Wall clock time and date at job start Sat Apr 11 2020 05:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00205 * 2 1 4 4 H 1.48497 * 109.47322 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47199 * 300.00421 * 3 2 1 6 6 H 1.48503 * 109.46939 * 60.00159 * 3 2 1 7 7 C 1.38813 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00414 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00443 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47198 * 324.99338 * 10 9 7 12 12 C 1.52998 * 109.47135 * 204.99765 * 10 9 7 13 13 N 1.46497 * 109.47307 * 54.99697 * 12 10 9 14 14 C 1.34778 * 119.99816 * 180.02562 * 13 12 10 15 15 O 1.21278 * 119.99941 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99910 * 179.97438 * 14 13 12 17 17 H 1.09006 * 110.43233 * 57.46119 * 16 14 13 18 18 C 1.54265 * 110.59970 * 294.84532 * 16 14 13 19 19 C 1.53877 * 106.59605 * 217.65480 * 18 16 14 20 20 C 1.54463 * 106.68421 * 0.15594 * 19 18 16 21 21 F 1.39908 * 110.40710 * 264.75686 * 20 19 18 22 22 F 1.39910 * 110.66161 * 142.05395 * 20 19 18 23 23 C 1.54887 * 110.48595 * 179.97438 * 16 14 13 24 24 C 1.50702 * 109.47354 * 84.99209 * 10 9 7 25 25 C 1.38234 * 120.00023 * 39.73226 * 24 10 9 26 26 C 1.38237 * 120.00019 * 179.74421 * 25 24 10 27 27 C 1.38233 * 120.00015 * 0.52590 * 26 25 24 28 28 C 1.38237 * 119.99922 * 359.74576 * 27 26 25 29 29 C 1.38233 * 120.00165 * 220.00237 * 24 10 9 30 30 H 0.96998 * 120.00370 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99679 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46959 * 294.99251 * 12 10 9 33 33 H 1.09009 * 109.47020 * 175.00031 * 12 10 9 34 34 H 0.96997 * 119.99783 * 359.97438 * 13 12 10 35 35 H 1.08995 * 110.03137 * 336.93404 * 18 16 14 36 36 H 1.08998 * 110.03049 * 98.32093 * 18 16 14 37 37 H 1.08999 * 110.03493 * 119.28247 * 19 18 16 38 38 H 1.08997 * 110.03317 * 240.71381 * 19 18 16 39 39 H 1.09002 * 110.75856 * 275.07193 * 23 16 14 40 40 H 1.09006 * 110.75640 * 38.26179 * 23 16 14 41 41 H 1.08004 * 119.99464 * 359.97438 * 25 24 10 42 42 H 1.08000 * 119.99670 * 180.29029 * 26 25 24 43 43 H 1.07994 * 119.99869 * 179.77066 * 27 26 25 44 44 H 1.07992 * 120.00074 * 179.97438 * 28 27 26 45 45 H 1.08006 * 120.00050 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0016 11 1 2.9691 -3.5504 -0.5904 12 6 1.1812 -4.7519 -0.6123 13 7 0.7355 -4.3346 -1.9440 14 6 -0.0538 -5.1461 -2.6754 15 8 -0.3948 -6.2219 -2.2312 16 6 -0.5128 -4.7167 -4.0451 17 1 0.3441 -4.5008 -4.6833 18 6 -1.4365 -3.4851 -3.9466 19 6 -2.5326 -3.6715 -5.0104 20 6 -2.2405 -5.0133 -5.7176 21 9 -1.5012 -4.7982 -6.8858 22 9 -3.4314 -5.6879 -6.0077 23 6 -1.4035 -5.8100 -4.6858 24 6 2.4154 -4.0305 1.4139 25 6 1.5082 -3.8181 2.4350 26 6 1.8341 -4.1658 3.7326 27 6 3.0714 -4.7159 4.0108 28 6 3.9808 -4.9231 2.9905 29 6 3.6527 -4.5806 1.6921 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 -0.0016 32 1 0.3132 -4.9201 0.0252 33 1 1.7562 -5.6743 -0.6940 34 1 1.0079 -3.4740 -2.2991 35 1 -1.8843 -3.4326 -2.9543 36 1 -0.8697 -2.5762 -4.1488 37 1 -3.5124 -3.7096 -4.5343 38 1 -2.4980 -2.8533 -5.7296 39 1 -0.7926 -6.5637 -5.1827 40 1 -2.0490 -6.2699 -3.9375 41 1 0.5433 -3.3839 2.2183 42 1 1.1234 -4.0042 4.5296 43 1 3.3274 -4.9840 5.0251 44 1 4.9476 -5.3524 3.2079 45 1 4.3631 -4.7429 0.8949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714848229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:23:27 Heat of formation + Delta-G solvation = -129.659171 kcal Electronic energy + Delta-G solvation = -29253.689166 eV Core-core repulsion = 24905.495332 eV Total energy + Delta-G solvation = -4348.193834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.90417 -48.04897 -41.11870 -40.13380 -37.85555 -37.20513 -35.20758 -33.64050 -31.68958 -31.16385 -30.56738 -29.70335 -28.28334 -25.65273 -24.38149 -23.28770 -22.92482 -22.06059 -21.43848 -20.82783 -19.33914 -18.87750 -18.16471 -17.74878 -17.45457 -17.07040 -16.81124 -16.68946 -16.10483 -15.92750 -15.74377 -15.48607 -15.27377 -15.13156 -14.89120 -14.50531 -14.38770 -14.28700 -14.16087 -14.05112 -13.73851 -13.42387 -13.26054 -13.11230 -12.90685 -12.80205 -12.67462 -12.44532 -12.34802 -12.13728 -11.97551 -11.81935 -11.80466 -11.67085 -11.60830 -11.03388 -10.82602 -10.04138 -9.66765 -9.51348 -9.00452 -7.90130 -5.18705 0.59811 0.65914 1.48812 1.52673 1.59103 1.59952 2.15649 2.58041 2.71141 2.90493 3.03581 3.05263 3.40528 3.45797 3.80139 3.88737 3.96152 4.07515 4.08739 4.17087 4.18391 4.23901 4.24905 4.34320 4.39393 4.39814 4.43620 4.66028 4.73482 4.81035 4.85414 4.87737 4.94388 5.05230 5.08332 5.09964 5.24164 5.31974 5.47404 5.58663 5.70660 5.74594 5.95151 6.26974 6.30685 6.58600 7.22740 7.39250 8.06148 8.33381 9.31861 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009906 B = 0.003358 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.768882 B = 8337.299614 C =10471.805509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.059 4.059 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.304 1.304 7 C -0.228 4.228 8 H 0.072 0.928 9 N -0.716 5.716 10 C 0.204 3.796 11 H 0.072 0.928 12 C 0.132 3.868 13 N -0.706 5.706 14 C 0.521 3.479 15 O -0.583 6.583 16 C -0.106 4.106 17 H 0.131 0.869 18 C -0.109 4.109 19 C -0.152 4.152 20 C 0.277 3.723 21 F -0.199 7.199 22 F -0.205 7.205 23 C -0.135 4.135 24 C -0.101 4.101 25 C -0.110 4.110 26 C -0.138 4.138 27 C -0.132 4.132 28 C -0.127 4.127 29 C -0.127 4.127 30 H 0.249 0.751 31 H 0.376 0.624 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.414 0.586 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.127 0.873 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 -10.185 -5.398 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.252 4.252 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.232 1.232 7 C -0.359 4.359 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.094 3.906 11 H 0.090 0.910 12 C 0.007 3.993 13 N -0.357 5.357 14 C 0.309 3.691 15 O -0.464 6.464 16 C -0.127 4.127 17 H 0.149 0.851 18 C -0.146 4.146 19 C -0.190 4.190 20 C 0.241 3.759 21 F -0.180 7.180 22 F -0.186 7.186 23 C -0.173 4.173 24 C -0.104 4.104 25 C -0.128 4.128 26 C -0.156 4.156 27 C -0.150 4.150 28 C -0.145 4.145 29 C -0.145 4.145 30 H 0.058 0.942 31 H 0.209 0.791 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.251 0.749 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.145 0.855 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.751 -10.803 -5.140 12.091 hybrid contribution -0.216 1.551 0.022 1.566 sum 1.534 -9.253 -5.118 10.684 Atomic orbital electron populations 1.69776 1.06156 1.25648 1.59422 1.25265 0.96024 1.00058 1.03827 0.85322 0.78399 0.81187 0.76290 1.19523 1.22076 1.23183 1.19460 0.91144 0.84679 1.40657 0.90959 1.42461 1.05274 0.99903 1.87949 1.19546 0.94899 0.85186 0.90926 0.91049 1.21412 0.97776 0.97007 0.83134 1.45926 1.50478 1.21926 1.17332 1.20661 0.77469 0.83731 0.87278 1.90667 1.58085 1.24164 1.73435 1.22067 1.00647 0.96492 0.93480 0.85082 1.22043 0.95794 0.97392 0.99420 1.23137 1.01838 0.94869 0.99176 1.22057 0.77760 0.94256 0.81847 1.93002 1.77188 1.95566 1.52256 1.92987 1.48678 1.82309 1.94597 1.23237 0.98901 0.97731 0.97428 1.20890 0.94685 0.97437 0.97403 1.20953 0.99513 0.98793 0.93551 1.21345 0.98058 0.99908 0.96273 1.21382 0.93561 0.99766 1.00270 1.21411 1.00305 1.00257 0.92525 1.21287 0.95992 0.99393 0.97872 0.94219 0.79102 0.93332 0.90445 0.74929 0.91153 0.88468 0.87696 0.87305 0.88003 0.88112 0.88526 0.85529 0.83954 0.83658 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.35 13.06 21.65 0.28 -53.07 16 2 C -0.06 -3.05 5.50 84.86 0.47 -2.58 16 3 Si 0.96 43.14 29.55 68.60 2.03 45.17 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.23 -11.13 9.92 84.03 0.83 -10.30 16 8 H 0.07 3.49 7.83 -2.91 -0.02 3.47 16 9 N -0.72 -30.73 3.79 -326.50 -1.24 -31.97 16 10 C 0.20 7.02 2.65 44.25 0.12 7.14 16 11 H 0.07 2.38 7.94 -2.38 -0.02 2.36 16 12 C 0.13 4.15 5.21 86.38 0.45 4.60 16 13 N -0.71 -20.61 5.38 -463.06 -2.49 -23.10 16 14 C 0.52 15.04 7.00 87.66 0.61 15.65 16 15 O -0.58 -20.65 15.72 -3.02 -0.05 -20.70 16 16 C -0.11 -2.31 3.25 -10.47 -0.03 -2.34 16 17 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16 18 C -0.11 -2.28 6.36 31.32 0.20 -2.08 16 19 C -0.15 -2.83 6.42 31.39 0.20 -2.63 16 20 C 0.28 5.89 2.51 31.75 0.08 5.97 16 21 F -0.20 -4.51 17.17 44.97 0.77 -3.73 16 22 F -0.20 -4.91 17.17 44.97 0.77 -4.14 16 23 C -0.13 -2.93 5.52 31.89 0.18 -2.76 16 24 C -0.10 -3.43 4.92 -19.87 -0.10 -3.53 16 25 C -0.11 -3.95 9.33 22.27 0.21 -3.74 16 26 C -0.14 -4.21 10.05 22.27 0.22 -3.99 16 27 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 28 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 29 C -0.13 -3.64 9.67 22.27 0.22 -3.42 16 30 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 31 H 0.38 17.77 7.80 -92.71 -0.72 17.05 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.41 11.94 8.14 -92.71 -0.75 11.19 16 35 H 0.07 1.73 7.83 -2.39 -0.02 1.71 16 36 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.10 1.83 8.11 -2.39 -0.02 1.81 16 38 H 0.11 1.74 8.12 -2.39 -0.02 1.72 16 39 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.10 2.47 7.46 -2.38 -0.02 2.45 16 41 H 0.10 3.90 7.71 -2.91 -0.02 3.88 16 42 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 43 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 44 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 45 H 0.13 3.23 8.04 -2.91 -0.02 3.21 16 Total: -1.00 -61.60 383.71 3.72 -57.88 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -0.46 Total: 43.83 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.10 Total: -10.17 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -3.44 Total: -108.13 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.05 Total: -20.70 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 1.54 Total: -7.88 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -61.60 3.72 -57.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714848229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.778 kcal (2) G-P(sol) polarization free energy of solvation -61.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds