Wall clock time and date at job start Sat Apr 11 2020 05:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00373 * 2 1 4 4 H 1.48496 * 109.47358 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47095 * 300.00455 * 3 2 1 6 6 H 1.48505 * 109.46757 * 59.99931 * 3 2 1 7 7 C 1.38809 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00615 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00102 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00262 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47319 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47680 * 180.02562 * 11 10 9 13 13 C 1.53352 * 109.41474 * 295.12970 * 12 11 10 14 14 C 1.53189 * 109.14813 * 178.67495 * 13 12 11 15 15 N 1.46923 * 108.89399 * 54.57372 * 14 13 12 16 16 C 1.34779 * 120.62950 * 126.30060 * 15 14 13 17 17 O 1.21557 * 120.00048 * 354.38410 * 16 15 14 18 18 C 1.47854 * 120.00015 * 174.38096 * 16 15 14 19 19 C 1.39543 * 120.12181 * 324.36725 * 18 16 15 20 20 C 1.38209 * 119.87826 * 179.74774 * 19 18 16 21 21 F 1.35096 * 119.94220 * 180.27393 * 20 19 18 22 22 C 1.38531 * 120.11844 * 0.54302 * 20 19 18 23 23 C 1.38526 * 120.24600 * 359.71034 * 22 20 19 24 24 F 1.35099 * 119.94459 * 180.02562 * 23 22 20 25 25 C 1.38213 * 120.12157 * 0.02562 * 23 22 20 26 26 C 1.46922 * 118.74028 * 306.31712 * 15 14 13 27 27 C 1.53030 * 109.46301 * 174.99848 * 12 11 10 28 28 H 0.97001 * 119.99453 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99330 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47640 * 59.99706 * 10 9 7 31 31 H 1.08996 * 109.47150 * 299.99911 * 10 9 7 32 32 H 1.09006 * 109.47361 * 59.99634 * 11 10 9 33 33 H 1.09005 * 109.47003 * 299.99875 * 11 10 9 34 34 H 1.09000 * 109.45958 * 55.02368 * 12 11 10 35 35 H 1.08999 * 109.68617 * 58.70476 * 13 12 11 36 36 H 1.09006 * 109.47092 * 298.50953 * 13 12 11 37 37 H 1.08997 * 109.58356 * 294.71446 * 14 13 12 38 38 H 1.09005 * 109.58567 * 174.43822 * 14 13 12 39 39 H 1.07998 * 120.06327 * 0.02562 * 19 18 16 40 40 H 1.07997 * 119.87879 * 179.71961 * 22 20 19 41 41 H 1.07994 * 120.06035 * 180.02562 * 25 23 22 42 42 H 1.08999 * 109.58894 * 173.39727 * 26 15 14 43 43 H 1.08995 * 109.59273 * 293.68549 * 26 15 14 44 44 H 1.09002 * 109.50058 * 61.43394 * 27 12 11 45 45 H 1.09001 * 109.52667 * 301.35421 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 6 1.8287 -6.1448 0.0008 13 6 2.6154 -6.2799 -1.3086 14 6 3.4048 -7.5926 -1.2875 15 7 2.4777 -8.7009 -1.0214 16 6 2.4236 -9.7643 -1.8477 17 8 3.0701 -9.7676 -2.8771 18 6 1.5780 -10.9269 -1.5021 19 6 1.4402 -11.3214 -0.1707 20 6 0.6443 -12.4057 0.1472 21 9 0.5055 -12.7854 1.4362 22 6 -0.0070 -13.1073 -0.8542 23 6 0.1305 -12.7232 -2.1780 24 9 -0.5079 -13.4115 -3.1496 25 6 0.9195 -11.6371 -2.5068 26 6 1.6104 -8.6279 0.1623 27 6 0.8388 -7.3049 0.1272 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 2.6848 -3.7146 0.8894 31 1 2.6846 -3.7145 -0.8905 32 1 0.4367 -4.7622 -0.8896 33 1 0.4375 -4.7618 0.8904 34 1 2.5205 -6.1643 0.8428 35 1 3.3053 -5.4421 -1.4106 36 1 1.9224 -6.2856 -2.1500 37 1 4.1604 -7.5519 -0.5030 38 1 3.8880 -7.7440 -2.2527 39 1 1.9509 -10.7778 0.6103 40 1 -0.6244 -13.9567 -0.6018 41 1 1.0257 -11.3383 -3.5391 42 1 0.9078 -9.4611 0.1525 43 1 2.2195 -8.6741 1.0650 44 1 0.1624 -7.3009 -0.7276 45 1 0.2638 -7.1946 1.0466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714288899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:23:04 Heat of formation + Delta-G solvation = -88.285241 kcal Electronic energy + Delta-G solvation = -28500.736000 eV Core-core repulsion = 24154.336274 eV Total energy + Delta-G solvation = -4346.399726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.57601 -49.54343 -41.05401 -38.91743 -37.89854 -35.47850 -33.73649 -32.31076 -31.32131 -31.14360 -30.60043 -28.52751 -25.73655 -24.57501 -23.82545 -23.10050 -22.78548 -21.37318 -20.56319 -19.78846 -18.49444 -17.85199 -17.22839 -16.99906 -16.82737 -16.55549 -16.22900 -16.09146 -15.85561 -15.46779 -14.89257 -14.80697 -14.68195 -14.35027 -13.95319 -13.87678 -13.76807 -13.34637 -13.22613 -12.98077 -12.80640 -12.58810 -12.50242 -12.41700 -12.09877 -11.45166 -11.31343 -11.19143 -11.04121 -10.79615 -10.63675 -10.45680 -10.30547 -10.17145 -9.95470 -9.70638 -9.66887 -9.34218 -8.95975 -8.86083 -6.91141 -5.76675 -3.05110 0.00632 0.31006 2.12904 2.46217 2.87788 3.22678 3.43013 3.48489 3.50874 3.72129 3.79895 4.10085 4.25706 4.32565 4.50717 4.56292 4.67589 4.71890 4.84014 4.92226 5.06195 5.11925 5.17223 5.24778 5.26738 5.34012 5.41273 5.51210 5.54261 5.61596 5.64741 5.75589 5.81508 5.92129 6.03771 6.05151 6.11393 6.25239 6.34733 6.40467 6.42738 6.85821 6.90448 6.97577 7.69259 7.70189 8.42709 9.53520 10.12683 10.46647 11.46465 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022462 B = 0.001929 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.266329 B =14512.571741 C =14789.922917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.121 4.121 12 C -0.083 4.083 13 C -0.131 4.131 14 C 0.111 3.889 15 N -0.598 5.598 16 C 0.560 3.440 17 O -0.527 6.527 18 C -0.068 4.068 19 C -0.139 4.139 20 C 0.127 3.873 21 F -0.125 7.125 22 C -0.172 4.172 23 C 0.129 3.871 24 F -0.125 7.125 25 C -0.110 4.110 26 C 0.089 3.911 27 C -0.130 4.130 28 H 0.254 0.746 29 H 0.383 0.617 30 H 0.016 0.984 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 -29.859 0.268 29.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.025 3.975 11 C -0.159 4.159 12 C -0.102 4.102 13 C -0.169 4.169 14 C -0.011 4.011 15 N -0.331 5.331 16 C 0.347 3.653 17 O -0.404 6.404 18 C -0.071 4.071 19 C -0.158 4.158 20 C 0.108 3.892 21 F -0.103 7.103 22 C -0.192 4.192 23 C 0.109 3.891 24 F -0.103 7.103 25 C -0.130 4.130 26 C -0.033 4.033 27 C -0.168 4.168 28 H 0.064 0.936 29 H 0.216 0.784 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.174 0.826 40 H 0.172 0.828 41 H 0.172 0.828 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.530 -29.759 -0.266 29.799 hybrid contribution -0.149 0.776 0.187 0.812 sum 1.381 -28.982 -0.080 29.015 Atomic orbital electron populations 1.69672 1.05122 1.25506 1.58007 1.24756 0.95551 0.97745 1.03161 0.86114 0.78778 0.84110 0.77194 1.20552 1.21855 1.21873 1.19285 0.91051 0.84233 1.42339 0.91165 1.42398 1.05897 1.00162 1.89451 1.20696 0.93609 0.85589 0.97610 1.21757 0.98699 0.93313 1.02091 1.21153 0.96886 0.94468 0.97708 1.22113 0.99973 0.96529 0.98330 1.21771 0.91247 0.85035 1.03028 1.48032 1.39681 1.19383 1.25994 1.18028 0.81685 0.82210 0.83329 1.90824 1.44759 1.80657 1.24205 1.19528 0.98382 0.96703 0.92498 1.21597 1.00170 0.97040 0.97042 1.17063 0.98466 0.94900 0.78801 1.91578 1.94280 1.90482 1.34001 1.21236 1.03707 1.03136 0.91071 1.17082 0.94888 0.92185 0.84906 1.91575 1.79499 1.77956 1.61309 1.21259 0.96224 0.94054 1.01455 1.22353 0.93668 0.99800 0.87459 1.22003 0.98237 0.93429 1.03179 0.93583 0.78372 0.96647 0.96249 0.92009 0.91894 0.90881 0.89477 0.91363 0.90964 0.88800 0.82619 0.82816 0.82822 0.88882 0.90580 0.91262 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.74 -18.73 5.60 -59.91 -0.34 -19.07 16 10 C 0.15 2.97 6.02 -4.05 -0.02 2.94 16 11 C -0.12 -1.81 4.80 -26.73 -0.13 -1.94 16 12 C -0.08 -0.92 2.15 -90.42 -0.19 -1.12 16 13 C -0.13 -1.46 5.16 -26.45 -0.14 -1.60 16 14 C 0.11 1.10 6.43 -3.71 -0.02 1.07 16 15 N -0.60 -5.64 2.97 -173.88 -0.52 -6.16 16 16 C 0.56 6.02 7.38 -12.32 -0.09 5.93 16 17 O -0.53 -7.45 16.25 5.32 0.09 -7.37 16 18 C -0.07 -0.57 5.29 -104.99 -0.55 -1.12 16 19 C -0.14 -0.92 7.33 -39.11 -0.29 -1.21 16 20 C 0.13 0.84 7.29 -39.48 -0.29 0.55 16 21 F -0.13 -0.89 17.26 2.25 0.04 -0.85 16 22 C -0.17 -1.07 10.00 -39.37 -0.39 -1.46 16 23 C 0.13 0.95 7.29 -39.48 -0.29 0.66 16 24 F -0.13 -1.00 17.26 2.25 0.04 -0.96 16 25 C -0.11 -0.89 9.59 -39.10 -0.37 -1.27 16 26 C 0.09 0.65 4.78 -3.71 -0.02 0.63 16 27 C -0.13 -1.16 5.36 -26.61 -0.14 -1.30 16 28 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.02 0.38 6.54 -51.93 -0.34 0.04 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.03 6.52 -51.93 -0.34 0.70 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.04 7.00 -51.93 -0.36 0.67 16 39 H 0.16 0.81 6.06 -52.49 -0.32 0.49 16 40 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.15 1.24 8.00 -52.49 -0.42 0.82 16 42 H 0.09 0.57 4.46 -51.93 -0.23 0.34 16 43 H 0.08 0.45 8.05 -51.93 -0.42 0.03 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 371.27 15.07 5.60 5.60 Total: -1.00 -32.76 371.27 -8.68 -41.44 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.09 Total: 4.31 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -3.19 Total: -6.67 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.13 Total: -52.97 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.09 Total: -7.37 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.08 Total: -1.81 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.76 -8.68 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714288899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.846 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds