Wall clock time and date at job start Sat Apr 11 2020 05:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46755 * 2 1 4 4 C 1.52999 * 109.47069 * 119.99612 * 2 1 3 5 5 O 1.45206 * 109.46777 * 65.00408 * 4 2 1 6 6 C 1.34639 * 116.99892 * 179.97438 * 5 4 2 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 4 9 9 C 1.47543 * 125.67555 * 359.69691 * 8 6 5 10 10 C 1.55388 * 104.84903 * 155.99488 * 9 8 6 11 11 C 1.53886 * 101.34945 * 36.06569 * 10 9 8 12 12 C 1.53360 * 111.15665 * 205.15861 * 11 10 9 13 13 C 1.54768 * 101.44044 * 214.91737 * 12 11 10 14 14 N 1.46907 * 105.53293 * 24.29573 * 13 12 11 15 15 C 1.46505 * 124.37344 * 163.24990 * 14 13 12 16 16 C 1.52994 * 109.47274 * 89.99604 * 15 14 13 17 17 C 1.50702 * 109.47297 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99902 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00233 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00138 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99851 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46880 * 90.00201 * 21 19 17 23 23 H 1.48505 * 109.47129 * 210.00227 * 21 19 17 24 24 H 1.48504 * 109.47364 * 330.00442 * 21 19 17 25 25 C 1.34830 * 111.25395 * 343.22872 * 14 13 12 26 26 O 1.21273 * 125.19022 * 181.16264 * 25 14 13 27 27 C 1.47348 * 125.66765 * 179.97438 * 8 6 5 28 28 H 1.08994 * 109.47199 * 299.99953 * 1 2 3 29 29 H 1.09001 * 109.46743 * 60.00110 * 1 2 3 30 30 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47199 * 240.00046 * 2 1 3 32 32 H 1.09000 * 109.46883 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47405 * 299.99484 * 3 2 1 34 34 H 1.08999 * 109.47145 * 60.00542 * 3 2 1 35 35 H 1.09000 * 109.47486 * 305.00460 * 4 2 1 36 36 H 1.09001 * 109.47362 * 184.99737 * 4 2 1 37 37 H 1.08995 * 110.33602 * 274.97780 * 9 8 6 38 38 H 1.08997 * 110.33958 * 37.22261 * 9 8 6 39 39 H 1.09001 * 111.24523 * 277.98437 * 10 9 8 40 40 H 1.09002 * 110.94203 * 154.02167 * 10 9 8 41 41 H 1.09004 * 111.02872 * 332.95364 * 12 11 10 42 42 H 1.08991 * 111.02830 * 96.87501 * 12 11 10 43 43 H 1.08999 * 110.23592 * 143.31338 * 13 12 11 44 44 H 1.09004 * 110.23053 * 265.19844 * 13 12 11 45 45 H 1.09002 * 109.47087 * 210.00372 * 15 14 13 46 46 H 1.09008 * 109.47078 * 330.00059 * 15 14 13 47 47 H 1.08994 * 109.47503 * 300.00628 * 16 15 14 48 48 H 1.09008 * 109.46696 * 60.00222 * 16 15 14 49 49 H 0.97001 * 120.00171 * 179.97438 * 20 19 17 50 50 H 1.08997 * 109.97240 * 301.30765 * 27 8 6 51 51 H 1.09004 * 109.96791 * 62.53490 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6559 -2.1203 1.1911 6 6 2.0310 -2.9005 2.2223 7 8 2.6624 -2.4253 3.1454 8 7 1.7060 -4.2084 2.2306 9 6 0.9408 -4.9116 1.1833 10 6 1.3584 -6.4023 1.3181 11 6 1.5172 -6.5355 2.8430 12 6 2.4871 -7.6681 3.2016 13 6 1.8521 -8.2158 4.5024 14 7 0.4315 -7.8482 4.4317 15 6 -0.6201 -8.4482 5.2565 16 6 -0.7744 -7.6453 6.5497 17 6 -1.8566 -8.2621 7.3979 18 1 -2.3816 -9.1394 7.0496 19 6 -2.1766 -7.7065 8.6185 20 7 -3.1207 -8.2451 9.3589 21 14 -1.2682 -6.1896 9.2212 22 1 -1.9796 -4.9706 8.7594 23 1 -1.2168 -6.2005 10.7053 24 1 0.1139 -6.1918 8.6779 25 6 0.2206 -6.8871 3.5099 26 8 -0.8536 -6.3835 3.2585 27 6 2.0510 -5.1727 3.2900 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 -0.1294 -4.7981 1.3554 38 1 1.2094 -4.5311 0.1979 39 1 2.3021 -6.5958 0.8082 40 1 0.5736 -7.0617 0.9474 41 1 2.5031 -8.4307 2.4228 42 1 3.4887 -7.2808 3.3881 43 1 1.9594 -9.2995 4.5470 44 1 2.3192 -7.7550 5.3728 45 1 -1.5621 -8.4385 4.7081 46 1 -0.3506 -9.4766 5.4974 47 1 0.1675 -7.6551 7.0981 48 1 -1.0439 -6.6169 6.3088 49 1 -3.3455 -7.8544 10.2179 50 1 3.1330 -5.2188 3.4136 51 1 1.5815 -4.8782 4.2287 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274312538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:27:35 Heat of formation + Delta-G solvation = -119.518910 kcal Electronic energy + Delta-G solvation = -30331.410963 eV Core-core repulsion = 26230.577454 eV Total energy + Delta-G solvation = -4100.833509 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35864 -40.27618 -37.93468 -36.74512 -36.21066 -35.23577 -34.00158 -32.50187 -30.79658 -29.50490 -28.42502 -27.53403 -27.03866 -25.49894 -24.63598 -22.91091 -21.81633 -20.85405 -20.67138 -20.37230 -18.94120 -18.11830 -17.14887 -17.05192 -16.97400 -16.25243 -15.72286 -15.50402 -15.06480 -14.97453 -14.49687 -14.20033 -14.11371 -13.86735 -13.70146 -13.34484 -13.22650 -12.97611 -12.93047 -12.73847 -12.70971 -12.58399 -12.48491 -12.41525 -12.13502 -11.77834 -11.60409 -11.51934 -11.48372 -11.18515 -11.10329 -11.03615 -10.97877 -10.69855 -10.65816 -10.45123 -10.14373 -9.84520 -9.43929 -9.24457 -8.92137 -8.56870 -8.25233 -6.08139 -4.07392 1.85715 2.70607 2.74086 3.31570 3.31790 3.38586 3.42077 3.67099 4.03294 4.13773 4.26166 4.41204 4.43407 4.45239 4.59767 4.70199 4.77907 5.02291 5.05782 5.09237 5.11773 5.18842 5.20591 5.26326 5.29325 5.37905 5.39610 5.48099 5.52773 5.53887 5.55250 5.61821 5.66413 5.67510 5.79848 5.83361 5.85903 5.92539 5.95006 5.96881 6.20058 6.25677 6.54798 6.73986 7.13626 7.27179 7.27960 7.53751 7.72511 8.13741 8.42138 8.47689 8.94443 9.53912 11.04793 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.002789 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.127321 B =10037.600411 C =11306.547429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.090 3.910 5 O -0.365 6.365 6 C 0.667 3.333 7 O -0.573 6.573 8 N -0.600 5.600 9 C 0.104 3.896 10 C -0.106 4.106 11 C -0.114 4.114 12 C -0.117 4.117 13 C 0.098 3.902 14 N -0.613 5.613 15 C 0.137 3.863 16 C -0.025 4.025 17 C -0.522 4.522 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.900 5.900 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.267 1.267 25 C 0.526 3.474 26 O -0.518 6.518 27 C 0.154 3.846 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.017 0.983 48 H 0.015 0.985 49 H 0.264 0.736 50 H 0.085 0.915 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.647 9.481 -22.378 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.203 4.203 4 C 0.015 3.985 5 O -0.279 6.279 6 C 0.422 3.578 7 O -0.462 6.462 8 N -0.341 5.341 9 C -0.018 4.018 10 C -0.145 4.145 11 C -0.118 4.118 12 C -0.155 4.155 13 C -0.026 4.026 14 N -0.346 5.346 15 C 0.017 3.983 16 C -0.063 4.063 17 C -0.560 4.560 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.191 1.191 25 C 0.312 3.688 26 O -0.394 6.394 27 C 0.032 3.968 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.036 0.964 48 H 0.034 0.966 49 H 0.074 0.926 50 H 0.103 0.897 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.119 10.026 -22.011 28.524 hybrid contribution 0.404 0.820 0.741 1.176 sum 15.523 10.846 -21.270 28.479 Atomic orbital electron populations 1.21843 0.94145 1.02735 1.01888 1.21177 0.97175 0.95830 0.97206 1.21778 1.01271 0.94597 1.02662 1.23105 1.00123 0.75943 0.99281 1.86212 1.74487 1.22822 1.44339 1.17406 0.78458 0.80995 0.80974 1.91008 1.44624 1.73290 1.37312 1.47077 1.57454 1.05162 1.24431 1.22524 0.97218 0.91077 0.90970 1.22614 1.03063 0.96215 0.92559 1.21591 0.96524 0.95864 0.97857 1.22569 0.98355 0.96664 0.97924 1.22163 0.81468 1.01164 0.97761 1.48704 1.08588 1.39118 1.38182 1.21618 0.88306 0.96531 0.91817 1.19900 0.97536 0.96225 0.92676 1.20940 1.18505 1.14281 1.02291 0.90776 1.24965 0.94707 0.96939 0.96507 1.69899 1.30633 1.40883 1.12442 0.86786 0.81007 0.83812 0.77710 1.20209 1.21275 1.19145 1.19949 0.89143 0.79556 0.80182 1.90718 1.28349 1.54518 1.65796 1.21595 1.00523 0.84389 0.90243 0.92551 0.92395 0.91769 0.90030 0.92268 0.91572 0.92158 0.91081 0.91217 0.89769 0.90001 0.89401 0.88925 0.89141 0.88822 0.90007 0.90880 0.90474 0.90804 0.96440 0.96624 0.92617 0.89690 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.09 37.16 0.34 -0.81 16 2 C -0.10 -0.71 3.16 -90.62 -0.29 -0.99 16 3 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 4 C 0.09 0.91 4.85 37.16 0.18 1.09 16 5 O -0.36 -4.54 9.30 -40.32 -0.37 -4.91 16 6 C 0.67 9.87 8.62 54.05 0.47 10.34 16 7 O -0.57 -10.08 16.46 -19.28 -0.32 -10.39 16 8 N -0.60 -8.01 3.34 -176.43 -0.59 -8.60 16 9 C 0.10 1.15 6.69 -2.20 -0.01 1.13 16 10 C -0.11 -0.97 5.89 -25.00 -0.15 -1.12 16 11 C -0.11 -1.31 0.66 -155.34 -0.10 -1.42 16 12 C -0.12 -0.97 6.26 -25.61 -0.16 -1.13 16 13 C 0.10 1.10 7.37 -2.89 -0.02 1.08 16 14 N -0.61 -9.92 2.95 -172.54 -0.51 -10.42 16 15 C 0.14 2.69 5.88 -4.04 -0.02 2.67 16 16 C -0.03 -0.61 4.36 -27.88 -0.12 -0.73 16 17 C -0.52 -14.88 9.66 -34.44 -0.33 -15.22 16 18 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 21 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 22 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 25 C 0.53 8.69 6.64 -11.31 -0.08 8.61 16 26 O -0.52 -10.64 16.76 5.56 0.09 -10.55 16 27 C 0.15 1.98 6.14 -3.56 -0.02 1.96 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.10 7.62 -51.93 -0.40 0.70 16 38 H 0.08 0.73 8.04 -51.93 -0.42 0.32 16 39 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 40 H 0.09 0.85 8.00 -51.93 -0.42 0.43 16 41 H 0.09 0.58 7.94 -51.93 -0.41 0.17 16 42 H 0.09 0.58 7.43 -51.93 -0.39 0.20 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.08 1.62 7.96 -51.93 -0.41 1.21 16 46 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 47 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 48 H 0.02 0.40 7.57 -51.92 -0.39 0.01 16 49 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 50 H 0.08 0.92 7.41 -51.93 -0.38 0.54 16 51 H 0.08 1.19 7.84 -51.93 -0.41 0.79 16 LS Contribution 409.70 15.07 6.17 6.17 Total: -1.00 -36.23 409.70 -8.56 -44.79 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -9.06 Total: -3.69 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -0.08 Total: 6.96 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.32 Total: -46.14 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.60 Total: -25.85 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.23 -8.56 -44.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274312538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.732 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds