Wall clock time and date at job start Sat Apr 11 2020 05:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99978 * 2 1 4 4 H 1.48498 * 109.47004 * 239.99736 * 3 2 1 5 5 H 1.48501 * 109.47464 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47376 * 120.00186 * 3 2 1 7 7 C 1.38815 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99714 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46750 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.49817 * 305.06130 * 11 10 9 13 13 C 1.53045 * 109.49273 * 185.00012 * 11 10 9 14 14 C 1.53034 * 109.53554 * 178.65196 * 13 11 10 15 15 C 1.53199 * 109.31351 * 61.36303 * 14 13 11 16 16 N 1.46922 * 108.77456 * 305.36396 * 15 14 13 17 17 C 1.34775 * 120.62964 * 233.58675 * 16 15 14 18 18 O 1.21283 * 119.99683 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00195 * 359.97438 * 17 16 15 20 20 C 1.50701 * 109.47131 * 180.02562 * 19 17 16 21 21 C 1.38205 * 120.00210 * 100.00352 * 20 19 17 22 22 C 1.38423 * 120.00379 * 180.02562 * 21 20 19 23 23 F 1.35104 * 120.00297 * 180.02562 * 22 21 20 24 24 C 1.38475 * 119.99778 * 0.26844 * 22 21 20 25 25 C 1.38159 * 119.99902 * 359.45371 * 24 22 21 26 26 C 1.38431 * 120.00248 * 280.01808 * 20 19 17 27 27 F 1.35105 * 119.99644 * 359.96241 * 26 20 19 28 28 C 1.46925 * 118.73797 * 53.85977 * 16 15 14 29 29 H 0.97002 * 119.99695 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00111 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47018 * 59.99492 * 10 9 7 32 32 H 1.08996 * 109.46772 * 300.00096 * 10 9 7 33 33 H 1.08998 * 109.45921 * 58.63121 * 13 11 10 34 34 H 1.08999 * 109.44689 * 298.66108 * 13 11 10 35 35 H 1.08999 * 109.49953 * 301.41322 * 14 13 11 36 36 H 1.09000 * 109.50227 * 181.31458 * 14 13 11 37 37 H 1.08999 * 109.58587 * 185.57629 * 15 14 13 38 38 H 1.08998 * 109.70085 * 65.22703 * 15 14 13 39 39 H 1.09001 * 109.47074 * 60.00285 * 19 17 16 40 40 H 1.08996 * 109.47492 * 300.00245 * 19 17 16 41 41 H 1.07999 * 119.99783 * 0.04130 * 21 20 19 42 42 H 1.08004 * 119.99842 * 179.72729 * 24 22 21 43 43 H 1.08000 * 120.00020 * 180.29348 * 25 24 22 44 44 H 1.09004 * 109.58352 * 65.92636 * 28 16 15 45 45 H 1.08997 * 109.58403 * 186.34594 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0017 11 6 1.0636 -4.8197 0.0021 12 1 0.3783 -4.7121 0.8428 13 6 1.8240 -6.1418 0.1290 14 6 0.8285 -7.3035 0.1633 15 6 0.0323 -7.3273 -1.1453 16 7 -0.5850 -6.0094 -1.3473 17 6 -1.9104 -5.8980 -1.5647 18 8 -2.4079 -4.8044 -1.7304 19 6 -2.7741 -7.1323 -1.6029 20 6 -4.2052 -6.7362 -1.8601 21 6 -4.7350 -6.8467 -3.1318 22 6 -6.0493 -6.4824 -3.3681 23 9 -6.5674 -6.5908 -4.6112 24 6 -6.8317 -6.0020 -2.3315 25 6 -6.3039 -5.8970 -1.0590 26 6 -4.9892 -6.2614 -0.8226 27 9 -4.4714 -6.1539 0.4207 28 6 0.2711 -4.8158 -1.3139 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.6840 -3.7142 0.8921 32 1 2.6853 -3.7149 -0.8878 33 1 2.4089 -6.1375 1.0488 34 1 2.4910 -6.2603 -0.7250 35 1 0.1452 -7.1725 1.0024 36 1 1.3693 -8.2430 0.2772 37 1 -0.7447 -8.0895 -1.0866 38 1 0.7000 -7.5496 -1.9777 39 1 -2.7068 -7.6525 -0.6474 40 1 -2.4310 -7.7913 -2.4004 41 1 -4.1236 -7.2175 -3.9411 42 1 -7.8559 -5.7136 -2.5168 43 1 -6.9156 -5.5268 -0.2495 44 1 0.9598 -4.8363 -2.1585 45 1 -0.3482 -3.9204 -1.3665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714081732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:56 Heat of formation + Delta-G solvation = -116.866636 kcal Electronic energy + Delta-G solvation = -29299.421563 eV Core-core repulsion = 24951.782455 eV Total energy + Delta-G solvation = -4347.639108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.00105 -49.95732 -41.39884 -39.87198 -38.69567 -36.61018 -34.62876 -33.93374 -33.06439 -31.55023 -31.15484 -29.18361 -27.13698 -26.20594 -24.86772 -24.08413 -23.20266 -22.65626 -21.42170 -20.00067 -19.18136 -18.68808 -18.35276 -18.27640 -18.11939 -16.98786 -16.76533 -16.70426 -16.41104 -16.36232 -15.71388 -15.49467 -15.41988 -15.36040 -15.26375 -14.92059 -14.50491 -14.36207 -14.09593 -14.02153 -13.94235 -13.74860 -13.67001 -13.04212 -12.93128 -12.84962 -12.82334 -12.65415 -12.22168 -12.11535 -11.99717 -11.93338 -11.82178 -11.54651 -11.31101 -10.96967 -10.91458 -10.14736 -9.62474 -9.56794 -9.03016 -7.95776 -5.26732 -0.12229 -0.01221 1.43643 1.48285 1.54605 1.59930 1.94427 2.37128 2.54323 3.07932 3.18638 3.36820 3.38048 3.55403 3.62869 3.77742 3.90724 3.92463 3.97696 4.08686 4.14029 4.21806 4.30384 4.34311 4.41173 4.47262 4.63330 4.71222 4.76666 4.84417 4.90435 4.92052 4.93105 4.95917 4.99088 5.03192 5.07254 5.15075 5.24827 5.35091 5.45807 5.51418 5.55198 5.74421 6.24293 6.43912 7.17762 7.29660 8.06490 8.28581 9.27496 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010986 B = 0.002992 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.120505 B = 9356.197724 C =10944.063143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.978 3.022 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.157 3.843 11 C -0.094 4.094 12 H 0.047 0.953 13 C -0.107 4.107 14 C -0.129 4.129 15 C 0.097 3.903 16 N -0.608 5.608 17 C 0.502 3.498 18 O -0.587 6.587 19 C -0.092 4.092 20 C -0.084 4.084 21 C -0.116 4.116 22 C 0.076 3.924 23 F -0.139 7.139 24 C -0.121 4.121 25 C -0.128 4.128 26 C 0.081 3.919 27 F -0.145 7.145 28 C 0.128 3.872 29 H 0.250 0.750 30 H 0.370 0.630 31 H 0.025 0.975 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.152 0.848 41 H 0.166 0.834 42 H 0.170 0.830 43 H 0.164 0.836 44 H 0.071 0.929 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 -26.379 -4.426 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.807 3.193 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.380 4.380 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.031 3.969 11 C -0.114 4.114 12 H 0.066 0.934 13 C -0.145 4.145 14 C -0.167 4.167 15 C -0.024 4.024 16 N -0.341 5.341 17 C 0.291 3.709 18 O -0.467 6.467 19 C -0.131 4.131 20 C -0.086 4.086 21 C -0.135 4.135 22 C 0.057 3.943 23 F -0.118 7.118 24 C -0.140 4.140 25 C -0.147 4.147 26 C 0.062 3.938 27 F -0.124 7.124 28 C 0.005 3.995 29 H 0.059 0.941 30 H 0.201 0.799 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.110 0.890 39 H 0.148 0.852 40 H 0.170 0.830 41 H 0.183 0.817 42 H 0.188 0.812 43 H 0.181 0.819 44 H 0.090 0.910 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.959 -25.732 -4.514 27.310 hybrid contribution -0.097 1.796 0.204 1.810 sum -8.055 -23.937 -4.310 25.621 Atomic orbital electron populations 1.69877 1.06948 1.26111 1.59390 1.25688 0.96345 1.01528 1.03617 0.85142 0.77099 0.78717 0.78379 1.20097 1.22313 1.20023 1.19655 0.91590 0.85352 1.41436 0.90236 1.42685 1.05499 1.01538 1.89441 1.20858 0.93669 0.84350 0.98066 1.21619 0.96955 0.96371 0.96463 0.93439 1.21514 0.97868 0.91773 1.03302 1.21924 0.98068 0.99515 0.97167 1.22212 0.98953 0.82420 0.98792 1.48270 1.06540 1.08905 1.70367 1.21227 0.82676 0.91240 0.75715 1.90777 1.73778 1.30923 1.51249 1.20738 0.88560 0.95642 1.08120 1.19368 0.95765 1.00963 0.92479 1.21085 0.94220 1.01228 0.96945 1.17784 0.93099 1.03108 0.80329 1.91508 1.86972 1.94047 1.39268 1.21269 1.02154 0.99792 0.90756 1.21239 0.93623 1.00886 0.98955 1.17922 0.93507 1.02379 0.80031 1.91486 1.87360 1.93885 1.39644 1.21429 0.92775 0.87782 0.97508 0.94139 0.79891 0.95665 0.95501 0.90906 0.90233 0.92478 0.86888 0.86498 0.88958 0.85183 0.83026 0.81692 0.81214 0.81861 0.91032 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.09 13.06 21.65 0.28 -63.81 16 2 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 3 Si 0.98 48.29 29.55 68.60 2.03 50.31 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 6 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.75 -40.92 5.38 -343.45 -1.85 -42.77 16 10 C 0.16 6.48 5.65 86.38 0.49 6.96 16 11 C -0.09 -3.12 2.38 -10.57 -0.03 -3.15 16 12 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 13 C -0.11 -2.27 5.16 30.62 0.16 -2.11 16 14 C -0.13 -1.89 6.08 30.67 0.19 -1.71 16 15 C 0.10 1.37 6.34 86.37 0.55 1.91 16 16 N -0.61 -16.02 2.97 -818.08 -2.43 -18.45 16 17 C 0.50 14.95 7.68 87.66 0.67 15.62 16 18 O -0.59 -25.12 15.36 -3.04 -0.05 -25.16 16 19 C -0.09 -1.64 3.90 29.10 0.11 -1.53 16 20 C -0.08 -1.86 4.43 -19.83 -0.09 -1.95 16 21 C -0.12 -2.26 9.65 22.31 0.22 -2.05 16 22 C 0.08 1.53 7.30 22.37 0.16 1.70 16 23 F -0.14 -2.88 17.27 44.97 0.78 -2.10 16 24 C -0.12 -2.19 10.02 22.31 0.22 -1.96 16 25 C -0.13 -2.61 10.02 22.31 0.22 -2.38 16 26 C 0.08 2.02 7.12 22.37 0.16 2.18 16 27 F -0.15 -4.15 16.66 44.97 0.75 -3.40 16 28 C 0.13 4.47 5.55 86.51 0.48 4.95 16 29 H 0.25 15.98 8.31 -92.71 -0.77 15.21 16 30 H 0.37 22.25 6.92 -92.71 -0.64 21.61 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.12 0.84 5.93 -2.39 -0.01 0.83 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.13 1.77 7.49 -2.39 -0.02 1.76 16 40 H 0.15 1.36 7.80 -2.39 -0.02 1.34 16 41 H 0.17 2.34 8.04 -2.91 -0.02 2.32 16 42 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.05 2.16 6.23 -2.39 -0.01 2.15 16 Total: -1.00 -84.14 376.30 4.72 -79.42 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.38 Total: 27.66 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 4.83 Total: -1.71 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -3.99 Total: -125.03 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.05 Total: -25.16 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 1.53 Total: -5.50 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.31 kcal Total: -84.14 4.72 -79.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714081732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.444 kcal (2) G-P(sol) polarization free energy of solvation -84.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds