4.26 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.11 Total: -56.99 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.08 Total: -3.19 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.57 -8.86 -44.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714081732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.058 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds