Wall clock time and date at job start Sat Apr 11 2020 05:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46793 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.46814 * 60.00066 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36938 * 119.99936 * 343.08512 * 7 2 1 10 10 C 1.46931 * 120.62972 * 151.83343 * 9 7 2 11 11 C 1.53189 * 108.89061 * 126.29441 * 10 9 7 12 12 C 1.53349 * 109.15350 * 54.57922 * 11 10 9 13 13 C 1.52989 * 109.42090 * 178.67324 * 12 11 10 14 14 C 1.53000 * 109.47021 * 295.12340 * 13 12 11 15 15 N 1.46510 * 109.47161 * 179.97438 * 14 13 12 16 16 C 1.34773 * 119.99824 * 179.97438 * 15 14 13 17 17 O 1.21566 * 120.00351 * 0.02562 * 16 15 14 18 18 C 1.47732 * 119.99614 * 179.97438 * 16 15 14 19 19 C 1.39658 * 120.10763 * 179.97438 * 18 16 15 20 20 C 1.37838 * 119.92540 * 180.02562 * 19 18 16 21 21 C 1.38611 * 120.14835 * 0.02799 * 20 19 18 22 22 F 1.35102 * 119.88824 * 179.97438 * 21 20 19 23 23 C 1.38829 * 120.22042 * 359.97254 * 21 20 19 24 24 F 1.35097 * 119.96639 * 179.97438 * 23 21 20 25 25 C 1.38062 * 120.07206 * 359.72911 * 23 21 20 26 26 C 1.53047 * 109.60312 * 298.71070 * 12 11 10 27 27 C 1.46927 * 120.63023 * 331.80303 * 9 7 2 28 28 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58339 * 246.15009 * 10 9 7 30 30 H 1.09003 * 109.58852 * 6.43598 * 10 9 7 31 31 H 1.09001 * 109.49505 * 174.65848 * 11 10 9 32 32 H 1.08994 * 109.50061 * 294.75020 * 11 10 9 33 33 H 1.08997 * 109.42274 * 58.74421 * 12 11 10 34 34 H 1.09000 * 109.47734 * 55.12337 * 13 12 11 35 35 H 1.09008 * 109.47484 * 175.12574 * 13 12 11 36 36 H 1.08995 * 109.47125 * 299.99647 * 14 13 12 37 37 H 1.08999 * 109.47135 * 60.00564 * 14 13 12 38 38 H 0.96999 * 119.99621 * 0.02562 * 15 14 13 39 39 H 1.08004 * 120.03522 * 0.03096 * 19 18 16 40 40 H 1.08007 * 119.92863 * 180.02562 * 20 19 18 41 41 H 1.08004 * 120.07682 * 180.28024 * 25 23 21 42 42 H 1.09000 * 109.49464 * 301.42009 * 26 12 11 43 43 H 1.08999 * 109.52117 * 181.33762 * 26 12 11 44 44 H 1.09002 * 109.58255 * 353.42549 * 27 9 7 45 45 H 1.09000 * 109.58150 * 113.70283 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8140 -3.6530 -0.1978 11 6 2.0709 -4.6185 0.9634 12 6 0.8133 -4.7005 1.8372 13 6 1.0518 -5.6888 2.9804 14 6 1.2431 -7.0946 2.4077 15 7 1.4721 -8.0409 3.5025 16 6 1.6672 -9.3472 3.2343 17 8 1.6536 -9.7402 2.0840 18 6 1.8986 -10.3013 4.3382 19 6 2.1005 -11.6555 4.0630 20 6 2.3156 -12.5425 5.0959 21 6 2.3314 -12.0935 6.4072 22 9 2.5422 -12.9676 7.4155 23 6 2.1315 -10.7487 6.6877 24 9 2.1474 -10.3168 7.9677 25 6 1.9213 -9.8513 5.6598 26 6 0.4986 -3.3187 2.4150 27 6 0.2264 -2.3400 1.2683 28 1 -0.4849 0.8400 0.0004 29 1 1.0401 -4.0610 -0.8480 30 1 2.7331 -3.5130 -0.7669 31 1 2.3090 -5.6064 0.5691 32 1 2.9059 -4.2542 1.5616 33 1 -0.0269 -5.0410 1.2321 34 1 1.9450 -5.3969 3.5328 35 1 0.1922 -5.6834 3.6507 36 1 0.3499 -7.3866 1.8555 37 1 2.1027 -7.1001 1.7376 38 1 1.4826 -7.7273 4.4204 39 1 2.0882 -12.0073 3.0419 40 1 2.4722 -13.5898 4.8830 41 1 1.7702 -8.8043 5.8777 42 1 1.3485 -2.9667 2.9997 43 1 -0.3815 -3.3832 3.0548 44 1 0.0994 -1.3342 1.6687 45 1 -0.6773 -2.6386 0.7370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714327364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:23:10 Heat of formation + Delta-G solvation = -91.953405 kcal Electronic energy + Delta-G solvation = -28001.575582 eV Core-core repulsion = 23655.016793 eV Total energy + Delta-G solvation = -4346.558789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.03879 -49.10797 -40.61500 -38.67020 -37.92976 -35.58735 -33.72993 -32.01638 -31.22073 -30.98293 -29.94867 -28.52520 -25.53079 -24.41029 -23.71803 -22.93908 -21.98344 -21.14345 -20.66240 -19.12335 -18.91150 -17.96810 -17.75030 -16.89316 -16.82620 -16.76929 -15.89012 -15.73448 -15.50029 -15.08875 -14.90385 -14.83866 -14.38719 -14.32682 -13.88550 -13.60082 -13.50061 -13.38810 -13.04727 -12.86574 -12.72865 -12.46700 -12.24144 -12.04735 -11.61492 -11.36771 -11.24847 -10.91382 -10.71750 -10.52115 -10.37193 -10.17262 -10.13647 -9.86440 -9.82209 -9.50729 -9.44128 -9.37516 -9.20358 -8.45965 -6.64383 -5.77691 -3.19854 -0.08206 0.33521 2.16272 2.74304 3.08509 3.09831 3.36889 3.44909 3.47172 3.67590 3.85444 4.07558 4.30208 4.46494 4.50496 4.82396 4.96020 4.99380 5.03400 5.15834 5.24240 5.36961 5.37623 5.44407 5.50547 5.56705 5.71962 5.75247 5.95805 5.98822 6.01507 6.06833 6.18280 6.25211 6.37160 6.54663 6.63685 6.70721 6.82647 6.86420 7.02517 7.12563 7.39349 7.67749 7.80920 7.81455 8.47017 9.23322 9.87076 10.44093 11.30758 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027467 B = 0.001754 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.159575 B =15955.571741 C =16482.224260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.144 3.856 11 C -0.130 4.130 12 C -0.074 4.074 13 C -0.127 4.127 14 C 0.116 3.884 15 N -0.721 5.721 16 C 0.557 3.443 17 O -0.528 6.528 18 C -0.113 4.113 19 C -0.040 4.040 20 C -0.131 4.131 21 C 0.091 3.909 22 F -0.123 7.123 23 C 0.063 3.937 24 F -0.124 7.124 25 C -0.095 4.095 26 C -0.134 4.134 27 C 0.170 3.830 28 H 0.253 0.747 29 H 0.016 0.984 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.399 0.601 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.086 0.914 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -24.268 13.637 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.018 3.982 11 C -0.169 4.169 12 C -0.094 4.094 13 C -0.165 4.165 14 C -0.007 4.007 15 N -0.372 5.372 16 C 0.343 3.657 17 O -0.405 6.405 18 C -0.116 4.116 19 C -0.059 4.059 20 C -0.150 4.150 21 C 0.070 3.930 22 F -0.102 7.102 23 C 0.043 3.957 24 F -0.102 7.102 25 C -0.114 4.114 26 C -0.173 4.173 27 C 0.044 3.956 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.234 0.766 39 H 0.174 0.826 40 H 0.173 0.827 41 H 0.169 0.831 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.689 -24.376 12.858 27.691 hybrid contribution 0.412 0.984 1.027 1.481 sum 3.101 -23.392 13.885 27.379 Atomic orbital electron populations 1.70043 1.05246 1.25306 1.54217 1.25050 0.95292 0.98396 1.01084 0.86242 0.79374 0.84040 0.77251 1.20283 1.21755 1.21606 1.19235 0.92532 0.84870 1.41301 0.91733 1.44062 1.35915 1.01523 1.50075 1.20897 0.97495 0.86983 0.92862 1.22180 0.97037 0.98917 0.98798 1.21024 0.98522 0.94809 0.95006 1.21930 1.02083 0.92986 0.99452 1.21642 1.02412 0.87750 0.88868 1.46041 1.72502 1.07434 1.11265 1.17969 0.77338 0.82240 0.88170 1.90826 1.50461 1.78166 1.21060 1.19947 1.04198 0.94973 0.92502 1.21264 0.93209 0.90867 1.00596 1.21127 1.02242 1.02159 0.89492 1.17968 1.03107 0.85854 0.86068 1.91567 1.91949 1.67860 1.58783 1.17469 1.06859 0.91264 0.80103 1.91574 1.94094 1.89895 1.34656 1.21257 0.99002 1.00348 0.90818 1.22215 0.99914 0.95335 0.99857 1.20764 0.88634 0.98159 0.88032 0.93743 0.96576 0.92999 0.93022 0.92419 0.91620 0.91469 0.91671 0.91067 0.90541 0.76575 0.82604 0.82718 0.83141 0.92745 0.93430 0.89601 0.96519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 11.20 55.49 0.62 -25.57 16 2 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 3 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 8 H 0.06 1.75 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.72 2.99 -172.32 -0.52 -15.24 16 10 C 0.14 2.99 6.50 -3.71 -0.02 2.96 16 11 C -0.13 -2.14 5.16 -26.45 -0.14 -2.27 16 12 C -0.07 -1.12 2.15 -90.42 -0.19 -1.32 16 13 C -0.13 -1.41 4.80 -26.74 -0.13 -1.54 16 14 C 0.12 1.25 5.43 -4.04 -0.02 1.23 16 15 N -0.72 -6.44 5.51 -61.28 -0.34 -6.78 16 16 C 0.56 5.73 7.77 -12.38 -0.10 5.64 16 17 O -0.53 -7.34 16.34 5.31 0.09 -7.26 16 18 C -0.11 -0.87 5.87 -104.97 -0.62 -1.49 16 19 C -0.04 -0.27 9.59 -39.20 -0.38 -0.64 16 20 C -0.13 -0.74 10.01 -39.59 -0.40 -1.13 16 21 C 0.09 0.66 7.31 -39.23 -0.29 0.37 16 22 F -0.12 -1.03 17.18 2.25 0.04 -0.99 16 23 C 0.06 0.48 7.30 -39.43 -0.29 0.19 16 24 F -0.12 -1.08 17.18 2.25 0.04 -1.05 16 25 C -0.09 -0.61 9.51 -39.13 -0.37 -0.99 16 26 C -0.13 -2.39 5.36 -26.61 -0.14 -2.54 16 27 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 1.07 7.93 -51.93 -0.41 0.65 16 31 H 0.05 0.74 6.52 -51.93 -0.34 0.40 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.92 6.53 -51.93 -0.34 0.58 16 38 H 0.40 2.47 6.50 -40.82 -0.27 2.20 16 39 H 0.16 0.96 7.65 -52.48 -0.40 0.56 16 40 H 0.16 0.49 8.06 -52.48 -0.42 0.07 16 41 H 0.15 0.65 6.40 -52.48 -0.34 0.31 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -31.90 373.00 -8.99 -40.89 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.18 Total: -1.61 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -3.33 Total: -4.64 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.23 Total: -47.58 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.09 Total: -7.26 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.08 Total: -2.03 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.90 -8.99 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714327364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.062 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds