Wall clock time and date at job start Sat Apr 11 2020 05:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46755 * 2 1 4 4 C 1.52999 * 109.47069 * 119.99612 * 2 1 3 5 5 O 1.45206 * 109.46777 * 65.00408 * 4 2 1 6 6 C 1.34639 * 116.99892 * 179.97438 * 5 4 2 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 4 9 9 C 1.47543 * 125.67555 * 359.69691 * 8 6 5 10 10 C 1.55388 * 104.84903 * 155.99488 * 9 8 6 11 11 C 1.53886 * 101.34945 * 36.06569 * 10 9 8 12 12 C 1.53360 * 111.15665 * 205.15861 * 11 10 9 13 13 C 1.54768 * 101.44044 * 214.91737 * 12 11 10 14 14 N 1.46907 * 105.53293 * 24.29573 * 13 12 11 15 15 C 1.46505 * 124.37344 * 163.24990 * 14 13 12 16 16 C 1.52994 * 109.47274 * 89.99604 * 15 14 13 17 17 C 1.50702 * 109.47297 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99902 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00233 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00138 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99851 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46880 * 90.00201 * 21 19 17 23 23 H 1.48505 * 109.47129 * 210.00227 * 21 19 17 24 24 H 1.48504 * 109.47364 * 330.00442 * 21 19 17 25 25 C 1.34830 * 111.25395 * 343.22872 * 14 13 12 26 26 O 1.21273 * 125.19022 * 181.16264 * 25 14 13 27 27 C 1.47348 * 125.66765 * 179.97438 * 8 6 5 28 28 H 1.08994 * 109.47199 * 299.99953 * 1 2 3 29 29 H 1.09001 * 109.46743 * 60.00110 * 1 2 3 30 30 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47199 * 240.00046 * 2 1 3 32 32 H 1.09000 * 109.46883 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47405 * 299.99484 * 3 2 1 34 34 H 1.08999 * 109.47145 * 60.00542 * 3 2 1 35 35 H 1.09000 * 109.47486 * 305.00460 * 4 2 1 36 36 H 1.09001 * 109.47362 * 184.99737 * 4 2 1 37 37 H 1.08995 * 110.33602 * 274.97780 * 9 8 6 38 38 H 1.08997 * 110.33958 * 37.22261 * 9 8 6 39 39 H 1.09001 * 111.24523 * 277.98437 * 10 9 8 40 40 H 1.09002 * 110.94203 * 154.02167 * 10 9 8 41 41 H 1.09004 * 111.02872 * 332.95364 * 12 11 10 42 42 H 1.08991 * 111.02830 * 96.87501 * 12 11 10 43 43 H 1.08999 * 110.23592 * 143.31338 * 13 12 11 44 44 H 1.09004 * 110.23053 * 265.19844 * 13 12 11 45 45 H 1.09002 * 109.47087 * 210.00372 * 15 14 13 46 46 H 1.09008 * 109.47078 * 330.00059 * 15 14 13 47 47 H 1.08994 * 109.47503 * 300.00628 * 16 15 14 48 48 H 1.09008 * 109.46696 * 60.00222 * 16 15 14 49 49 H 0.97001 * 120.00171 * 179.97438 * 20 19 17 50 50 H 1.08997 * 109.97240 * 301.30765 * 27 8 6 51 51 H 1.09004 * 109.96791 * 62.53490 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6559 -2.1203 1.1911 6 6 2.0310 -2.9005 2.2223 7 8 2.6624 -2.4253 3.1454 8 7 1.7060 -4.2084 2.2306 9 6 0.9408 -4.9116 1.1833 10 6 1.3584 -6.4023 1.3181 11 6 1.5172 -6.5355 2.8430 12 6 2.4871 -7.6681 3.2016 13 6 1.8521 -8.2158 4.5024 14 7 0.4315 -7.8482 4.4317 15 6 -0.6201 -8.4482 5.2565 16 6 -0.7744 -7.6453 6.5497 17 6 -1.8566 -8.2621 7.3979 18 1 -2.3816 -9.1394 7.0496 19 6 -2.1766 -7.7065 8.6185 20 7 -3.1207 -8.2451 9.3589 21 14 -1.2682 -6.1896 9.2212 22 1 -1.9796 -4.9706 8.7594 23 1 -1.2168 -6.2005 10.7053 24 1 0.1139 -6.1918 8.6779 25 6 0.2206 -6.8871 3.5099 26 8 -0.8536 -6.3835 3.2585 27 6 2.0510 -5.1727 3.2900 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 -0.1294 -4.7981 1.3554 38 1 1.2094 -4.5311 0.1979 39 1 2.3021 -6.5958 0.8082 40 1 0.5736 -7.0617 0.9474 41 1 2.5031 -8.4307 2.4228 42 1 3.4887 -7.2808 3.3881 43 1 1.9594 -9.2995 4.5470 44 1 2.3192 -7.7550 5.3728 45 1 -1.5621 -8.4385 4.7081 46 1 -0.3506 -9.4766 5.4974 47 1 0.1675 -7.6551 7.0981 48 1 -1.0439 -6.6169 6.3088 49 1 -3.3455 -7.8544 10.2179 50 1 3.1330 -5.2188 3.4136 51 1 1.5815 -4.8782 4.2287 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274312538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:27:34 Heat of formation + Delta-G solvation = -143.399694 kcal Electronic energy + Delta-G solvation = -30332.446512 eV Core-core repulsion = 26230.577454 eV Total energy + Delta-G solvation = -4101.869057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.41374 -41.35983 -38.96550 -37.77693 -37.51379 -36.04475 -35.70209 -34.20446 -32.22972 -30.70306 -29.44422 -28.09094 -27.86611 -27.14287 -25.70290 -23.91500 -23.25513 -22.00515 -21.65654 -21.31981 -20.12556 -19.15985 -19.10298 -18.16992 -17.99405 -17.29514 -17.16130 -16.60233 -16.25492 -16.05507 -15.92531 -15.32840 -15.07625 -14.84389 -14.82333 -14.67559 -14.53203 -14.36118 -14.08481 -13.77696 -13.70898 -13.62557 -13.42407 -13.24058 -13.04956 -13.01946 -12.99913 -12.61366 -12.37909 -12.22148 -12.13839 -12.11498 -11.90243 -11.85809 -11.78281 -11.74018 -11.67594 -11.54534 -11.54249 -10.86003 -10.65070 -9.96384 -9.61584 -8.37771 -6.41717 0.88273 1.26265 1.28745 1.38699 1.48709 1.58776 2.08903 2.26762 2.76955 2.97394 3.15453 3.23557 3.38851 3.73491 3.79181 3.80291 3.91774 4.08805 4.19067 4.25453 4.26807 4.33916 4.36164 4.44031 4.49582 4.51168 4.56056 4.59345 4.68064 4.74410 4.76659 4.77051 4.84763 4.93005 4.96196 4.97450 5.02990 5.11631 5.11916 5.14601 5.14941 5.19746 5.26958 5.34888 5.40450 5.45851 5.71252 6.16606 6.22139 6.25052 6.64782 7.04454 7.15228 7.23600 8.78367 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.002789 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.127321 B =10037.600411 C =11306.547429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.143 4.143 4 C 0.084 3.916 5 O -0.362 6.362 6 C 0.661 3.339 7 O -0.608 6.608 8 N -0.602 5.602 9 C 0.100 3.900 10 C -0.093 4.093 11 C -0.105 4.105 12 C -0.098 4.098 13 C 0.085 3.915 14 N -0.619 5.619 15 C 0.148 3.852 16 C -0.016 4.016 17 C -0.530 4.530 18 H 0.044 0.956 19 C 0.013 3.987 20 N -0.942 5.942 21 Si 0.942 3.058 22 H -0.281 1.281 23 H -0.274 1.274 24 H -0.250 1.250 25 C 0.511 3.489 26 O -0.573 6.573 27 C 0.151 3.849 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.094 0.906 47 H 0.028 0.972 48 H -0.008 1.008 49 H 0.268 0.732 50 H 0.114 0.886 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.205 9.579 -24.531 32.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.200 4.200 4 C 0.009 3.991 5 O -0.276 6.276 6 C 0.416 3.584 7 O -0.500 6.500 8 N -0.342 5.342 9 C -0.021 4.021 10 C -0.131 4.131 11 C -0.109 4.109 12 C -0.135 4.135 13 C -0.036 4.036 14 N -0.350 5.350 15 C 0.026 3.974 16 C -0.054 4.054 17 C -0.568 4.568 18 H 0.063 0.937 19 C -0.185 4.185 20 N -0.582 5.582 21 Si 0.766 3.234 22 H -0.207 1.207 23 H -0.199 1.199 24 H -0.173 1.173 25 C 0.299 3.701 26 O -0.452 6.452 27 C 0.029 3.971 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.149 0.851 40 H 0.113 0.887 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.124 0.876 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.113 0.887 47 H 0.046 0.954 48 H 0.010 0.990 49 H 0.077 0.923 50 H 0.131 0.869 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 18.714 10.097 -24.191 32.209 hybrid contribution -0.817 0.776 1.407 1.802 sum 17.898 10.872 -22.785 30.947 Atomic orbital electron populations 1.21848 0.94548 1.01798 1.02448 1.21199 0.96755 0.96656 0.96035 1.21779 1.01751 0.93230 1.03246 1.23377 1.00528 0.74871 1.00275 1.86236 1.74206 1.23753 1.43364 1.17648 0.78235 0.81533 0.80966 1.90971 1.46366 1.74072 1.38624 1.47259 1.57025 1.04924 1.25003 1.22637 0.95388 0.92684 0.91408 1.22709 1.05212 0.94355 0.90864 1.21537 0.94230 0.96204 0.98891 1.22698 0.98418 0.95592 0.96808 1.22575 0.78302 1.02974 0.99760 1.48782 1.10114 1.38931 1.37219 1.21176 0.89175 0.97013 0.90024 1.19761 0.96195 0.95106 0.94382 1.21277 1.19241 1.13441 1.02861 0.93749 1.25843 0.95643 1.00092 0.96889 1.70023 1.32362 1.42707 1.13156 0.85795 0.80405 0.79415 0.77804 1.20743 1.19878 1.17348 1.20945 0.90336 0.78718 0.80084 1.90681 1.31007 1.56131 1.67390 1.21703 1.01786 0.84865 0.88709 0.93203 0.90649 0.93433 0.89077 0.91540 0.90090 0.92474 0.92408 0.90739 0.92808 0.87591 0.85082 0.88749 0.85948 0.85497 0.87605 0.90893 0.92905 0.88731 0.95391 0.98993 0.92277 0.86853 0.94387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.09 71.98 0.65 -1.56 16 2 C -0.09 -1.20 3.16 -10.79 -0.03 -1.23 16 3 C -0.14 -1.38 9.19 71.98 0.66 -0.72 16 4 C 0.08 1.66 4.85 71.98 0.35 2.01 16 5 O -0.36 -8.92 9.30 -55.49 -0.52 -9.44 16 6 C 0.66 19.47 8.62 129.79 1.12 20.59 16 7 O -0.61 -21.56 16.46 19.80 0.33 -21.24 16 8 N -0.60 -15.53 3.34 -942.52 -3.15 -18.68 16 9 C 0.10 2.08 6.69 87.00 0.58 2.66 16 10 C -0.09 -1.40 5.89 31.71 0.19 -1.21 16 11 C -0.10 -2.13 0.66 -52.72 -0.03 -2.17 16 12 C -0.10 -1.11 6.26 31.32 0.20 -0.91 16 13 C 0.09 1.62 7.37 86.91 0.64 2.26 16 14 N -0.62 -19.39 2.95 -818.16 -2.41 -21.81 16 15 C 0.15 5.87 5.88 86.38 0.51 6.38 16 16 C -0.02 -0.79 4.36 29.85 0.13 -0.66 16 17 C -0.53 -31.15 9.66 25.60 0.25 -30.90 16 18 H 0.04 2.80 7.99 -2.91 -0.02 2.77 16 19 C 0.01 0.80 5.47 84.66 0.46 1.26 16 20 N -0.94 -59.88 13.96 21.45 0.30 -59.58 16 21 Si 0.94 46.79 27.47 68.60 1.88 48.67 16 22 H -0.28 -14.14 7.11 99.48 0.71 -13.44 16 23 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 24 H -0.25 -11.61 6.54 99.48 0.65 -10.95 16 25 C 0.51 16.76 6.64 87.43 0.58 17.34 16 26 O -0.57 -24.57 16.76 -3.01 -0.05 -24.62 16 27 C 0.15 3.65 6.14 86.23 0.53 4.18 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.86 7.82 -2.39 -0.02 0.84 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.45 7.62 -2.39 -0.02 1.43 16 38 H 0.11 1.66 8.04 -2.39 -0.02 1.64 16 39 H 0.13 0.93 8.06 -2.39 -0.02 0.91 16 40 H 0.09 1.46 8.00 -2.39 -0.02 1.44 16 41 H 0.12 0.73 7.94 -2.38 -0.02 0.71 16 42 H 0.13 0.73 7.43 -2.39 -0.02 0.71 16 43 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.05 2.32 7.96 -2.39 -0.02 2.31 16 46 H 0.09 3.32 8.14 -2.38 -0.02 3.30 16 47 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 48 H -0.01 -0.45 7.57 -2.38 -0.02 -0.47 16 49 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 50 H 0.11 2.10 7.41 -2.39 -0.02 2.08 16 51 H 0.04 1.20 7.84 -2.39 -0.02 1.19 16 Total: -1.00 -84.83 409.70 4.00 -80.83 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.84 Total: 8.55 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 6.78 Total: 17.32 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -5.26 Total: -100.06 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -0.24 Total: -55.30 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.88 Total: 48.67 kcal Total: -84.83 4.00 -80.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274312538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.573 kcal (2) G-P(sol) polarization free energy of solvation -84.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds