Wall clock time and date at job start Sat Apr 11 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00373 * 2 1 4 4 H 1.48496 * 109.47358 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47095 * 300.00455 * 3 2 1 6 6 H 1.48505 * 109.46757 * 59.99931 * 3 2 1 7 7 C 1.38809 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00615 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00102 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00262 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47319 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47680 * 180.02562 * 11 10 9 13 13 C 1.53352 * 109.41474 * 295.12970 * 12 11 10 14 14 C 1.53189 * 109.14813 * 178.67495 * 13 12 11 15 15 N 1.46923 * 108.89399 * 54.57372 * 14 13 12 16 16 C 1.34779 * 120.62950 * 126.30060 * 15 14 13 17 17 O 1.21557 * 120.00048 * 354.38410 * 16 15 14 18 18 C 1.47854 * 120.00015 * 174.38096 * 16 15 14 19 19 C 1.39543 * 120.12181 * 324.36725 * 18 16 15 20 20 C 1.38209 * 119.87826 * 179.74774 * 19 18 16 21 21 F 1.35096 * 119.94220 * 180.27393 * 20 19 18 22 22 C 1.38531 * 120.11844 * 0.54302 * 20 19 18 23 23 C 1.38526 * 120.24600 * 359.71034 * 22 20 19 24 24 F 1.35099 * 119.94459 * 180.02562 * 23 22 20 25 25 C 1.38213 * 120.12157 * 0.02562 * 23 22 20 26 26 C 1.46922 * 118.74028 * 306.31712 * 15 14 13 27 27 C 1.53030 * 109.46301 * 174.99848 * 12 11 10 28 28 H 0.97001 * 119.99453 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99330 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47640 * 59.99706 * 10 9 7 31 31 H 1.08996 * 109.47150 * 299.99911 * 10 9 7 32 32 H 1.09006 * 109.47361 * 59.99634 * 11 10 9 33 33 H 1.09005 * 109.47003 * 299.99875 * 11 10 9 34 34 H 1.09000 * 109.45958 * 55.02368 * 12 11 10 35 35 H 1.08999 * 109.68617 * 58.70476 * 13 12 11 36 36 H 1.09006 * 109.47092 * 298.50953 * 13 12 11 37 37 H 1.08997 * 109.58356 * 294.71446 * 14 13 12 38 38 H 1.09005 * 109.58567 * 174.43822 * 14 13 12 39 39 H 1.07998 * 120.06327 * 0.02562 * 19 18 16 40 40 H 1.07997 * 119.87879 * 179.71961 * 22 20 19 41 41 H 1.07994 * 120.06035 * 180.02562 * 25 23 22 42 42 H 1.08999 * 109.58894 * 173.39727 * 26 15 14 43 43 H 1.08995 * 109.59273 * 293.68549 * 26 15 14 44 44 H 1.09002 * 109.50058 * 61.43394 * 27 12 11 45 45 H 1.09001 * 109.52667 * 301.35421 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 6 1.8287 -6.1448 0.0008 13 6 2.6154 -6.2799 -1.3086 14 6 3.4048 -7.5926 -1.2875 15 7 2.4777 -8.7009 -1.0214 16 6 2.4236 -9.7643 -1.8477 17 8 3.0701 -9.7676 -2.8771 18 6 1.5780 -10.9269 -1.5021 19 6 1.4402 -11.3214 -0.1707 20 6 0.6443 -12.4057 0.1472 21 9 0.5055 -12.7854 1.4362 22 6 -0.0070 -13.1073 -0.8542 23 6 0.1305 -12.7232 -2.1780 24 9 -0.5079 -13.4115 -3.1496 25 6 0.9195 -11.6371 -2.5068 26 6 1.6104 -8.6279 0.1623 27 6 0.8388 -7.3049 0.1272 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 2.6848 -3.7146 0.8894 31 1 2.6846 -3.7145 -0.8905 32 1 0.4367 -4.7622 -0.8896 33 1 0.4375 -4.7618 0.8904 34 1 2.5205 -6.1643 0.8428 35 1 3.3053 -5.4421 -1.4106 36 1 1.9224 -6.2856 -2.1500 37 1 4.1604 -7.5519 -0.5030 38 1 3.8880 -7.7440 -2.2527 39 1 1.9509 -10.7778 0.6103 40 1 -0.6244 -13.9567 -0.6018 41 1 1.0257 -11.3383 -3.5391 42 1 0.9078 -9.4611 0.1525 43 1 2.2195 -8.6741 1.0650 44 1 0.1624 -7.3009 -0.7276 45 1 0.2638 -7.1946 1.0466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714288899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:23:03 Heat of formation + Delta-G solvation = -107.067331 kcal Electronic energy + Delta-G solvation = -28501.550452 eV Core-core repulsion = 24154.336274 eV Total energy + Delta-G solvation = -4347.214178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.13557 -50.09071 -41.79970 -39.62166 -38.78428 -36.94894 -35.17002 -33.25406 -32.74676 -31.83942 -31.33691 -29.92000 -26.91862 -25.61880 -24.83711 -24.04861 -23.68648 -22.59778 -21.57883 -20.58708 -19.23148 -19.07530 -18.45243 -17.74890 -17.48185 -17.12831 -16.94217 -16.77352 -16.66062 -16.41134 -16.24531 -15.80735 -15.49927 -15.40782 -15.33831 -15.05432 -14.79717 -14.45011 -14.36331 -13.95902 -13.83031 -13.42062 -13.13811 -13.04468 -13.03615 -12.88128 -12.79280 -12.51086 -12.26041 -12.19075 -12.07562 -11.96207 -11.62769 -11.41356 -11.27602 -11.05797 -10.88329 -10.27616 -9.90437 -9.74368 -8.99353 -7.96361 -5.25082 -0.57135 -0.23978 1.41017 1.46784 1.47700 1.57894 1.74786 2.24898 2.55415 2.66183 3.12995 3.20852 3.37503 3.58213 3.70762 3.72639 3.75900 3.83443 3.84638 4.09486 4.17029 4.28847 4.32372 4.39999 4.49838 4.55635 4.57980 4.65378 4.72440 4.77675 4.78739 4.80679 4.84471 4.90966 4.97025 5.06968 5.10511 5.19181 5.31018 5.39536 5.49295 5.50197 5.53788 5.57554 6.22036 6.27082 6.90402 7.32423 8.10377 8.32016 9.27661 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022462 B = 0.001929 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.266329 B =14512.571741 C =14789.922917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.751 5.751 10 C 0.149 3.851 11 C -0.108 4.108 12 C -0.074 4.074 13 C -0.127 4.127 14 C 0.115 3.885 15 N -0.596 5.596 16 C 0.558 3.442 17 O -0.571 6.571 18 C -0.079 4.079 19 C -0.126 4.126 20 C 0.128 3.872 21 F -0.125 7.125 22 C -0.159 4.159 23 C 0.123 3.877 24 F -0.131 7.131 25 C -0.117 4.117 26 C 0.090 3.910 27 C -0.127 4.127 28 H 0.251 0.749 29 H 0.372 0.628 30 H 0.021 0.979 31 H 0.021 0.979 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.145 0.855 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.057 0.943 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.616 -31.328 2.005 31.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.393 5.393 10 C 0.023 3.977 11 C -0.146 4.146 12 C -0.093 4.093 13 C -0.165 4.165 14 C -0.007 4.007 15 N -0.327 5.327 16 C 0.347 3.653 17 O -0.452 6.452 18 C -0.082 4.082 19 C -0.145 4.145 20 C 0.109 3.891 21 F -0.103 7.103 22 C -0.178 4.178 23 C 0.103 3.897 24 F -0.109 7.109 25 C -0.136 4.136 26 C -0.032 4.032 27 C -0.165 4.165 28 H 0.060 0.940 29 H 0.204 0.796 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.193 0.807 40 H 0.192 0.808 41 H 0.163 0.837 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.076 0.924 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.114 -31.258 1.495 31.365 hybrid contribution -0.325 1.178 -0.352 1.272 sum 1.789 -30.080 1.143 30.155 Atomic orbital electron populations 1.69826 1.06649 1.26022 1.59706 1.25612 0.96471 1.01258 1.03828 0.85056 0.78251 0.79661 0.76706 1.18953 1.22067 1.21880 1.19697 0.91530 0.85473 1.40910 0.90630 1.42675 1.05691 1.01572 1.89393 1.20908 0.94375 0.84823 0.97561 1.21635 0.97818 0.93734 1.01447 1.21089 0.97169 0.93092 0.97971 1.22028 0.99565 0.97038 0.97900 1.21686 0.91487 0.84437 1.03096 1.48120 1.39522 1.18727 1.26342 1.18364 0.81302 0.82915 0.82722 1.90799 1.46662 1.81640 1.26081 1.19302 0.99054 0.96450 0.93399 1.21694 0.99511 0.96831 0.96479 1.17023 0.98458 0.94867 0.78798 1.91588 1.94278 1.90465 1.33957 1.21431 1.02923 1.03171 0.90286 1.17070 0.95135 0.92146 0.85320 1.91562 1.79641 1.78043 1.61687 1.21259 0.96627 0.94505 1.01254 1.22561 0.93946 0.99255 0.87389 1.21966 0.97726 0.93222 1.03557 0.93995 0.79618 0.96138 0.96099 0.93283 0.91907 0.89450 0.90485 0.93058 0.88891 0.90357 0.80731 0.80761 0.83686 0.87294 0.87850 0.92410 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.03 13.06 21.65 0.28 -59.74 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.24 -13.79 9.99 84.03 0.84 -12.95 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.75 -38.55 5.60 -343.47 -1.92 -40.48 16 10 C 0.15 5.76 6.02 86.38 0.52 6.28 16 11 C -0.11 -3.18 4.80 30.59 0.15 -3.03 16 12 C -0.07 -1.51 2.15 -10.67 -0.02 -1.54 16 13 C -0.13 -2.76 5.16 30.78 0.16 -2.60 16 14 C 0.11 2.15 6.43 86.36 0.56 2.71 16 15 N -0.60 -10.26 2.97 -822.31 -2.44 -12.70 16 16 C 0.56 11.65 7.38 86.79 0.64 12.29 16 17 O -0.57 -16.55 16.25 -3.89 -0.06 -16.61 16 18 C -0.08 -1.22 5.29 -20.10 -0.11 -1.33 16 19 C -0.13 -1.33 7.33 22.58 0.17 -1.16 16 20 C 0.13 1.31 7.29 22.33 0.16 1.48 16 21 F -0.12 -1.37 17.26 44.97 0.78 -0.59 16 22 C -0.16 -1.58 10.00 22.41 0.22 -1.36 16 23 C 0.12 1.65 7.29 22.33 0.16 1.81 16 24 F -0.13 -2.00 17.26 44.97 0.78 -1.22 16 25 C -0.12 -1.84 9.59 22.58 0.22 -1.63 16 26 C 0.09 1.02 4.78 86.36 0.41 1.43 16 27 C -0.13 -1.94 5.36 30.67 0.16 -1.78 16 28 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.37 20.34 7.67 -92.71 -0.71 19.63 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.02 0.81 6.54 -2.39 -0.02 0.80 16 32 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 1.81 6.52 -2.39 -0.02 1.80 16 36 H 0.05 1.27 8.14 -2.38 -0.02 1.26 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.75 7.00 -2.38 -0.02 1.73 16 39 H 0.18 1.13 6.06 -2.91 -0.02 1.11 16 40 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.15 2.47 8.00 -2.91 -0.02 2.45 16 42 H 0.11 0.95 4.46 -2.39 -0.01 0.93 16 43 H 0.10 0.71 8.05 -2.39 -0.02 0.70 16 44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -71.46 371.27 4.46 -67.00 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.32 Total: 21.50 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 4.71 Total: -5.55 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -4.09 Total: -112.93 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.06 Total: -16.61 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 1.55 Total: -1.81 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -71.46 4.46 -67.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714288899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.067 kcal (2) G-P(sol) polarization free energy of solvation -71.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds