Wall clock time and date at job start Sat Apr 11 2020 05:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00205 * 2 1 4 4 H 1.48497 * 109.47322 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47199 * 300.00421 * 3 2 1 6 6 H 1.48503 * 109.46939 * 60.00159 * 3 2 1 7 7 C 1.38813 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00414 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00443 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47198 * 324.99338 * 10 9 7 12 12 C 1.52998 * 109.47135 * 204.99765 * 10 9 7 13 13 N 1.46497 * 109.47307 * 54.99697 * 12 10 9 14 14 C 1.34778 * 119.99816 * 180.02562 * 13 12 10 15 15 O 1.21278 * 119.99941 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99910 * 179.97438 * 14 13 12 17 17 H 1.09006 * 110.43233 * 57.46119 * 16 14 13 18 18 C 1.54265 * 110.59970 * 294.84532 * 16 14 13 19 19 C 1.53877 * 106.59605 * 217.65480 * 18 16 14 20 20 C 1.54463 * 106.68421 * 0.15594 * 19 18 16 21 21 F 1.39908 * 110.40710 * 264.75686 * 20 19 18 22 22 F 1.39910 * 110.66161 * 142.05395 * 20 19 18 23 23 C 1.54887 * 110.48595 * 179.97438 * 16 14 13 24 24 C 1.50702 * 109.47354 * 84.99209 * 10 9 7 25 25 C 1.38234 * 120.00023 * 39.73226 * 24 10 9 26 26 C 1.38237 * 120.00019 * 179.74421 * 25 24 10 27 27 C 1.38233 * 120.00015 * 0.52590 * 26 25 24 28 28 C 1.38237 * 119.99922 * 359.74576 * 27 26 25 29 29 C 1.38233 * 120.00165 * 220.00237 * 24 10 9 30 30 H 0.96998 * 120.00370 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99679 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46959 * 294.99251 * 12 10 9 33 33 H 1.09009 * 109.47020 * 175.00031 * 12 10 9 34 34 H 0.96997 * 119.99783 * 359.97438 * 13 12 10 35 35 H 1.08995 * 110.03137 * 336.93404 * 18 16 14 36 36 H 1.08998 * 110.03049 * 98.32093 * 18 16 14 37 37 H 1.08999 * 110.03493 * 119.28247 * 19 18 16 38 38 H 1.08997 * 110.03317 * 240.71381 * 19 18 16 39 39 H 1.09002 * 110.75856 * 275.07193 * 23 16 14 40 40 H 1.09006 * 110.75640 * 38.26179 * 23 16 14 41 41 H 1.08004 * 119.99464 * 359.97438 * 25 24 10 42 42 H 1.08000 * 119.99670 * 180.29029 * 26 25 24 43 43 H 1.07994 * 119.99869 * 179.77066 * 27 26 25 44 44 H 1.07992 * 120.00074 * 179.97438 * 28 27 26 45 45 H 1.08006 * 120.00050 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0016 11 1 2.9691 -3.5504 -0.5904 12 6 1.1812 -4.7519 -0.6123 13 7 0.7355 -4.3346 -1.9440 14 6 -0.0538 -5.1461 -2.6754 15 8 -0.3948 -6.2219 -2.2312 16 6 -0.5128 -4.7167 -4.0451 17 1 0.3441 -4.5008 -4.6833 18 6 -1.4365 -3.4851 -3.9466 19 6 -2.5326 -3.6715 -5.0104 20 6 -2.2405 -5.0133 -5.7176 21 9 -1.5012 -4.7982 -6.8858 22 9 -3.4314 -5.6879 -6.0077 23 6 -1.4035 -5.8100 -4.6858 24 6 2.4154 -4.0305 1.4139 25 6 1.5082 -3.8181 2.4350 26 6 1.8341 -4.1658 3.7326 27 6 3.0714 -4.7159 4.0108 28 6 3.9808 -4.9231 2.9905 29 6 3.6527 -4.5806 1.6921 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 -0.0016 32 1 0.3132 -4.9201 0.0252 33 1 1.7562 -5.6743 -0.6940 34 1 1.0079 -3.4740 -2.2991 35 1 -1.8843 -3.4326 -2.9543 36 1 -0.8697 -2.5762 -4.1488 37 1 -3.5124 -3.7096 -4.5343 38 1 -2.4980 -2.8533 -5.7296 39 1 -0.7926 -6.5637 -5.1827 40 1 -2.0490 -6.2699 -3.9375 41 1 0.5433 -3.3839 2.2183 42 1 1.1234 -4.0042 4.5296 43 1 3.3274 -4.9840 5.0251 44 1 4.9476 -5.3524 3.2079 45 1 4.3631 -4.7429 0.8949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714848229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:23:27 Heat of formation + Delta-G solvation = -114.802314 kcal Electronic energy + Delta-G solvation = -29253.044924 eV Core-core repulsion = 24905.495332 eV Total energy + Delta-G solvation = -4347.549592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.96614 -47.10413 -39.92401 -38.89290 -36.78970 -35.85205 -33.66718 -32.07468 -30.45337 -29.65585 -29.56765 -28.64811 -27.03430 -23.95079 -23.04320 -22.09311 -21.79460 -21.16616 -20.12235 -19.67532 -17.99790 -17.42321 -17.16895 -16.61243 -16.32199 -15.88990 -15.64018 -15.31044 -14.90484 -14.68130 -14.40766 -14.21884 -14.15295 -13.91538 -13.47853 -13.43709 -13.19948 -13.10113 -12.90993 -12.84015 -12.37660 -12.32611 -12.19448 -11.98212 -11.77154 -11.48166 -11.18033 -11.01914 -10.90289 -10.89110 -10.80280 -10.72966 -10.50682 -10.16627 -9.87595 -9.65428 -9.14656 -8.76321 -8.44744 -8.23303 -7.19888 -5.93573 -3.24773 1.82061 1.88815 2.77542 3.27918 3.33326 3.40949 3.41767 3.61848 3.84720 3.97313 4.25877 4.32904 4.45069 4.83990 4.90896 4.99641 5.08916 5.13544 5.19334 5.27365 5.31306 5.37703 5.41912 5.50185 5.52226 5.56678 5.68159 5.72664 5.80971 5.85670 5.95430 5.99557 6.00725 6.05194 6.21201 6.36337 6.44427 6.58480 6.72187 6.89647 6.97988 7.23679 7.48809 7.58493 7.79840 8.22625 8.42797 9.36183 9.85332 10.22196 11.27800 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009906 B = 0.003358 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.768882 B = 8337.299614 C =10471.805509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.004 4.004 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.198 3.802 11 H 0.066 0.934 12 C 0.120 3.880 13 N -0.709 5.709 14 C 0.521 3.479 15 O -0.550 6.550 16 C -0.113 4.113 17 H 0.109 0.891 18 C -0.112 4.112 19 C -0.158 4.158 20 C 0.276 3.724 21 F -0.196 7.196 22 F -0.198 7.198 23 C -0.136 4.136 24 C -0.082 4.082 25 C -0.083 4.083 26 C -0.128 4.128 27 C -0.134 4.134 28 C -0.130 4.130 29 C -0.120 4.120 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.412 0.588 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 -9.600 -5.319 10.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.354 5.354 10 C 0.087 3.913 11 H 0.083 0.917 12 C -0.004 4.004 13 N -0.360 5.360 14 C 0.306 3.694 15 O -0.429 6.429 16 C -0.135 4.135 17 H 0.127 0.873 18 C -0.150 4.150 19 C -0.196 4.196 20 C 0.240 3.760 21 F -0.177 7.177 22 F -0.178 7.178 23 C -0.175 4.175 24 C -0.086 4.086 25 C -0.101 4.101 26 C -0.146 4.146 27 C -0.152 4.152 28 C -0.148 4.148 29 C -0.139 4.139 30 H 0.066 0.934 31 H 0.221 0.779 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.131 0.869 41 H 0.141 0.859 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.219 -10.192 -5.054 11.379 hybrid contribution 0.325 1.495 -0.079 1.532 sum 0.107 -8.698 -5.133 10.100 Atomic orbital electron populations 1.69651 1.05042 1.25781 1.57057 1.24700 0.95441 0.97603 1.02360 0.86170 0.78936 0.84144 0.77221 1.20538 1.21816 1.21860 1.19228 0.91055 0.83680 1.43439 0.91055 1.42455 1.05770 0.99234 1.87976 1.19484 0.95044 0.86503 0.90291 0.91662 1.21597 0.98675 0.97188 0.82963 1.45947 1.50452 1.21867 1.17741 1.20165 0.78340 0.84420 0.86427 1.90682 1.57017 1.22733 1.72463 1.22067 0.99801 0.96331 0.95265 0.87287 1.22083 0.95579 0.97413 0.99904 1.23147 1.01965 0.95123 0.99352 1.22009 0.78132 0.93807 0.82094 1.93008 1.77118 1.95549 1.52008 1.93001 1.48243 1.82054 1.94551 1.23274 0.98980 0.97586 0.97640 1.20967 0.93615 0.95826 0.98163 1.21002 1.00073 0.97057 0.92018 1.21111 0.96767 0.99903 0.96822 1.20986 0.94509 1.01178 0.98540 1.20987 0.99049 1.01500 0.93280 1.21012 0.96633 0.99879 0.96381 0.93422 0.77872 0.91546 0.91493 0.75129 0.89497 0.89123 0.88346 0.88763 0.88783 0.86936 0.85915 0.86853 0.87078 0.86986 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.26 13.06 55.49 0.72 -24.53 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 3 Si 0.90 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -5.96 9.92 -15.06 -0.15 -6.11 16 8 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 9 N -0.71 -15.10 3.79 -54.55 -0.21 -15.31 16 10 C 0.20 3.42 2.65 -69.08 -0.18 3.24 16 11 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 12 C 0.12 1.89 5.21 -4.04 -0.02 1.87 16 13 N -0.71 -10.36 5.38 -60.29 -0.32 -10.69 16 14 C 0.52 7.55 7.00 -10.98 -0.08 7.47 16 15 O -0.55 -9.68 15.72 5.56 0.09 -9.59 16 16 C -0.11 -1.29 3.25 -90.11 -0.29 -1.58 16 17 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 18 C -0.11 -1.22 6.36 -25.61 -0.16 -1.38 16 19 C -0.16 -1.57 6.42 -25.51 -0.16 -1.73 16 20 C 0.28 3.10 2.51 -24.95 -0.06 3.03 16 21 F -0.20 -2.38 17.17 2.25 0.04 -2.34 16 22 F -0.20 -2.46 17.17 2.25 0.04 -2.42 16 23 C -0.14 -1.54 5.52 -24.73 -0.14 -1.68 16 24 C -0.08 -1.41 4.92 -104.62 -0.52 -1.93 16 25 C -0.08 -1.48 9.33 -39.58 -0.37 -1.85 16 26 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 27 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 28 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 29 C -0.12 -1.86 9.67 -39.58 -0.38 -2.24 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.39 8.84 7.80 -40.82 -0.32 8.52 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 34 H 0.41 6.01 8.14 -40.82 -0.33 5.68 16 35 H 0.09 1.06 7.83 -51.93 -0.41 0.65 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 0.91 8.11 -51.93 -0.42 0.49 16 38 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.11 1.37 7.46 -51.93 -0.39 0.99 16 41 H 0.12 2.33 7.71 -52.48 -0.40 1.92 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 44 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.11 1.54 8.04 -52.48 -0.42 1.12 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -28.68 383.71 -9.14 -37.83 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -6.45 Total: 15.44 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.80 Total: -10.07 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.19 Total: -50.53 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.08 Total: -4.76 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.68 -9.14 -37.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714848229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.976 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds